Wall clock time and date at job start Mon Mar 30 2020 03:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33404 * 126.26984 * 2 1 4 4 C 1.30901 * 109.87299 * 179.97438 * 3 2 1 5 5 N 1.35036 * 109.37026 * 0.02562 * 4 3 2 6 6 C 1.37058 * 133.11980 * 180.02562 * 5 4 3 7 7 C 1.34675 * 120.56071 * 179.97438 * 6 5 4 8 8 C 1.40812 * 120.61698 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.11416 * 179.97438 * 8 7 6 10 10 H 1.09007 * 109.47138 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47133 * 60.00235 * 9 8 7 12 12 C 1.50698 * 109.47249 * 299.99908 * 9 8 7 13 13 H 1.08001 * 120.00075 * 0.02562 * 12 9 8 14 14 C 1.37873 * 120.00192 * 179.97438 * 12 9 8 15 15 N 1.31517 * 120.00087 * 0.02562 * 14 12 9 16 16 Si 1.86797 * 120.00288 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47110 * 90.00008 * 16 14 12 18 18 H 1.48495 * 109.47381 * 210.00570 * 16 14 12 19 19 H 1.48511 * 109.47017 * 330.00354 * 16 14 12 20 20 C 1.35879 * 119.77235 * 359.96396 * 8 7 6 21 21 C 1.37985 * 126.27078 * 179.97438 * 2 1 3 22 22 H 1.08995 * 109.47014 * 89.97292 * 1 2 3 23 23 H 1.08993 * 109.47111 * 209.97850 * 1 2 3 24 24 H 1.08997 * 109.47006 * 329.97751 * 1 2 3 25 25 H 1.07990 * 125.31671 * 179.97438 * 4 3 2 26 26 H 1.08003 * 119.72402 * 0.02562 * 6 5 4 27 27 H 1.08001 * 119.68961 * 179.72397 * 7 6 5 28 28 H 1.09004 * 109.47253 * 59.99936 * 11 9 8 29 29 H 1.08999 * 109.47052 * 179.97438 * 11 9 8 30 30 H 1.08998 * 109.47168 * 300.00283 * 11 9 8 31 31 H 0.96993 * 120.00559 * 179.97438 * 15 14 12 32 32 H 1.08002 * 120.41443 * 180.02562 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2963 1.0756 0.0000 4 6 3.5520 0.7060 0.0006 5 7 3.6221 -0.6425 0.0004 6 6 4.6697 -1.5262 0.0012 7 6 4.4455 -2.8541 0.0012 8 6 3.1312 -3.3595 0.0010 9 6 2.8933 -4.8476 0.0005 10 1 1.8211 -5.0441 -0.0001 11 6 3.5249 -5.4654 1.2496 12 6 3.5155 -5.4553 -1.2301 13 1 4.0320 -4.8270 -1.9406 14 6 3.4264 -6.8137 -1.4485 15 7 2.7979 -7.5791 -0.5831 16 14 4.1982 -7.5673 -2.9736 17 1 5.5999 -7.9581 -2.6773 18 1 3.4244 -8.7683 -3.3782 19 1 4.1841 -6.5742 -4.0777 20 6 2.0781 -2.5007 0.0015 21 6 2.3234 -1.1125 0.0005 22 1 -0.3633 0.0005 -1.0276 23 1 -0.3633 -0.8901 0.5135 24 1 -0.3633 0.8898 0.5142 25 1 4.3997 1.3751 0.0003 26 1 5.6838 -1.1545 0.0026 27 1 5.2815 -3.5378 -0.0026 28 1 3.0748 -5.0258 2.1397 29 1 3.3524 -6.5417 1.2494 30 1 4.5970 -5.2689 1.2498 31 1 2.7348 -8.5347 -0.7369 32 1 1.0658 -2.8770 0.0017 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260103477.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:42 Heat of formation + Delta-G solvation = 69.401081 kcal Electronic energy + Delta-G solvation = -15435.683172 eV Core-core repulsion = 12975.861858 eV Total energy + Delta-G solvation = -2459.821314 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.31741 -37.52357 -34.63794 -32.92541 -31.06136 -30.02586 -29.00627 -25.76546 -25.22006 -23.17914 -22.41582 -20.76583 -19.45307 -17.26432 -16.55174 -15.53990 -15.43747 -15.19992 -14.53050 -14.18516 -13.62828 -12.90780 -12.73306 -12.64755 -12.19712 -11.93624 -11.69680 -11.34431 -11.23693 -10.99587 -10.80476 -10.49411 -10.24571 -9.97948 -9.73757 -9.57795 -9.05191 -8.67879 -8.48630 -6.83908 -6.11791 -4.20277 1.37146 1.81439 3.06990 3.22480 3.30307 3.33419 3.39060 4.00785 4.34914 4.80722 4.84985 5.13372 5.18493 5.33311 5.47184 5.75004 5.77042 5.93113 5.95678 6.14518 6.28710 6.43576 6.62734 6.69742 6.84566 6.96833 7.00820 7.11741 7.24323 7.58564 7.63043 7.80145 7.96469 8.24304 8.27191 8.81887 9.45378 10.93331 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037402 B = 0.006664 C = 0.006445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.441240 B = 4200.750572 C = 4343.701536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.028 4.028 3 N -0.457 5.457 4 C 0.110 3.890 5 N -0.364 5.364 6 C 0.016 3.984 7 C -0.094 4.094 8 C -0.029 4.029 9 C 0.074 3.926 10 H 0.039 0.961 11 C -0.133 4.133 12 C -0.513 4.513 13 H 0.057 0.943 14 C 0.065 3.935 15 N -0.887 5.887 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.114 4.114 21 C 0.029 3.971 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.202 0.798 26 H 0.157 0.843 27 H 0.150 0.850 28 H 0.010 0.990 29 H 0.088 0.912 30 H 0.028 0.972 31 H 0.262 0.738 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.554 9.340 2.020 9.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.163 4.163 3 N -0.172 5.172 4 C -0.164 4.164 5 N -0.035 5.035 6 C -0.103 4.103 7 C -0.115 4.115 8 C -0.032 4.032 9 C 0.056 3.944 10 H 0.057 0.943 11 C -0.191 4.191 12 C -0.551 4.551 13 H 0.075 0.925 14 C -0.137 4.137 15 N -0.526 5.526 16 Si 0.721 3.279 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.134 4.134 21 C -0.081 4.081 22 H 0.082 0.918 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.218 0.782 26 H 0.175 0.825 27 H 0.167 0.833 28 H 0.029 0.971 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.368 10.089 2.049 10.385 hybrid contribution 0.995 -1.255 -0.891 1.833 sum 2.362 8.834 1.158 9.217 Atomic orbital electron populations 1.19887 0.87432 1.02206 1.01812 1.20719 0.95954 0.86616 1.13014 1.69738 1.00250 1.30676 1.16548 1.24470 0.96815 0.80277 1.14808 1.42766 1.06908 1.07570 1.46269 1.21546 0.91326 0.89770 1.07652 1.20986 0.99294 0.92826 0.98438 1.20639 0.91175 0.99236 0.92151 1.17895 0.97885 0.83522 0.95124 0.94255 1.21788 0.97983 1.04252 0.95041 1.21034 1.35856 0.92397 1.05789 0.92477 1.24942 0.95115 0.97147 0.96535 1.69871 1.42112 1.05292 1.35292 0.86570 0.79245 0.78858 0.83233 1.20591 1.21094 1.19892 1.20395 1.00452 0.88096 1.04409 1.19564 0.83823 0.95138 1.09547 0.91833 0.91438 0.91613 0.78151 0.82514 0.83282 0.97122 0.89365 0.95252 0.92766 0.84379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.78 10.44 36.01 0.38 -0.40 16 2 C -0.03 -0.50 7.21 -82.00 -0.59 -1.09 16 3 N -0.46 -8.13 11.19 -10.19 -0.11 -8.25 16 4 C 0.11 1.73 12.75 -90.05 -1.15 0.58 16 5 N -0.36 -6.19 2.94 -62.44 -0.18 -6.37 16 6 C 0.02 0.25 10.97 -16.48 -0.18 0.07 16 7 C -0.09 -1.67 8.69 -39.87 -0.35 -2.02 16 8 C -0.03 -0.59 4.72 -104.50 -0.49 -1.08 16 9 C 0.07 1.73 2.48 -92.93 -0.23 1.50 16 10 H 0.04 0.99 7.87 -51.92 -0.41 0.58 16 11 C -0.13 -2.99 8.79 37.16 0.33 -2.66 16 12 C -0.51 -13.16 8.26 -34.44 -0.28 -13.45 16 13 H 0.06 1.46 7.61 -52.49 -0.40 1.07 16 14 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 15 N -0.89 -24.07 11.32 55.43 0.63 -23.44 16 16 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 C -0.11 -2.19 9.71 -39.39 -0.38 -2.57 16 21 C 0.03 0.55 6.74 -84.09 -0.57 -0.02 16 22 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.20 2.27 8.06 -52.49 -0.42 1.85 16 26 H 0.16 1.75 8.06 -52.48 -0.42 1.32 16 27 H 0.15 2.50 7.62 -52.49 -0.40 2.10 16 28 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 30 H 0.03 0.61 7.42 -51.93 -0.39 0.23 16 31 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 32 H 0.14 2.47 7.94 -52.49 -0.42 2.06 16 LS Contribution 273.89 15.07 4.13 4.13 Total: -1.00 -29.19 273.89 -8.18 -37.37 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -4.00 Total: 0.76 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -3.62 Total: -19.54 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.33 Total: -38.06 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.19 -8.18 -37.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260103477.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.766 kcal (2) G-P(sol) polarization free energy of solvation -29.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds