Wall clock time and date at job start Mon Mar 30 2020 03:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.37961 * 120.07654 * 2 1 4 4 C 1.38346 * 120.15011 * 179.76887 * 3 2 1 5 5 C 1.50696 * 119.84908 * 180.25952 * 4 3 2 6 6 C 1.38389 * 120.30365 * 0.51166 * 4 3 2 7 7 C 1.50690 * 119.92431 * 179.76348 * 6 4 3 8 8 H 1.09002 * 109.47042 * 39.72772 * 7 6 4 9 9 N 1.46897 * 109.47432 * 159.72568 * 7 6 4 10 10 C 1.50702 * 109.47596 * 279.72720 * 7 6 4 11 11 H 1.08004 * 119.99470 * 335.49301 * 10 7 6 12 12 C 1.37870 * 120.00279 * 155.48651 * 10 7 6 13 13 N 1.31513 * 120.00368 * 7.06916 * 12 10 7 14 14 Si 1.86802 * 120.00084 * 187.06685 * 12 10 7 15 15 H 1.48507 * 109.47214 * 270.00384 * 14 12 10 16 16 H 1.48496 * 109.47184 * 29.99989 * 14 12 10 17 17 H 1.48499 * 109.47201 * 150.00617 * 14 12 10 18 18 C 1.37928 * 120.14762 * 359.49089 * 6 4 3 19 19 C 1.39605 * 120.07307 * 180.02562 * 2 1 3 20 20 C 1.43198 * 120.15248 * 359.97438 * 19 2 1 21 21 N 3.48497 * 80.49381 * 180.02562 * 2 1 3 22 22 H 1.09007 * 109.46673 * 269.97886 * 1 2 3 23 23 H 1.08999 * 109.46636 * 29.97128 * 1 2 3 24 24 H 1.08995 * 109.47186 * 149.97529 * 1 2 3 25 25 H 1.08004 * 119.92808 * 0.04817 * 3 2 1 26 26 H 1.09001 * 109.46993 * 270.25250 * 5 4 3 27 27 H 1.09002 * 109.47325 * 30.25345 * 5 4 3 28 28 H 1.08999 * 109.47288 * 150.25584 * 5 4 3 29 29 H 1.00905 * 110.99840 * 66.86276 * 9 7 6 30 30 H 1.00899 * 111.00679 * 190.81744 * 9 7 6 31 31 H 0.97004 * 119.99583 * 355.34382 * 13 12 10 32 32 H 1.08002 * 120.06983 * 180.27355 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5819 1.1956 0.0048 5 6 4.3303 2.5036 0.0107 6 6 4.2818 0.0018 -0.0010 7 6 5.7886 0.0137 -0.0011 8 1 6.1457 0.8038 0.6596 9 7 6.2887 -1.2838 0.4726 10 6 6.2891 0.2645 -1.4003 11 1 5.6686 0.0152 -2.2484 12 6 7.5388 0.8123 -1.5977 13 7 8.3489 0.9871 -0.5766 14 14 8.0815 1.3060 -3.3156 15 1 8.7547 0.1564 -3.9716 16 1 6.8948 1.7059 -4.1137 17 1 9.0263 2.4482 -3.2271 18 6 3.6032 -1.1990 -0.0010 19 6 2.2067 -1.2081 -0.0005 20 6 1.4956 -2.4511 -0.0005 21 7 0.9315 -3.4371 -0.0015 22 1 -0.3633 -0.0004 1.0278 23 1 -0.3632 0.8903 -0.5134 24 1 -0.3633 -0.8897 -0.5142 25 1 1.6586 2.1292 0.0008 26 1 4.5104 2.8238 -1.0155 27 1 3.7384 3.2586 0.5283 28 1 5.2834 2.3747 0.5236 29 1 6.0661 -2.0181 -0.1827 30 1 7.2813 -1.2461 0.6498 31 1 8.0433 0.7941 0.3236 32 1 4.1506 -2.1300 -0.0011 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260112794.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:22 Heat of formation + Delta-G solvation = 32.286827 kcal Electronic energy + Delta-G solvation = -15420.310965 eV Core-core repulsion = 12958.880256 eV Total energy + Delta-G solvation = -2461.430709 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.54132 -36.48306 -35.23146 -32.82851 -32.07627 -30.64530 -27.30685 -27.05195 -25.21072 -22.75190 -21.51769 -20.47247 -17.85503 -16.81029 -15.87014 -14.98985 -14.37676 -14.10348 -13.93480 -13.77818 -13.16505 -13.04414 -12.93223 -12.64582 -12.48845 -12.33252 -12.19835 -12.02555 -11.48612 -11.23845 -10.98096 -10.90806 -10.58388 -10.26686 -9.76102 -9.53273 -8.78509 -8.33836 -8.01365 -7.40241 -6.53952 -4.34610 1.20714 1.83592 2.93027 3.29313 3.33015 3.35027 3.50578 4.23296 4.25490 4.39303 5.01365 5.08734 5.12909 5.43921 5.47184 5.64070 5.70647 5.78319 5.94841 6.08520 6.12911 6.20845 6.31747 6.47209 6.70203 6.74584 6.80472 6.83850 7.30439 7.41951 7.75842 7.79196 8.14511 8.36608 8.55367 8.64115 9.37256 10.78045 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030335 B = 0.007654 C = 0.007034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.811566 B = 3657.156149 C = 3979.845912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.060 4.060 3 C -0.128 4.128 4 C -0.046 4.046 5 C -0.111 4.111 6 C -0.034 4.034 7 C 0.222 3.778 8 H 0.059 0.941 9 N -0.857 5.857 10 C -0.620 4.620 11 H 0.051 0.949 12 C 0.031 3.969 13 N -0.904 5.904 14 Si 1.067 2.933 15 H -0.288 1.288 16 H -0.287 1.287 17 H -0.283 1.283 18 C -0.055 4.055 19 C -0.056 4.056 20 C 0.273 3.727 21 N -0.447 5.447 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.124 0.876 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.323 0.677 30 H 0.334 0.666 31 H 0.271 0.729 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.168 2.652 0.870 9.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.063 4.063 3 C -0.146 4.146 4 C -0.047 4.047 5 C -0.167 4.167 6 C -0.034 4.034 7 C 0.113 3.887 8 H 0.077 0.923 9 N -0.384 5.384 10 C -0.660 4.660 11 H 0.069 0.931 12 C -0.176 4.176 13 N -0.540 5.540 14 Si 0.895 3.105 15 H -0.214 1.214 16 H -0.213 1.213 17 H -0.208 1.208 18 C -0.076 4.076 19 C -0.059 4.059 20 C -0.041 4.041 21 N -0.123 5.123 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.078 0.922 25 H 0.142 0.858 26 H 0.096 0.904 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.134 0.866 30 H 0.145 0.855 31 H 0.082 0.918 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.264 1.838 0.650 9.467 hybrid contribution -0.452 -0.257 -0.135 0.537 sum -9.715 1.581 0.516 9.857 Atomic orbital electron populations 1.20794 0.91398 1.02599 1.02279 1.19625 0.95294 0.91653 0.99716 1.20688 0.93474 0.96728 1.03753 1.19978 0.92964 0.95830 0.95951 1.20794 1.00124 0.92821 1.02974 1.20107 0.97795 0.90984 0.94557 1.18220 0.85764 0.89357 0.95376 0.92317 1.59577 1.20118 1.07651 1.51063 1.22470 1.04465 1.46902 0.92159 0.93072 1.25839 0.92986 0.93330 1.05417 1.70840 1.36214 1.46754 1.00154 0.83567 0.75784 0.77064 0.74128 1.21441 1.21299 1.20838 1.20991 0.90626 0.99431 0.96561 1.15900 0.92466 0.86059 1.11478 1.25826 0.92697 0.92793 0.92790 1.81162 1.09561 1.11096 1.10472 0.91139 0.91106 0.92150 0.85833 0.90423 0.92746 0.90605 0.86632 0.85485 0.91776 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 9.61 36.01 0.35 -0.99 16 2 C -0.06 -0.89 5.91 -104.21 -0.62 -1.51 16 3 C -0.13 -1.91 9.34 -39.64 -0.37 -2.28 16 4 C -0.05 -0.81 5.88 -104.53 -0.61 -1.42 16 5 C -0.11 -1.84 9.40 36.00 0.34 -1.50 16 6 C -0.03 -0.66 5.06 -104.68 -0.53 -1.19 16 7 C 0.22 4.91 2.01 -70.02 -0.14 4.77 16 8 H 0.06 1.41 5.28 -51.93 -0.27 1.13 16 9 N -0.86 -17.90 8.51 -6.66 -0.06 -17.95 16 10 C -0.62 -15.32 8.29 -34.44 -0.29 -15.61 16 11 H 0.05 1.32 7.81 -52.48 -0.41 0.91 16 12 C 0.03 0.78 5.45 -17.82 -0.10 0.68 16 13 N -0.90 -24.30 13.63 55.43 0.76 -23.55 16 14 Si 1.07 23.28 29.91 -169.99 -5.08 18.19 16 15 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.29 -6.05 7.11 56.52 0.40 -5.64 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 C -0.06 -1.01 8.98 -39.17 -0.35 -1.36 16 19 C -0.06 -0.92 5.73 -106.93 -0.61 -1.53 16 20 C 0.27 4.58 13.80 -22.48 -0.31 4.27 16 21 N -0.45 -7.95 18.54 41.84 0.78 -7.17 16 22 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 24 H 0.06 0.73 7.09 -51.93 -0.37 0.37 16 25 H 0.12 1.49 8.06 -52.48 -0.42 1.06 16 26 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16 28 H 0.08 1.41 6.10 -51.93 -0.32 1.09 16 29 H 0.32 6.53 7.63 -39.29 -0.30 6.23 16 30 H 0.33 7.23 8.44 -39.29 -0.33 6.90 16 31 H 0.27 7.18 6.22 -40.82 -0.25 6.93 16 32 H 0.13 2.37 6.42 -52.49 -0.34 2.03 16 LS Contribution 276.86 15.07 4.17 4.17 Total: -1.00 -26.59 276.86 -6.18 -32.76 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -3.49 Total: 11.22 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -3.24 Total: -17.67 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: 1.47 Total: -48.67 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -5.08 Total: 18.19 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -26.59 -6.18 -32.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260112794.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.049 kcal (2) G-P(sol) polarization free energy of solvation -26.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds