Wall clock time and date at job start Mon Mar 30 2020 03:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33404 * 126.26984 * 2 1 4 4 C 1.30901 * 109.87299 * 179.97438 * 3 2 1 5 5 N 1.35036 * 109.37026 * 0.02562 * 4 3 2 6 6 C 1.37058 * 133.11980 * 180.02562 * 5 4 3 7 7 C 1.34675 * 120.56071 * 179.97438 * 6 5 4 8 8 C 1.40812 * 120.61698 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.11416 * 179.97438 * 8 7 6 10 10 H 1.09007 * 109.47138 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47133 * 60.00235 * 9 8 7 12 12 C 1.50698 * 109.47249 * 299.99908 * 9 8 7 13 13 H 1.08001 * 120.00075 * 0.02562 * 12 9 8 14 14 C 1.37873 * 120.00192 * 179.97438 * 12 9 8 15 15 N 1.31517 * 120.00087 * 0.02562 * 14 12 9 16 16 Si 1.86797 * 120.00288 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47110 * 90.00008 * 16 14 12 18 18 H 1.48495 * 109.47381 * 210.00570 * 16 14 12 19 19 H 1.48511 * 109.47017 * 330.00354 * 16 14 12 20 20 C 1.35879 * 119.77235 * 359.96396 * 8 7 6 21 21 C 1.37985 * 126.27078 * 179.97438 * 2 1 3 22 22 H 1.08995 * 109.47014 * 89.97292 * 1 2 3 23 23 H 1.08993 * 109.47111 * 209.97850 * 1 2 3 24 24 H 1.08997 * 109.47006 * 329.97751 * 1 2 3 25 25 H 1.07990 * 125.31671 * 179.97438 * 4 3 2 26 26 H 1.08003 * 119.72402 * 0.02562 * 6 5 4 27 27 H 1.08001 * 119.68961 * 179.72397 * 7 6 5 28 28 H 1.09004 * 109.47253 * 59.99936 * 11 9 8 29 29 H 1.08999 * 109.47052 * 179.97438 * 11 9 8 30 30 H 1.08998 * 109.47168 * 300.00283 * 11 9 8 31 31 H 0.96993 * 120.00559 * 179.97438 * 15 14 12 32 32 H 1.08002 * 120.41443 * 180.02562 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2963 1.0756 0.0000 4 6 3.5520 0.7060 0.0006 5 7 3.6221 -0.6425 0.0004 6 6 4.6697 -1.5262 0.0012 7 6 4.4455 -2.8541 0.0012 8 6 3.1312 -3.3595 0.0010 9 6 2.8933 -4.8476 0.0005 10 1 1.8211 -5.0441 -0.0001 11 6 3.5249 -5.4654 1.2496 12 6 3.5155 -5.4553 -1.2301 13 1 4.0320 -4.8270 -1.9406 14 6 3.4264 -6.8137 -1.4485 15 7 2.7979 -7.5791 -0.5831 16 14 4.1982 -7.5673 -2.9736 17 1 5.5999 -7.9581 -2.6773 18 1 3.4244 -8.7683 -3.3782 19 1 4.1841 -6.5742 -4.0777 20 6 2.0781 -2.5007 0.0015 21 6 2.3234 -1.1125 0.0005 22 1 -0.3633 0.0005 -1.0276 23 1 -0.3633 -0.8901 0.5135 24 1 -0.3633 0.8898 0.5142 25 1 4.3997 1.3751 0.0003 26 1 5.6838 -1.1545 0.0026 27 1 5.2815 -3.5378 -0.0026 28 1 3.0748 -5.0258 2.1397 29 1 3.3524 -6.5417 1.2494 30 1 4.5970 -5.2689 1.2498 31 1 2.7348 -8.5347 -0.7369 32 1 1.0658 -2.8770 0.0017 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260103477.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:42 Heat of formation + Delta-G solvation = 55.572224 kcal Electronic energy + Delta-G solvation = -15436.282836 eV Core-core repulsion = 12975.861858 eV Total energy + Delta-G solvation = -2460.420979 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.61326 -38.96192 -36.23355 -34.51822 -32.66927 -31.33922 -30.47122 -27.26200 -27.02229 -24.57956 -23.83493 -22.20731 -20.93815 -18.64617 -18.29663 -17.09299 -16.81184 -16.73110 -16.09576 -15.46196 -15.10009 -14.54121 -14.03013 -13.93108 -13.77349 -13.43432 -13.08249 -13.03593 -12.83611 -12.62660 -12.39889 -12.17097 -12.09713 -11.51827 -11.29951 -11.11036 -10.83451 -10.47762 -10.04862 -8.22236 -8.05490 -6.25037 0.03790 0.45954 1.41905 1.44254 1.53076 1.82884 2.12591 2.41035 2.64295 3.17742 3.65366 3.67398 3.96083 4.00856 4.09574 4.38546 4.52517 4.70302 4.84257 4.86975 4.93255 5.04234 5.08733 5.16498 5.23599 5.26936 5.47633 5.60696 5.68029 5.80643 5.97807 6.06443 6.32225 6.41180 6.83406 6.97836 7.43455 8.93802 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037402 B = 0.006664 C = 0.006445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.441240 B = 4200.750572 C = 4343.701536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.035 4.035 3 N -0.484 5.484 4 C 0.132 3.868 5 N -0.375 5.375 6 C 0.044 3.956 7 C -0.121 4.121 8 C -0.048 4.048 9 C 0.075 3.925 10 H 0.006 0.994 11 C -0.122 4.122 12 C -0.522 4.522 13 H 0.054 0.946 14 C 0.017 3.983 15 N -0.916 5.916 16 Si 0.953 3.047 17 H -0.271 1.271 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.122 4.122 21 C -0.001 4.001 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.248 0.752 26 H 0.209 0.791 27 H 0.154 0.846 28 H 0.022 0.978 29 H 0.060 0.940 30 H 0.039 0.961 31 H 0.262 0.738 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.128 11.220 1.629 11.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.169 4.169 3 N -0.199 5.199 4 C -0.143 4.143 5 N -0.046 5.046 6 C -0.075 4.075 7 C -0.142 4.142 8 C -0.051 4.051 9 C 0.057 3.943 10 H 0.024 0.976 11 C -0.180 4.180 12 C -0.560 4.560 13 H 0.072 0.928 14 C -0.182 4.182 15 N -0.555 5.555 16 Si 0.779 3.221 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.142 4.142 21 C -0.111 4.111 22 H 0.090 0.910 23 H 0.092 0.908 24 H 0.096 0.904 25 H 0.264 0.736 26 H 0.225 0.775 27 H 0.172 0.828 28 H 0.041 0.959 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.930 11.964 1.660 12.429 hybrid contribution 0.485 -1.683 -0.749 1.905 sum 3.415 10.280 0.912 10.871 Atomic orbital electron populations 1.19996 0.85725 1.03124 1.02633 1.21273 0.97391 0.86444 1.11765 1.69803 1.01321 1.30850 1.17952 1.25481 0.97550 0.80163 1.11057 1.43024 1.06704 1.08262 1.46639 1.22158 0.92854 0.88698 1.03756 1.20975 0.98036 0.94270 1.00884 1.20388 0.93067 0.97299 0.94389 1.17716 0.95618 0.86193 0.94789 0.97565 1.21619 0.98677 1.02339 0.95358 1.21312 1.35534 0.92622 1.06500 0.92800 1.25671 0.95693 0.97711 0.99097 1.70001 1.43284 1.05392 1.36811 0.85634 0.78670 0.77829 0.79995 1.19695 1.21145 1.19740 1.20362 1.00195 0.88846 1.04768 1.19607 0.85166 0.94849 1.11451 0.90995 0.90791 0.90430 0.73587 0.77464 0.82796 0.95859 0.92108 0.94184 0.92853 0.84747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.54 10.44 71.24 0.74 -0.80 16 2 C -0.03 -1.18 7.21 42.26 0.30 -0.88 16 3 N -0.48 -15.95 11.19 -186.14 -2.08 -18.04 16 4 C 0.13 3.63 12.75 180.15 2.30 5.92 16 5 N -0.37 -11.64 2.94 -351.44 -1.03 -12.67 16 6 C 0.04 1.20 10.97 83.06 0.91 2.11 16 7 C -0.12 -4.11 8.69 22.08 0.19 -3.92 16 8 C -0.05 -1.98 4.72 -19.78 -0.09 -2.07 16 9 C 0.08 3.63 2.48 -12.29 -0.03 3.60 16 10 H 0.01 0.33 7.87 -2.38 -0.02 0.31 16 11 C -0.12 -5.61 8.79 71.98 0.63 -4.98 16 12 C -0.52 -27.24 8.26 25.60 0.21 -27.02 16 13 H 0.05 2.78 7.61 -2.91 -0.02 2.76 16 14 C 0.02 0.92 5.30 84.65 0.45 1.37 16 15 N -0.92 -50.90 11.32 21.45 0.24 -50.65 16 16 Si 0.95 41.97 29.54 68.60 2.03 44.00 16 17 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 18 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 20 C -0.12 -4.75 9.71 22.39 0.22 -4.54 16 21 C 0.00 -0.04 6.74 38.76 0.26 0.22 16 22 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.07 1.86 8.14 -2.39 -0.02 1.85 16 24 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.25 4.14 8.06 -2.92 -0.02 4.11 16 26 H 0.21 3.43 8.06 -2.91 -0.02 3.41 16 27 H 0.15 4.97 7.62 -2.91 -0.02 4.94 16 28 H 0.02 0.95 8.14 -2.39 -0.02 0.94 16 29 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 30 H 0.04 1.69 7.42 -2.39 -0.02 1.67 16 31 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 32 H 0.13 5.07 7.94 -2.91 -0.02 5.04 16 Total: -1.00 -63.52 273.89 6.35 -57.16 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 1.11 Total: 11.18 kcal Atomic # 6 Polarization: -37.08 SS G_CDS: 6.10 Total: -30.99 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -2.88 Total: -81.36 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -63.52 6.35 -57.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260103477.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.736 kcal (2) G-P(sol) polarization free energy of solvation -63.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds