Wall clock time and date at job start Mon Mar 30 2020 03:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37972 * 119.92490 * 2 1 4 4 C 1.39611 * 119.84921 * 180.02562 * 3 2 1 5 5 C 1.43197 * 120.15149 * 179.97438 * 4 3 2 6 6 N 4.80126 * 134.70055 * 359.96386 * 2 1 3 7 7 C 1.39656 * 119.69500 * 359.96163 * 4 3 2 8 8 C 1.37925 * 119.84897 * 0.02562 * 7 4 3 9 9 C 1.50703 * 119.92065 * 180.02562 * 8 7 4 10 10 H 1.09001 * 109.47020 * 219.99488 * 9 8 7 11 11 N 1.46893 * 109.47619 * 340.00508 * 9 8 7 12 12 C 1.50702 * 109.46562 * 100.00437 * 9 8 7 13 13 H 1.08000 * 120.00323 * 359.97438 * 12 9 8 14 14 C 1.37886 * 119.99915 * 179.97438 * 12 9 8 15 15 N 1.31516 * 119.99708 * 0.02562 * 14 12 9 16 16 Si 1.86792 * 120.00091 * 179.97438 * 14 12 9 17 17 H 1.48502 * 109.47111 * 60.00335 * 16 14 12 18 18 H 1.48502 * 109.47164 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47415 * 300.00236 * 16 14 12 20 20 C 1.38345 * 119.92794 * 179.97438 * 2 1 3 21 21 C 1.50698 * 119.84175 * 359.97163 * 20 2 1 22 22 H 1.09002 * 109.47090 * 270.02031 * 1 2 3 23 23 H 1.09003 * 109.47111 * 30.02333 * 1 2 3 24 24 H 1.08999 * 109.47342 * 150.01984 * 1 2 3 25 25 H 1.07994 * 120.07458 * 359.97438 * 3 2 1 26 26 H 1.08007 * 120.07559 * 180.29703 * 7 4 3 27 27 H 1.00897 * 111.00377 * 59.99373 * 11 9 8 28 28 H 1.00902 * 110.99842 * 183.95383 * 11 9 8 29 29 H 0.96991 * 120.00030 * 179.97438 * 15 14 12 30 30 H 1.09001 * 109.47688 * 270.02629 * 21 20 2 31 31 H 1.09004 * 109.47350 * 30.03234 * 21 20 2 32 32 H 1.09002 * 109.47045 * 150.02473 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1952 1.1958 0.0000 4 6 3.5913 1.1939 -0.0005 5 6 4.3122 2.4312 -0.0011 6 7 4.8842 3.4127 -0.0022 7 6 4.2816 -0.0201 -0.0003 8 6 3.5809 -1.2081 0.0000 9 6 4.3241 -2.5192 0.0009 10 1 3.8186 -3.2238 -0.6595 11 7 5.6979 -2.3037 -0.4722 12 6 4.3565 -3.0772 1.4004 13 1 3.8863 -2.5363 2.2084 14 6 4.9863 -4.2782 1.6494 15 7 5.5593 -4.9365 0.6655 16 14 5.0271 -4.9695 3.3842 17 1 3.6384 -5.1867 3.8632 18 1 5.7583 -6.2621 3.3849 19 1 5.7165 -4.0097 4.2835 20 6 2.1972 -1.1990 0.0005 21 6 1.4384 -2.5010 0.0018 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3634 -0.8901 -0.5135 25 1 1.6553 2.1310 -0.0004 26 1 5.3616 -0.0287 0.0042 27 1 6.1879 -1.6536 0.1239 28 1 6.1975 -3.1775 -0.5421 29 1 6.0027 -5.7812 0.8406 30 1 1.2555 -2.8141 1.0297 31 1 0.4865 -2.3674 -0.5123 32 1 2.0244 -3.2635 -0.5114 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260106148.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:48 Heat of formation + Delta-G solvation = 23.552271 kcal Electronic energy + Delta-G solvation = -15412.841262 eV Core-core repulsion = 12951.031794 eV Total energy + Delta-G solvation = -2461.809468 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.82095 -37.75517 -36.65777 -34.29351 -33.73686 -31.78227 -28.55558 -28.02253 -27.43544 -24.65213 -23.04310 -20.94774 -18.97815 -18.53565 -17.14941 -16.60956 -16.38421 -15.60454 -15.28121 -14.71541 -14.60112 -14.51607 -14.27797 -13.87925 -13.78689 -13.48062 -13.16818 -13.12186 -12.90042 -12.79331 -12.44430 -12.34711 -12.26537 -11.85258 -11.75023 -11.24251 -10.65796 -9.45790 -9.37369 -9.13190 -8.07987 -6.31784 -0.05354 0.59921 1.40542 1.42981 1.49220 1.62607 1.99736 2.40145 2.94189 3.02604 3.10578 4.00935 4.05699 4.19285 4.32752 4.44820 4.62164 4.81391 4.87667 4.96849 4.98889 5.08600 5.16208 5.31366 5.42005 5.47086 5.52595 5.65399 5.70457 5.98870 6.10168 6.17898 6.46181 6.69263 6.96874 7.12421 7.43207 8.86394 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.024338 B = 0.008378 C = 0.007137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.180675 B = 3341.385628 C = 3922.179541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.091 4.091 3 C -0.077 4.077 4 C -0.051 4.051 5 C 0.287 3.713 6 N -0.469 5.469 7 C -0.074 4.074 8 C -0.060 4.060 9 C 0.245 3.755 10 H 0.030 0.970 11 N -0.848 5.848 12 C -0.546 4.546 13 H 0.048 0.952 14 C 0.026 3.974 15 N -0.915 5.915 16 Si 0.950 3.050 17 H -0.271 1.271 18 H -0.286 1.286 19 H -0.278 1.278 20 C -0.062 4.062 21 C -0.111 4.111 22 H 0.080 0.920 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.155 0.845 26 H 0.122 0.878 27 H 0.316 0.684 28 H 0.346 0.654 29 H 0.266 0.734 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.239 5.899 -0.575 11.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.091 4.091 3 C -0.097 4.097 4 C -0.054 4.054 5 C -0.027 4.027 6 N -0.145 5.145 7 C -0.095 4.095 8 C -0.061 4.061 9 C 0.135 3.865 10 H 0.047 0.953 11 N -0.377 5.377 12 C -0.586 4.586 13 H 0.066 0.934 14 C -0.174 4.174 15 N -0.555 5.555 16 Si 0.776 3.224 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.204 1.204 20 C -0.063 4.063 21 C -0.167 4.167 22 H 0.099 0.901 23 H 0.104 0.896 24 H 0.098 0.902 25 H 0.173 0.827 26 H 0.139 0.861 27 H 0.126 0.874 28 H 0.161 0.839 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.596 7.530 -1.303 12.267 hybrid contribution 0.819 -1.544 1.837 2.536 sum -8.776 5.987 0.534 10.637 Atomic orbital electron populations 1.20895 0.88164 1.04199 1.03438 1.19903 0.97875 0.90935 1.00365 1.21121 0.90774 0.99197 0.98650 1.15964 0.93076 0.85732 1.10658 1.25851 0.92348 0.92465 0.92003 1.81181 1.09566 1.12366 1.11373 1.20916 1.00101 0.90358 0.98108 1.20097 0.93894 0.95375 0.96696 1.17837 0.87175 0.88568 0.92890 0.95263 1.59566 1.05440 1.17705 1.55016 1.21901 1.35808 1.05742 0.95163 0.93367 1.25627 0.94872 0.96726 1.00179 1.69816 1.36871 1.16251 1.32581 0.85739 0.78358 0.77421 0.80873 1.19581 1.21131 1.20360 1.20065 0.92745 0.96392 0.97076 1.20859 0.99794 0.93489 1.02570 0.90116 0.89648 0.90218 0.82748 0.86056 0.87398 0.83905 0.92434 0.91175 0.88887 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.93 9.59 71.23 0.68 -1.25 16 2 C -0.09 -2.36 5.87 -19.90 -0.12 -2.48 16 3 C -0.08 -1.97 9.41 22.54 0.21 -1.76 16 4 C -0.05 -1.57 5.73 -21.36 -0.12 -1.69 16 5 C 0.29 9.15 15.33 88.33 1.35 10.50 16 6 N -0.47 -16.21 18.54 19.00 0.35 -15.85 16 7 C -0.07 -2.69 8.96 22.54 0.20 -2.49 16 8 C -0.06 -2.36 5.02 -19.90 -0.10 -2.46 16 9 C 0.25 11.43 2.39 43.43 0.10 11.53 16 10 H 0.03 1.52 6.40 -2.39 -0.02 1.51 16 11 N -0.85 -39.01 8.66 -174.96 -1.52 -40.52 16 12 C -0.55 -27.48 8.46 25.60 0.22 -27.26 16 13 H 0.05 2.45 7.74 -2.91 -0.02 2.43 16 14 C 0.03 1.34 5.38 84.66 0.46 1.80 16 15 N -0.92 -48.56 11.54 21.45 0.25 -48.31 16 16 Si 0.95 41.16 29.54 68.60 2.03 43.18 16 17 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 18 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 20 C -0.06 -2.04 5.88 -19.81 -0.12 -2.16 16 21 C -0.11 -3.44 8.98 71.24 0.64 -2.80 16 22 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.08 1.13 8.08 -2.39 -0.02 1.11 16 24 H 0.08 1.29 5.93 -2.39 -0.01 1.27 16 25 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 26 H 0.12 4.53 6.24 -2.91 -0.02 4.51 16 27 H 0.32 13.89 7.27 -89.70 -0.65 13.24 16 28 H 0.35 17.23 7.08 -89.69 -0.63 16.59 16 29 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 30 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.09 2.14 5.93 -2.38 -0.01 2.13 16 32 H 0.05 1.90 6.10 -2.39 -0.01 1.88 16 Total: -1.00 -56.17 274.02 4.40 -51.76 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: -0.12 Total: 30.26 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: 3.41 Total: -20.52 kcal Atomic # 7 Polarization: -103.77 SS G_CDS: -0.92 Total: -104.68 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.18 kcal Total: -56.17 4.40 -51.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260106148.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.315 kcal (2) G-P(sol) polarization free energy of solvation -56.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds