Wall clock time and date at job start Mon Mar 30 2020 03:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86797 * 119.99586 * 2 1 4 4 H 1.48504 * 109.46982 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47551 * 299.99769 * 3 2 1 6 6 H 1.48500 * 109.47112 * 59.99939 * 3 2 1 7 7 C 1.39940 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99557 * 167.30777 * 7 2 1 9 9 C 1.41046 * 119.99850 * 347.30656 * 7 2 1 10 10 C 1.40738 * 120.30543 * 333.58563 * 9 7 2 11 11 C 1.36455 * 119.94468 * 180.29532 * 10 9 7 12 12 C 1.38884 * 120.58797 * 359.72979 * 11 10 9 13 13 C 1.38179 * 120.62506 * 359.97438 * 12 11 10 14 14 C 1.38714 * 120.03078 * 0.02712 * 13 12 11 15 15 N 1.38952 * 120.28953 * 179.97438 * 14 13 12 16 16 C 1.37188 * 120.00721 * 351.01693 * 15 14 13 17 17 N 1.28729 * 124.49017 * 353.18022 * 16 15 14 18 18 C 1.46734 * 112.31956 * 180.10880 * 17 16 15 19 19 C 1.54642 * 105.24041 * 343.63316 * 18 17 16 20 20 C 1.51259 * 124.50048 * 173.18502 * 16 15 14 21 21 H 0.96996 * 120.00091 * 0.02562 * 1 2 3 22 22 H 1.07998 * 120.03208 * 0.02562 * 10 9 7 23 23 H 1.07999 * 119.70662 * 179.74587 * 11 10 9 24 24 H 1.08007 * 119.68981 * 180.02562 * 12 11 10 25 25 H 1.08001 * 119.98716 * 180.02562 * 13 12 11 26 26 H 0.97003 * 119.99793 * 171.01052 * 15 14 13 27 27 H 1.08994 * 110.30481 * 102.60275 * 18 17 16 28 28 H 1.09005 * 110.30152 * 224.66288 * 18 17 16 29 29 H 1.08999 * 111.11591 * 142.21875 * 19 18 17 30 30 H 1.09007 * 111.11385 * 266.35464 * 19 18 17 31 31 H 1.09005 * 110.54584 * 314.63322 * 20 16 15 32 32 H 1.08995 * 110.54788 * 77.43837 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.7026 1.3465 0.0006 5 1 1.8839 2.3965 -1.2125 6 1 1.8838 2.3965 1.2125 7 6 2.0084 -1.2119 0.0005 8 1 3.0686 -1.2233 -0.2050 9 6 1.3290 -2.4183 0.2695 10 6 0.1589 -2.4153 1.0515 11 6 -0.4891 -3.5876 1.3122 12 6 -0.0078 -4.7886 0.8074 13 6 1.1354 -4.8185 0.0318 14 6 1.8146 -3.6421 -0.2492 15 7 2.9651 -3.6660 -1.0281 16 6 3.5381 -4.8650 -1.3689 17 7 3.1600 -6.0087 -0.9150 18 6 3.9598 -7.1143 -1.4546 19 6 4.6868 -6.5267 -2.6865 20 6 4.6978 -5.0184 -2.3278 21 1 -0.4850 0.8400 -0.0004 22 1 -0.2234 -1.4867 1.4487 23 1 -1.3844 -3.5813 1.9161 24 1 -0.5325 -5.7078 1.0224 25 1 1.5003 -5.7581 -0.3558 26 1 3.3630 -2.8348 -1.3309 27 1 4.6840 -7.4538 -0.7142 28 1 3.3122 -7.9382 -1.7548 29 1 5.7002 -6.9196 -2.7687 30 1 4.1214 -6.7095 -3.6003 31 1 4.5395 -4.4122 -3.2198 32 1 5.6348 -4.7475 -1.8413 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260110758.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:22 Heat of formation + Delta-G solvation = 34.483504 kcal Electronic energy + Delta-G solvation = -15462.650148 eV Core-core repulsion = 13001.314694 eV Total energy + Delta-G solvation = -2461.335454 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.76347 -39.09052 -35.86467 -35.41580 -31.67813 -30.76782 -30.25481 -28.08535 -26.91065 -23.19524 -22.70723 -21.89560 -20.00246 -19.05996 -18.05739 -16.98235 -16.82774 -16.58226 -15.93129 -15.02695 -14.61941 -14.42968 -14.18589 -14.09521 -13.71757 -13.21886 -13.08651 -12.96206 -12.75354 -12.48943 -12.16914 -12.10107 -11.70148 -11.55125 -11.34615 -11.04298 -9.94319 -9.66422 -9.22038 -8.60796 -8.18817 -6.19703 0.92380 1.16132 1.41878 1.54671 1.56005 1.87884 2.23761 2.50220 2.84943 3.48463 3.82365 3.84459 4.11437 4.44677 4.52389 4.63238 4.78321 4.85011 4.89461 4.90730 5.01398 5.06051 5.22416 5.27402 5.38594 5.48138 5.79554 5.91949 6.02111 6.28375 6.35408 6.45977 6.74352 6.82780 7.02239 7.17106 7.46407 8.43064 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027112 B = 0.008329 C = 0.006516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.499475 B = 3360.852203 C = 4295.786815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.032 3.968 3 Si 0.983 3.017 4 H -0.254 1.254 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.492 4.492 8 H 0.081 0.919 9 C 0.055 3.945 10 C -0.173 4.173 11 C -0.138 4.138 12 C -0.221 4.221 13 C -0.150 4.150 14 C 0.042 3.958 15 N -0.623 5.623 16 C 0.357 3.643 17 N -0.626 5.626 18 C 0.032 3.968 19 C -0.133 4.133 20 C -0.122 4.122 21 H 0.284 0.716 22 H 0.106 0.894 23 H 0.103 0.897 24 H 0.109 0.891 25 H 0.164 0.836 26 H 0.417 0.583 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.046 -4.919 -5.183 11.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.181 4.181 3 Si 0.804 3.196 4 H -0.177 1.177 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.523 4.523 8 H 0.100 0.900 9 C 0.050 3.950 10 C -0.194 4.194 11 C -0.157 4.157 12 C -0.241 4.241 13 C -0.172 4.172 14 C -0.054 4.054 15 N -0.249 5.249 16 C 0.078 3.922 17 N -0.354 5.354 18 C -0.098 4.098 19 C -0.172 4.172 20 C -0.163 4.163 21 H 0.095 0.905 22 H 0.124 0.876 23 H 0.122 0.878 24 H 0.127 0.873 25 H 0.181 0.819 26 H 0.255 0.745 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.126 0.874 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.195 -5.346 -4.584 10.806 hybrid contribution 0.472 1.309 -0.345 1.434 sum 8.667 -4.037 -4.929 10.757 Atomic orbital electron populations 1.69911 1.08995 1.29998 1.37307 1.26703 0.95473 1.04338 0.91574 0.85143 0.79515 0.76414 0.78515 1.17693 1.19374 1.19679 1.19511 0.96366 0.91315 1.45072 0.90049 1.17674 0.93969 0.91692 0.91640 1.20918 0.99077 0.97025 1.02342 1.20689 0.99800 0.93397 1.01818 1.20676 0.99937 0.96770 1.06710 1.22007 0.95672 0.99267 1.00239 1.18079 0.91662 0.94772 1.00881 1.40937 1.25837 1.05637 1.52468 1.22619 0.91002 0.86725 0.91815 1.72966 1.30928 1.00009 1.31476 1.22995 0.95802 0.95434 0.95558 1.23016 1.02948 0.92669 0.98548 1.22322 0.96169 0.99394 0.98387 0.90534 0.87568 0.87842 0.87278 0.81939 0.74493 0.90849 0.90474 0.87392 0.90296 0.88374 0.87644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.98 10.78 21.83 0.24 -43.74 16 2 C 0.03 1.61 5.23 85.25 0.45 2.05 16 3 Si 0.98 37.49 29.58 68.60 2.03 39.52 16 4 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16 5 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 6 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 7 C -0.49 -25.53 8.43 23.37 0.20 -25.33 16 8 H 0.08 3.90 6.86 -2.91 -0.02 3.88 16 9 C 0.05 2.97 5.58 -21.17 -0.12 2.85 16 10 C -0.17 -9.55 8.62 22.46 0.19 -9.35 16 11 C -0.14 -6.94 9.97 22.01 0.22 -6.72 16 12 C -0.22 -10.74 10.03 22.41 0.22 -10.52 16 13 C -0.15 -7.45 9.02 22.37 0.20 -7.24 16 14 C 0.04 2.13 6.64 38.93 0.26 2.39 16 15 N -0.62 -25.88 5.38 -177.37 -0.95 -26.83 16 16 C 0.36 12.66 7.77 138.11 1.07 13.74 16 17 N -0.63 -23.39 7.57 -333.62 -2.53 -25.91 16 18 C 0.03 0.87 7.81 86.89 0.68 1.55 16 19 C -0.13 -2.66 7.27 31.85 0.23 -2.43 16 20 C -0.12 -2.87 6.90 30.72 0.21 -2.65 16 21 H 0.28 13.59 8.30 -92.71 -0.77 12.82 16 22 H 0.11 6.07 6.10 -2.91 -0.02 6.05 16 23 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 24 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 25 H 0.16 7.74 4.73 -9.50 -0.04 7.69 16 26 H 0.42 15.97 7.19 -92.71 -0.67 15.30 16 27 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 29 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -62.99 266.05 3.04 -59.95 By element: Atomic # 1 Polarization: 38.25 SS G_CDS: 0.44 Total: 38.68 kcal Atomic # 6 Polarization: -45.48 SS G_CDS: 3.82 Total: -41.66 kcal Atomic # 7 Polarization: -93.24 SS G_CDS: -3.24 Total: -96.48 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 2.03 Total: 39.52 kcal Total: -62.99 3.04 -59.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260110758.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.429 kcal (2) G-P(sol) polarization free energy of solvation -62.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds