Wall clock time and date at job start Mon Mar 30 2020 03:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.37961 * 120.07654 * 2 1 4 4 C 1.38346 * 120.15011 * 179.76887 * 3 2 1 5 5 C 1.50696 * 119.84908 * 180.25952 * 4 3 2 6 6 C 1.38389 * 120.30365 * 0.51166 * 4 3 2 7 7 C 1.50690 * 119.92431 * 179.76348 * 6 4 3 8 8 H 1.09002 * 109.47042 * 39.72772 * 7 6 4 9 9 N 1.46897 * 109.47432 * 159.72568 * 7 6 4 10 10 C 1.50702 * 109.47596 * 279.72720 * 7 6 4 11 11 H 1.08004 * 119.99470 * 335.49301 * 10 7 6 12 12 C 1.37870 * 120.00279 * 155.48651 * 10 7 6 13 13 N 1.31513 * 120.00368 * 7.06916 * 12 10 7 14 14 Si 1.86802 * 120.00084 * 187.06685 * 12 10 7 15 15 H 1.48507 * 109.47214 * 270.00384 * 14 12 10 16 16 H 1.48496 * 109.47184 * 29.99989 * 14 12 10 17 17 H 1.48499 * 109.47201 * 150.00617 * 14 12 10 18 18 C 1.37928 * 120.14762 * 359.49089 * 6 4 3 19 19 C 1.39605 * 120.07307 * 180.02562 * 2 1 3 20 20 C 1.43198 * 120.15248 * 359.97438 * 19 2 1 21 21 N 3.48497 * 80.49381 * 180.02562 * 2 1 3 22 22 H 1.09007 * 109.46673 * 269.97886 * 1 2 3 23 23 H 1.08999 * 109.46636 * 29.97128 * 1 2 3 24 24 H 1.08995 * 109.47186 * 149.97529 * 1 2 3 25 25 H 1.08004 * 119.92808 * 0.04817 * 3 2 1 26 26 H 1.09001 * 109.46993 * 270.25250 * 5 4 3 27 27 H 1.09002 * 109.47325 * 30.25345 * 5 4 3 28 28 H 1.08999 * 109.47288 * 150.25584 * 5 4 3 29 29 H 1.00905 * 110.99840 * 66.86276 * 9 7 6 30 30 H 1.00899 * 111.00679 * 190.81744 * 9 7 6 31 31 H 0.97004 * 119.99583 * 355.34382 * 13 12 10 32 32 H 1.08002 * 120.06983 * 180.27355 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5819 1.1956 0.0048 5 6 4.3303 2.5036 0.0107 6 6 4.2818 0.0018 -0.0010 7 6 5.7886 0.0137 -0.0011 8 1 6.1457 0.8038 0.6596 9 7 6.2887 -1.2838 0.4726 10 6 6.2891 0.2645 -1.4003 11 1 5.6686 0.0152 -2.2484 12 6 7.5388 0.8123 -1.5977 13 7 8.3489 0.9871 -0.5766 14 14 8.0815 1.3060 -3.3156 15 1 8.7547 0.1564 -3.9716 16 1 6.8948 1.7059 -4.1137 17 1 9.0263 2.4482 -3.2271 18 6 3.6032 -1.1990 -0.0010 19 6 2.2067 -1.2081 -0.0005 20 6 1.4956 -2.4511 -0.0005 21 7 0.9315 -3.4371 -0.0015 22 1 -0.3633 -0.0004 1.0278 23 1 -0.3632 0.8903 -0.5134 24 1 -0.3633 -0.8897 -0.5142 25 1 1.6586 2.1292 0.0008 26 1 4.5104 2.8238 -1.0155 27 1 3.7384 3.2586 0.5283 28 1 5.2834 2.3747 0.5236 29 1 6.0661 -2.0181 -0.1827 30 1 7.2813 -1.2461 0.6498 31 1 8.0433 0.7941 0.3236 32 1 4.1506 -2.1300 -0.0011 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260112794.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:22 Heat of formation + Delta-G solvation = 17.080787 kcal Electronic energy + Delta-G solvation = -15420.970349 eV Core-core repulsion = 12958.880256 eV Total energy + Delta-G solvation = -2462.090093 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.88673 -37.92190 -36.81454 -34.27602 -33.63554 -32.16025 -28.62442 -28.43134 -26.92464 -24.33868 -22.91591 -21.82529 -19.47687 -18.54116 -17.27795 -16.48374 -15.78027 -15.69164 -15.37399 -15.11346 -14.70218 -14.58145 -14.17659 -13.93615 -13.91898 -13.79354 -13.72455 -13.18217 -12.79620 -12.76110 -12.53302 -12.29150 -11.97132 -11.93791 -11.40916 -11.32404 -10.70679 -9.64385 -9.49852 -9.15866 -8.50599 -6.35951 -0.12636 0.52987 1.54657 1.58672 1.59831 1.78273 1.95620 2.54326 2.91057 2.94721 3.17590 3.86862 3.91340 3.99262 4.18757 4.41081 4.55652 4.68528 4.77173 4.79867 4.87401 4.90505 4.97094 5.12926 5.33733 5.35552 5.40698 5.50311 5.83703 5.95697 6.04059 6.13414 6.42132 6.58852 6.60072 6.82643 7.41716 8.76496 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030335 B = 0.007654 C = 0.007034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.811566 B = 3657.156149 C = 3979.845912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.045 4.045 3 C -0.118 4.118 4 C -0.055 4.055 5 C -0.107 4.107 6 C -0.066 4.066 7 C 0.227 3.773 8 H 0.036 0.964 9 N -0.847 5.847 10 C -0.617 4.617 11 H 0.037 0.963 12 C -0.011 4.011 13 N -0.928 5.928 14 Si 1.105 2.895 15 H -0.282 1.282 16 H -0.274 1.274 17 H -0.284 1.284 18 C -0.064 4.064 19 C -0.062 4.062 20 C 0.287 3.713 21 N -0.465 5.465 22 H 0.087 0.913 23 H 0.098 0.902 24 H 0.054 0.946 25 H 0.164 0.836 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.046 0.954 29 H 0.327 0.673 30 H 0.327 0.673 31 H 0.262 0.738 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.420 3.604 0.422 11.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.048 4.048 3 C -0.135 4.135 4 C -0.056 4.056 5 C -0.163 4.163 6 C -0.067 4.067 7 C 0.117 3.883 8 H 0.054 0.946 9 N -0.374 5.374 10 C -0.657 4.657 11 H 0.055 0.945 12 C -0.212 4.212 13 N -0.566 5.566 14 Si 0.929 3.071 15 H -0.208 1.208 16 H -0.199 1.199 17 H -0.210 1.210 18 C -0.084 4.084 19 C -0.066 4.066 20 C -0.027 4.027 21 N -0.142 5.142 22 H 0.106 0.894 23 H 0.117 0.883 24 H 0.073 0.927 25 H 0.181 0.819 26 H 0.088 0.912 27 H 0.110 0.890 28 H 0.065 0.935 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.073 0.927 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.536 2.775 0.205 11.867 hybrid contribution 0.159 -0.568 0.042 0.592 sum -11.377 2.207 0.247 11.592 Atomic orbital electron populations 1.20893 0.88598 1.03759 1.03710 1.20057 0.97199 0.90699 0.96852 1.21035 0.92196 0.98405 1.01904 1.20200 0.94424 0.95195 0.95823 1.20755 0.99398 0.93621 1.02525 1.19960 0.96332 0.92622 0.97800 1.18033 0.87890 0.88849 0.93496 0.94650 1.59551 1.19504 1.07403 1.50910 1.22629 1.04054 1.45942 0.93067 0.94450 1.26902 0.93488 0.93256 1.07561 1.70930 1.36812 1.48636 1.00184 0.83050 0.75909 0.76875 0.71244 1.20808 1.19940 1.20951 1.20902 0.91602 0.98680 0.97254 1.15937 0.91729 0.86829 1.12055 1.25767 0.92208 0.92535 0.92195 1.81177 1.10323 1.11434 1.11219 0.89415 0.88306 0.92688 0.81871 0.91247 0.89017 0.93512 0.86240 0.86260 0.92703 0.85960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.13 9.61 71.24 0.68 -1.45 16 2 C -0.05 -1.19 5.91 -19.60 -0.12 -1.31 16 3 C -0.12 -3.07 9.34 22.23 0.21 -2.86 16 4 C -0.06 -1.86 5.88 -19.80 -0.12 -1.97 16 5 C -0.11 -3.43 9.40 71.23 0.67 -2.76 16 6 C -0.07 -2.62 5.06 -19.91 -0.10 -2.72 16 7 C 0.23 10.33 2.01 43.42 0.09 10.42 16 8 H 0.04 1.78 5.28 -2.39 -0.01 1.77 16 9 N -0.85 -36.52 8.51 -174.97 -1.49 -38.01 16 10 C -0.62 -31.07 8.29 25.60 0.21 -30.86 16 11 H 0.04 1.95 7.81 -2.91 -0.02 1.93 16 12 C -0.01 -0.57 5.45 84.65 0.46 -0.10 16 13 N -0.93 -51.13 13.63 21.44 0.29 -50.83 16 14 Si 1.11 47.01 29.91 68.60 2.05 49.06 16 15 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 16 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 17 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 18 C -0.06 -2.31 8.98 22.54 0.20 -2.11 16 19 C -0.06 -1.95 5.73 -21.36 -0.12 -2.07 16 20 C 0.29 9.17 13.80 88.33 1.22 10.39 16 21 N -0.47 -15.93 18.54 19.00 0.35 -15.58 16 22 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 23 H 0.10 1.37 8.09 -2.39 -0.02 1.35 16 24 H 0.05 1.13 7.09 -2.39 -0.02 1.12 16 25 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 26 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.09 2.20 8.08 -2.39 -0.02 2.18 16 28 H 0.05 1.77 6.10 -2.39 -0.01 1.76 16 29 H 0.33 13.58 7.63 -89.69 -0.68 12.90 16 30 H 0.33 14.72 8.44 -89.69 -0.76 13.97 16 31 H 0.26 14.46 6.22 -92.71 -0.58 13.88 16 32 H 0.12 4.52 6.42 -2.91 -0.02 4.50 16 Total: -1.00 -57.72 276.86 4.41 -53.31 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: -0.08 Total: 29.45 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: 3.29 Total: -27.40 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -0.84 Total: -104.42 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.05 Total: 49.06 kcal Total: -57.72 4.41 -53.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260112794.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.393 kcal (2) G-P(sol) polarization free energy of solvation -57.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds