Wall clock time and date at job start Mon Mar 30 2020 03:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38342 * 119.86151 * 2 1 4 4 C 1.37975 * 120.13391 * 180.02562 * 3 2 1 5 5 C 1.39490 * 119.86612 * 359.97438 * 4 3 2 6 6 C 1.48030 * 120.14123 * 179.97438 * 5 4 3 7 7 N 1.29302 * 122.91328 * 330.51572 * 6 5 4 8 8 C 1.46930 * 110.13416 * 179.97438 * 7 6 5 9 9 C 1.54153 * 104.07724 * 0.02562 * 8 7 6 10 10 N 1.37196 * 122.91267 * 150.48493 * 6 5 4 11 11 C 1.36884 * 125.84424 * 0.02562 * 10 6 5 12 12 H 1.08001 * 119.99916 * 342.94315 * 11 10 6 13 13 C 1.38931 * 120.00144 * 162.93282 * 11 10 6 14 14 N 1.31457 * 120.00276 * 4.99043 * 13 11 10 15 15 Si 1.86805 * 120.00022 * 184.98389 * 13 11 10 16 16 H 1.48498 * 109.47090 * 90.00552 * 15 13 11 17 17 H 1.48504 * 109.47056 * 210.00384 * 15 13 11 18 18 H 1.48506 * 109.47034 * 330.00335 * 15 13 11 19 19 C 1.39492 * 119.72387 * 0.27292 * 5 4 3 20 20 C 1.37983 * 119.86160 * 359.46670 * 19 5 4 21 21 H 1.09001 * 109.47028 * 89.99854 * 1 2 3 22 22 H 1.08997 * 109.47109 * 210.00170 * 1 2 3 23 23 H 1.09003 * 109.46679 * 329.99674 * 1 2 3 24 24 H 1.07996 * 119.93685 * 0.02562 * 3 2 1 25 25 H 1.08000 * 120.07077 * 179.97438 * 4 3 2 26 26 H 1.09001 * 110.50808 * 118.64711 * 8 7 6 27 27 H 1.08993 * 110.51198 * 241.34703 * 8 7 6 28 28 H 1.09000 * 110.65366 * 241.54284 * 9 8 7 29 29 H 1.08996 * 110.65695 * 118.45030 * 9 8 7 30 30 H 0.97001 * 120.00686 * 174.99780 * 14 13 11 31 31 H 1.08006 * 120.06810 * 179.72626 * 19 5 4 32 32 H 1.07994 * 119.93075 * 180.25230 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1959 1.1997 0.0000 4 6 3.5756 1.2063 -0.0005 5 6 4.2760 0.0000 -0.0005 6 6 5.7563 -0.0001 -0.0017 7 7 6.4585 0.9445 -0.5369 8 6 7.8915 0.6619 -0.3774 9 6 7.9270 -0.6794 0.3815 10 7 6.5022 -1.0022 0.5656 11 6 6.0066 -2.1124 1.1946 12 1 4.9777 -2.1333 1.5222 13 6 6.8272 -3.2123 1.4115 14 7 8.1034 -3.1515 1.1021 15 14 6.1171 -4.7776 2.1429 16 1 5.6393 -5.6623 1.0500 17 1 7.1668 -5.4793 2.9246 18 1 4.9806 -4.4357 3.0356 19 6 3.5757 -1.2064 -0.0058 20 6 2.1959 -1.1998 0.0002 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.6526 2.1331 0.0004 25 1 4.1124 2.1435 -0.0010 26 1 8.3718 0.5623 -1.3508 27 1 8.3724 1.4453 0.2083 28 1 8.4219 -0.5627 1.3456 29 1 8.4214 -1.4459 -0.2153 30 1 8.6911 -3.8918 1.3198 31 1 4.1123 -2.1437 -0.0103 32 1 1.6526 -2.1331 0.0003 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260093823.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:11 Heat of formation + Delta-G solvation = 43.825026 kcal Electronic energy + Delta-G solvation = -15571.158191 eV Core-core repulsion = 13110.227816 eV Total energy + Delta-G solvation = -2460.930375 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.99514 -39.53050 -35.36054 -34.00313 -32.42123 -31.55899 -30.39552 -27.35310 -26.79871 -23.75565 -22.75411 -22.51379 -20.46461 -19.60485 -17.44523 -16.59735 -16.31885 -15.99817 -15.93437 -15.41528 -14.74310 -14.41791 -14.21577 -13.84216 -13.56691 -13.42738 -13.10277 -13.06872 -12.84533 -12.66633 -12.44142 -12.12575 -12.05733 -11.83610 -11.62439 -10.85548 -10.36865 -9.75296 -9.46538 -8.89289 -8.28607 -5.80281 0.19720 0.59465 1.39552 1.41197 1.53437 1.97037 2.24875 2.92365 3.05439 3.20250 3.77617 4.07260 4.11895 4.16785 4.25155 4.45272 4.58661 4.65358 4.72423 4.82920 4.96037 4.97227 5.02889 5.23930 5.26784 5.33600 5.34839 5.44687 5.62525 5.73579 5.76126 5.84302 6.18229 6.41906 7.02605 7.58557 7.86788 8.75224 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.022376 B = 0.010019 C = 0.007060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.039074 B = 2793.908358 C = 3965.153303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.080 4.080 3 C -0.127 4.127 4 C -0.086 4.086 5 C -0.058 4.058 6 C 0.357 3.643 7 N -0.658 5.658 8 C 0.029 3.971 9 C 0.116 3.884 10 N -0.482 5.482 11 C -0.319 4.319 12 H 0.112 0.888 13 C -0.021 4.021 14 N -0.915 5.915 15 Si 0.993 3.007 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.257 1.257 19 C -0.107 4.107 20 C -0.131 4.131 21 H 0.083 0.917 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.153 0.847 25 H 0.122 0.878 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.036 0.964 29 H 0.067 0.933 30 H 0.269 0.731 31 H 0.125 0.875 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.687 2.542 -0.398 12.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.080 4.080 3 C -0.145 4.145 4 C -0.106 4.106 5 C -0.060 4.060 6 C 0.086 3.914 7 N -0.400 5.400 8 C -0.102 4.102 9 C -0.008 4.008 10 N -0.187 5.187 11 C -0.448 4.448 12 H 0.129 0.871 13 C -0.221 4.221 14 N -0.555 5.555 15 Si 0.816 3.184 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.181 1.181 19 C -0.126 4.126 20 C -0.149 4.149 21 H 0.101 0.899 22 H 0.095 0.905 23 H 0.099 0.901 24 H 0.171 0.829 25 H 0.140 0.860 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.143 0.857 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.505 3.055 -0.807 12.898 hybrid contribution 1.282 -1.494 0.783 2.118 sum -11.224 1.561 -0.025 11.332 Atomic orbital electron populations 1.20847 0.88263 1.03957 1.03383 1.20431 0.97993 0.92354 0.97263 1.21227 0.92595 0.99128 1.01543 1.21266 0.94950 0.96494 0.97905 1.18300 0.87925 0.95239 1.04541 1.21711 0.92670 0.86680 0.90295 1.74336 1.01729 1.27911 1.35979 1.22966 0.93394 0.94879 0.98943 1.22263 0.83948 0.95865 0.98762 1.44070 1.04071 1.19535 1.51068 1.19960 0.99003 0.90475 1.35347 0.87058 1.26264 0.95781 1.01835 0.98244 1.70046 1.04710 1.33626 1.47086 0.84909 0.78127 0.77085 0.78235 1.19518 1.20829 1.18077 1.21721 0.95364 0.97719 0.97829 1.21223 0.92617 0.99256 1.01786 0.89888 0.90522 0.90080 0.82887 0.85994 0.91412 0.91214 0.94580 0.91462 0.92178 0.85719 0.83656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 10.01 71.24 0.71 -1.07 16 2 C -0.08 -2.06 5.89 -19.81 -0.12 -2.18 16 3 C -0.13 -3.54 9.68 22.23 0.22 -3.33 16 4 C -0.09 -3.13 9.64 22.51 0.22 -2.92 16 5 C -0.06 -2.51 5.74 -20.08 -0.12 -2.63 16 6 C 0.36 18.05 7.30 136.96 1.00 19.05 16 7 N -0.66 -32.90 11.33 -337.23 -3.82 -36.72 16 8 C 0.03 1.35 8.04 86.69 0.70 2.05 16 9 C 0.12 6.11 5.90 86.63 0.51 6.62 16 10 N -0.48 -26.10 3.16 -508.76 -1.61 -27.71 16 11 C -0.32 -17.05 8.26 84.07 0.69 -16.35 16 12 H 0.11 5.61 5.56 -2.91 -0.02 5.60 16 13 C -0.02 -1.09 5.49 84.91 0.47 -0.62 16 14 N -0.92 -50.70 10.58 21.66 0.23 -50.47 16 15 Si 0.99 40.81 29.56 68.60 2.03 42.84 16 16 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 17 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 19 C -0.11 -4.19 8.16 22.51 0.18 -4.01 16 20 C -0.13 -3.95 9.68 22.23 0.22 -3.74 16 21 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 23 H 0.08 1.09 8.08 -2.39 -0.02 1.07 16 24 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 25 H 0.12 4.45 7.97 -2.91 -0.02 4.43 16 26 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 27 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 28 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.07 3.76 6.81 -2.39 -0.02 3.74 16 30 H 0.27 14.07 8.32 -92.71 -0.77 13.30 16 31 H 0.13 5.38 5.65 -2.91 -0.02 5.36 16 32 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -63.65 268.89 2.62 -61.02 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 1.11 Total: 20.16 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 4.68 Total: -9.13 kcal Atomic # 7 Polarization: -109.69 SS G_CDS: -5.20 Total: -114.89 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -63.65 2.62 -61.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260093823.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.849 kcal (2) G-P(sol) polarization free energy of solvation -63.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds