Wall clock time and date at job start Mon Mar 30 2020 03:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30242 * 126.10447 * 2 1 4 4 N 1.39869 * 110.08470 * 180.25846 * 3 2 1 5 5 H 0.97004 * 125.46630 * 179.97438 * 4 3 2 6 6 C 1.37039 * 109.07799 * 0.02562 * 4 3 2 7 7 C 1.39288 * 133.85150 * 179.97438 * 6 4 3 8 8 C 1.36591 * 119.85280 * 180.02562 * 7 6 4 9 9 C 1.38963 * 120.81431 * 0.04143 * 8 7 6 10 10 C 1.36469 * 120.62781 * 359.97438 * 9 8 7 11 11 C 1.50708 * 120.17878 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47074 * 264.98059 * 11 10 9 13 13 C 1.50699 * 109.47079 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00242 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00288 * 179.97438 * 13 12 11 16 16 N 1.31524 * 119.99666 * 0.02562 * 15 13 12 17 17 Si 1.86790 * 120.00431 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46958 * 90.00243 * 17 15 13 19 19 H 1.48498 * 109.47522 * 210.00239 * 17 15 13 20 20 H 1.48506 * 109.47058 * 330.00808 * 17 15 13 21 21 C 1.39938 * 119.63664 * 0.02562 * 10 9 8 22 22 H 1.08995 * 109.47330 * 269.69486 * 1 2 3 23 23 H 1.09002 * 109.47103 * 29.69489 * 1 2 3 24 24 H 1.08999 * 109.46794 * 149.69451 * 1 2 3 25 25 H 1.08001 * 120.07199 * 0.05130 * 7 6 4 26 26 H 1.08002 * 119.59485 * 180.02562 * 8 7 6 27 27 H 1.08004 * 119.68722 * 180.02562 * 9 8 7 28 28 H 1.09002 * 109.47221 * 24.98233 * 11 10 9 29 29 H 1.08995 * 109.46680 * 144.97864 * 11 10 9 30 30 H 1.08998 * 109.46791 * 299.99973 * 12 11 10 31 31 H 1.08996 * 109.47332 * 59.99809 * 12 11 10 32 32 H 0.96996 * 119.99888 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2745 1.0523 0.0000 4 7 3.6189 0.6663 -0.0059 5 1 4.3779 1.2703 -0.0074 6 6 3.6920 -0.7021 -0.0104 7 6 4.7465 -1.6121 -0.0174 8 6 4.4873 -2.9532 -0.0210 9 6 3.1804 -3.4256 -0.0187 10 6 2.1274 -2.5576 -0.0122 11 6 0.7141 -3.0810 -0.0091 12 6 0.1871 -3.1350 -1.4445 13 6 -1.2262 -3.6578 -1.4413 14 1 -1.7013 -3.9245 -0.5089 15 6 -1.9133 -3.7947 -2.6289 16 7 -1.3350 -3.4695 -3.7644 17 14 -3.6650 -4.4434 -2.6251 18 1 -4.6130 -3.3078 -2.4949 19 1 -3.9284 -5.1650 -3.8960 20 1 -3.8461 -5.3730 -1.4812 21 6 2.3670 -1.1789 -0.0084 22 1 -0.3634 -0.0055 1.0276 23 1 -0.3633 0.8927 -0.5091 24 1 -0.3633 -0.8872 -0.5186 25 1 5.7669 -1.2581 -0.0195 26 1 5.3081 -3.6551 -0.0260 27 1 2.9963 -4.4899 -0.0212 28 1 0.6984 -4.0822 0.4216 29 1 0.0832 -2.4200 0.5850 30 1 0.2029 -2.1338 -1.8751 31 1 0.8181 -3.7960 -2.0386 32 1 -1.8181 -3.5661 -4.5999 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260116217.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:22 Heat of formation + Delta-G solvation = 61.938583 kcal Electronic energy + Delta-G solvation = -15427.012203 eV Core-core repulsion = 12966.867291 eV Total energy + Delta-G solvation = -2460.144913 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.96981 -37.13784 -34.52462 -32.74029 -31.27388 -29.37278 -29.00327 -27.19084 -25.00138 -22.33344 -21.88739 -20.61348 -19.33206 -17.02897 -16.51841 -16.12497 -14.98056 -14.72923 -14.43702 -14.33809 -13.35247 -12.93384 -12.69405 -12.47715 -12.29267 -11.82282 -11.61727 -11.41256 -11.20709 -10.91496 -10.73760 -10.52283 -10.26449 -9.83730 -9.77403 -9.26029 -9.07548 -8.35787 -8.25398 -7.49585 -5.99821 -4.03410 1.30518 1.88748 2.79671 2.98676 3.32277 3.39153 3.41874 4.15091 4.46200 4.86179 4.92623 5.06331 5.30935 5.35871 5.56366 5.71345 5.87388 5.98419 6.07766 6.14659 6.26926 6.34024 6.53551 6.63562 6.74795 6.85765 6.95575 7.10968 7.29438 7.58631 7.69823 7.79959 7.93694 8.00744 8.39082 9.03907 9.61046 11.10879 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.032891 B = 0.007085 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.091467 B = 3950.872559 C = 4452.291466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.123 3.877 3 N -0.272 5.272 4 N -0.520 5.520 5 H 0.434 0.566 6 C 0.130 3.870 7 C -0.169 4.169 8 C -0.061 4.061 9 C -0.174 4.174 10 C 0.026 3.974 11 C -0.089 4.089 12 C 0.031 3.969 13 C -0.523 4.523 14 H 0.057 0.943 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.890 3.110 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.174 4.174 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.112 0.888 25 H 0.117 0.883 26 H 0.123 0.877 27 H 0.125 0.875 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.021 0.979 31 H 0.018 0.982 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.311 3.984 7.856 12.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.055 4.055 3 N -0.087 5.087 4 N -0.234 5.234 5 H 0.277 0.723 6 C 0.014 3.986 7 C -0.192 4.192 8 C -0.081 4.081 9 C -0.193 4.193 10 C 0.024 3.976 11 C -0.126 4.126 12 C -0.006 4.006 13 C -0.561 4.561 14 H 0.075 0.925 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.718 3.282 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.182 4.182 22 H 0.097 0.903 23 H 0.092 0.908 24 H 0.130 0.870 25 H 0.135 0.865 26 H 0.141 0.859 27 H 0.143 0.857 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.036 0.964 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.313 5.287 7.667 13.170 hybrid contribution -0.296 -0.812 -0.233 0.895 sum 9.016 4.475 7.433 12.513 Atomic orbital electron populations 1.20633 0.85406 1.05703 1.03357 1.23631 0.96894 0.88512 0.96442 1.76476 0.87190 1.23394 1.21618 1.45757 1.05643 1.03359 1.68684 0.72273 1.18836 0.95780 0.84842 0.99120 1.19621 0.96204 0.92134 1.11206 1.20654 0.96940 0.94274 0.96255 1.20585 0.91736 0.99855 1.07175 1.19662 0.97465 0.90141 0.90335 1.21008 0.89503 0.99962 1.02146 1.19093 0.95436 0.97619 0.88478 1.21232 0.98466 1.43531 0.92849 0.92475 1.25013 0.98070 0.95539 0.95654 1.69976 1.37158 1.48296 0.97724 0.86620 0.85054 0.79076 0.77414 1.20632 1.21309 1.19851 1.19664 0.91334 0.94014 1.13181 0.90341 0.90799 0.86979 0.86452 0.85885 0.85713 0.91807 0.91470 0.96038 0.96364 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.54 9.33 36.01 0.34 -1.20 16 2 C 0.12 2.25 7.43 -80.19 -0.60 1.65 16 3 N -0.27 -4.79 12.55 34.84 0.44 -4.35 16 4 N -0.52 -8.00 7.37 32.36 0.24 -7.76 16 5 H 0.43 4.99 8.96 -182.77 -1.64 3.35 16 6 C 0.13 2.16 7.34 -84.17 -0.62 1.54 16 7 C -0.17 -2.41 10.03 -39.79 -0.40 -2.80 16 8 C -0.06 -0.85 9.96 -39.91 -0.40 -1.25 16 9 C -0.17 -2.87 9.60 -39.95 -0.38 -3.25 16 10 C 0.03 0.50 5.13 -104.62 -0.54 -0.04 16 11 C -0.09 -1.79 4.63 -27.88 -0.13 -1.92 16 12 C 0.03 0.77 4.35 -27.89 -0.12 0.64 16 13 C -0.52 -14.14 9.11 -34.44 -0.31 -14.45 16 14 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 17 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 C -0.17 -3.27 6.14 -105.21 -0.65 -3.91 16 22 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 23 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 24 H 0.11 2.13 4.51 -51.93 -0.23 1.89 16 25 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 26 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 27 H 0.12 1.89 8.05 -52.48 -0.42 1.46 16 28 H 0.06 1.23 8.05 -51.93 -0.42 0.81 16 29 H 0.07 1.29 6.23 -51.93 -0.32 0.96 16 30 H 0.02 0.57 6.90 -51.93 -0.36 0.21 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 LS Contribution 271.86 15.07 4.10 4.10 Total: -1.00 -31.07 271.86 -8.46 -39.54 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -5.05 Total: 1.47 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -3.90 Total: -23.46 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 1.41 Total: -37.74 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.07 -8.46 -39.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260116217.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.475 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds