Wall clock time and date at job start Mon Mar 30 2020 03:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30242 * 126.10447 * 2 1 4 4 N 1.39869 * 110.08470 * 180.25846 * 3 2 1 5 5 H 0.97004 * 125.46630 * 179.97438 * 4 3 2 6 6 C 1.37039 * 109.07799 * 0.02562 * 4 3 2 7 7 C 1.39288 * 133.85150 * 179.97438 * 6 4 3 8 8 C 1.36591 * 119.85280 * 180.02562 * 7 6 4 9 9 C 1.38963 * 120.81431 * 0.04143 * 8 7 6 10 10 C 1.36469 * 120.62781 * 359.97438 * 9 8 7 11 11 C 1.50708 * 120.17878 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47074 * 264.98059 * 11 10 9 13 13 C 1.50699 * 109.47079 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00242 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00288 * 179.97438 * 13 12 11 16 16 N 1.31524 * 119.99666 * 0.02562 * 15 13 12 17 17 Si 1.86790 * 120.00431 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46958 * 90.00243 * 17 15 13 19 19 H 1.48498 * 109.47522 * 210.00239 * 17 15 13 20 20 H 1.48506 * 109.47058 * 330.00808 * 17 15 13 21 21 C 1.39938 * 119.63664 * 0.02562 * 10 9 8 22 22 H 1.08995 * 109.47330 * 269.69486 * 1 2 3 23 23 H 1.09002 * 109.47103 * 29.69489 * 1 2 3 24 24 H 1.08999 * 109.46794 * 149.69451 * 1 2 3 25 25 H 1.08001 * 120.07199 * 0.05130 * 7 6 4 26 26 H 1.08002 * 119.59485 * 180.02562 * 8 7 6 27 27 H 1.08004 * 119.68722 * 180.02562 * 9 8 7 28 28 H 1.09002 * 109.47221 * 24.98233 * 11 10 9 29 29 H 1.08995 * 109.46680 * 144.97864 * 11 10 9 30 30 H 1.08998 * 109.46791 * 299.99973 * 12 11 10 31 31 H 1.08996 * 109.47332 * 59.99809 * 12 11 10 32 32 H 0.96996 * 119.99888 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2745 1.0523 0.0000 4 7 3.6189 0.6663 -0.0059 5 1 4.3779 1.2703 -0.0074 6 6 3.6920 -0.7021 -0.0104 7 6 4.7465 -1.6121 -0.0174 8 6 4.4873 -2.9532 -0.0210 9 6 3.1804 -3.4256 -0.0187 10 6 2.1274 -2.5576 -0.0122 11 6 0.7141 -3.0810 -0.0091 12 6 0.1871 -3.1350 -1.4445 13 6 -1.2262 -3.6578 -1.4413 14 1 -1.7013 -3.9245 -0.5089 15 6 -1.9133 -3.7947 -2.6289 16 7 -1.3350 -3.4695 -3.7644 17 14 -3.6650 -4.4434 -2.6251 18 1 -4.6130 -3.3078 -2.4949 19 1 -3.9284 -5.1650 -3.8960 20 1 -3.8461 -5.3730 -1.4812 21 6 2.3670 -1.1789 -0.0084 22 1 -0.3634 -0.0055 1.0276 23 1 -0.3633 0.8927 -0.5091 24 1 -0.3633 -0.8872 -0.5186 25 1 5.7669 -1.2581 -0.0195 26 1 5.3081 -3.6551 -0.0260 27 1 2.9963 -4.4899 -0.0212 28 1 0.6984 -4.0822 0.4216 29 1 0.0832 -2.4200 0.5850 30 1 0.2029 -2.1338 -1.8751 31 1 0.8181 -3.7960 -2.0386 32 1 -1.8181 -3.5661 -4.5999 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260116217.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:21 Heat of formation + Delta-G solvation = 43.351173 kcal Electronic energy + Delta-G solvation = -15427.818214 eV Core-core repulsion = 12966.867291 eV Total energy + Delta-G solvation = -2460.950923 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.24425 -38.43742 -36.14578 -34.52447 -32.81713 -30.65445 -30.55593 -28.59439 -26.78551 -23.90421 -23.18793 -22.21955 -20.67194 -18.60428 -18.07838 -17.63102 -16.49032 -16.29558 -15.97792 -15.60733 -14.83576 -14.55617 -14.20723 -13.89662 -13.78667 -13.31557 -13.19122 -12.86039 -12.80307 -12.63263 -12.37021 -12.00480 -11.78378 -11.57914 -11.47779 -11.05754 -10.71271 -10.49521 -9.54733 -8.76605 -8.13468 -6.24822 0.03673 0.61757 1.45063 1.45645 1.48335 1.56706 1.81646 2.45713 2.88768 3.19954 3.58346 3.65803 3.83891 4.13251 4.38115 4.48853 4.51231 4.72000 4.78618 4.80203 4.90950 4.93427 5.04085 5.17713 5.30534 5.46088 5.54954 5.61177 5.64463 5.92022 5.92991 6.02801 6.28972 6.46023 6.66903 6.92401 7.44544 8.97692 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.032891 B = 0.007085 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.091467 B = 3950.872559 C = 4452.291466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.101 3.899 3 N -0.282 5.282 4 N -0.508 5.508 5 H 0.450 0.550 6 C 0.119 3.881 7 C -0.157 4.157 8 C -0.057 4.057 9 C -0.178 4.178 10 C -0.006 4.006 11 C -0.074 4.074 12 C 0.043 3.957 13 C -0.536 4.536 14 H 0.065 0.935 15 C 0.002 3.998 16 N -0.934 5.934 17 Si 0.961 3.039 18 H -0.272 1.272 19 H -0.287 1.287 20 H -0.261 1.261 21 C -0.204 4.204 22 H 0.099 0.901 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.158 0.842 26 H 0.165 0.835 27 H 0.133 0.867 28 H 0.069 0.931 29 H 0.071 0.929 30 H -0.005 1.005 31 H -0.014 1.014 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.424 3.695 8.929 14.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.076 4.076 3 N -0.098 5.098 4 N -0.224 5.224 5 H 0.297 0.703 6 C 0.003 3.997 7 C -0.179 4.179 8 C -0.077 4.077 9 C -0.197 4.197 10 C -0.009 4.009 11 C -0.111 4.111 12 C 0.006 3.994 13 C -0.574 4.574 14 H 0.084 0.916 15 C -0.196 4.196 16 N -0.574 5.574 17 Si 0.786 3.214 18 H -0.198 1.198 19 H -0.213 1.213 20 H -0.185 1.185 21 C -0.212 4.212 22 H 0.117 0.883 23 H 0.100 0.900 24 H 0.102 0.898 25 H 0.176 0.824 26 H 0.182 0.818 27 H 0.151 0.849 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.013 0.987 31 H 0.004 0.996 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.438 5.011 8.760 14.519 hybrid contribution -0.512 -0.702 -0.563 1.035 sum 9.926 4.310 8.197 13.575 Atomic orbital electron populations 1.20553 0.85082 1.04572 1.04358 1.23836 0.97523 0.88866 0.97373 1.76383 0.88264 1.23465 1.21717 1.45743 1.05440 1.03463 1.67791 0.70260 1.19171 0.95748 0.85430 0.99373 1.20134 0.97408 0.91712 1.08609 1.21094 0.96876 0.95134 0.94633 1.20883 0.92559 1.00126 1.06152 1.19580 0.96979 0.90816 0.93479 1.20717 0.91083 1.00529 0.98778 1.18863 0.94438 0.94964 0.91112 1.21674 0.99518 1.42950 0.93220 0.91638 1.25928 1.02596 0.95796 0.95243 1.70122 1.39089 1.49785 0.98426 0.85507 0.79600 0.78689 0.77626 1.19797 1.21251 1.18535 1.19922 0.92729 0.94180 1.14355 0.88254 0.90031 0.89824 0.82443 0.81750 0.84869 0.91264 0.91039 0.98710 0.99587 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.98 9.33 71.24 0.66 -2.31 16 2 C 0.10 3.74 7.43 44.79 0.33 4.08 16 3 N -0.28 -9.84 12.55 -43.69 -0.55 -10.39 16 4 N -0.51 -14.80 7.37 -51.53 -0.38 -15.18 16 5 H 0.45 9.36 8.96 -213.46 -1.91 7.44 16 6 C 0.12 3.74 7.34 39.21 0.29 4.03 16 7 C -0.16 -3.90 10.03 22.14 0.22 -3.68 16 8 C -0.06 -1.42 9.96 22.06 0.22 -1.20 16 9 C -0.18 -5.63 9.60 22.03 0.21 -5.42 16 10 C -0.01 -0.23 5.13 -19.86 -0.10 -0.33 16 11 C -0.07 -3.05 4.63 29.85 0.14 -2.91 16 12 C 0.04 2.25 4.35 29.85 0.13 2.38 16 13 C -0.54 -29.59 9.11 25.60 0.23 -29.36 16 14 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 15 C 0.00 0.11 5.46 84.65 0.46 0.58 16 16 N -0.93 -56.71 13.29 21.45 0.28 -56.42 16 17 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 21 C -0.20 -7.65 6.14 -20.25 -0.12 -7.77 16 22 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 23 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 24 H 0.08 3.35 4.51 -2.39 -0.01 3.34 16 25 H 0.16 2.64 8.06 -2.91 -0.02 2.61 16 26 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 27 H 0.13 3.87 8.05 -2.91 -0.02 3.85 16 28 H 0.07 2.70 8.05 -2.39 -0.02 2.68 16 29 H 0.07 2.82 6.23 -2.39 -0.01 2.81 16 30 H -0.01 -0.31 6.90 -2.39 -0.02 -0.32 16 31 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 32 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -68.30 271.86 3.28 -65.02 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -0.78 Total: 13.26 kcal Atomic # 6 Polarization: -44.59 SS G_CDS: 2.68 Total: -41.91 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -0.64 Total: -81.99 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -68.30 3.28 -65.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260116217.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.369 kcal (2) G-P(sol) polarization free energy of solvation -68.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds