Wall clock time and date at job start Mon Mar 30 2020 03:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30112 * 124.94602 * 2 1 4 4 C 1.35786 * 109.64336 * 180.02562 * 3 2 1 5 5 C 1.40541 * 106.92936 * 0.02562 * 4 3 2 6 6 C 1.38791 * 119.83800 * 180.02562 * 5 4 3 7 7 C 1.37896 * 119.68692 * 359.97438 * 6 5 4 8 8 C 1.38733 * 120.44943 * 359.74966 * 7 6 5 9 9 C 1.36634 * 120.67278 * 0.51383 * 8 7 6 10 10 C 1.50703 * 120.05991 * 179.76648 * 9 8 7 11 11 N 1.36037 * 124.94791 * 180.02562 * 2 1 3 12 12 C 1.46501 * 126.34491 * 359.97438 * 11 2 1 13 13 C 1.50694 * 109.47856 * 269.98357 * 12 11 2 14 14 H 1.08003 * 119.99589 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00659 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99648 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00330 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46914 * 89.99812 * 17 15 13 19 19 H 1.48500 * 109.47136 * 209.99792 * 17 15 13 20 20 H 1.48502 * 109.47106 * 329.99883 * 17 15 13 21 21 H 1.09006 * 109.47235 * 269.97762 * 1 2 3 22 22 H 1.09006 * 109.47339 * 29.97156 * 1 2 3 23 23 H 1.08996 * 109.47495 * 149.97238 * 1 2 3 24 24 H 1.07998 * 120.15567 * 179.97438 * 6 5 4 25 25 H 1.07999 * 119.77298 * 180.02562 * 7 6 5 26 26 H 1.08011 * 119.66177 * 180.27375 * 8 7 6 27 27 H 1.09002 * 109.47152 * 269.72014 * 10 9 8 28 28 H 1.09001 * 109.46980 * 149.72115 * 10 9 8 29 29 H 1.09004 * 109.47113 * 29.72096 * 10 9 8 30 30 H 1.09006 * 109.47153 * 29.98352 * 12 11 2 31 31 H 1.09002 * 109.46981 * 149.97694 * 12 11 2 32 32 H 0.96991 * 119.99613 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0665 0.0000 4 6 3.5620 0.7082 -0.0006 5 6 3.6019 -0.6967 -0.0015 6 6 4.8249 -1.3528 -0.0018 7 6 5.9930 -0.6200 -0.0016 8 6 5.9530 0.7668 -0.0064 9 6 4.7583 1.4296 -0.0008 10 6 4.7310 2.9364 -0.0008 11 7 2.2862 -1.1151 -0.0005 12 6 1.8164 -2.5027 -0.0006 13 6 1.6561 -2.9790 1.4201 14 1 1.8821 -2.3147 2.2411 15 6 1.2220 -4.2632 1.6719 16 7 0.9473 -5.0723 0.6721 17 14 1.0241 -4.8538 3.4329 18 1 -0.3546 -4.5616 3.9010 19 1 1.2681 -6.3173 3.4946 20 1 2.0014 -4.1519 4.3032 21 1 -0.3634 -0.0004 1.0277 22 1 -0.3634 0.8903 -0.5134 23 1 -0.3634 -0.8897 -0.5142 24 1 4.8616 -2.4321 -0.0021 25 1 6.9455 -1.1291 -0.0021 26 1 6.8758 1.3281 -0.0106 27 1 4.7242 3.2997 1.0268 28 1 3.8346 3.2836 -0.5148 29 1 5.6144 3.3158 -0.5145 30 1 0.8565 -2.5612 -0.5139 31 1 2.5424 -3.1321 -0.5152 32 1 0.6415 -5.9756 0.8493 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260125624.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:31 Heat of formation + Delta-G solvation = 51.121602 kcal Electronic energy + Delta-G solvation = -15533.039979 eV Core-core repulsion = 13072.426007 eV Total energy + Delta-G solvation = -2460.613972 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.41459 -37.13798 -34.14720 -32.70416 -31.34101 -30.72186 -27.46412 -27.04714 -25.87061 -23.35465 -21.50692 -20.79767 -18.73420 -16.84793 -16.68019 -15.96597 -14.82596 -14.79466 -14.57035 -13.54636 -13.17480 -13.12634 -12.65612 -12.62499 -12.24154 -12.11971 -11.84394 -11.62022 -11.35671 -11.16030 -10.94031 -10.82503 -10.70872 -10.31078 -10.10778 -9.26866 -9.20025 -8.73456 -7.59178 -7.29168 -6.35857 -4.45031 1.54554 2.16285 3.14578 3.21582 3.25665 3.47101 3.66718 4.21582 4.42002 4.77025 4.98107 5.18150 5.37124 5.55299 5.70978 5.76825 5.93591 5.97987 5.99211 6.05249 6.13820 6.22369 6.27448 6.38543 6.56003 6.87574 6.91459 7.03094 7.19432 7.39349 7.53159 7.57609 7.77252 8.02076 8.60026 8.65397 9.23211 10.71410 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030030 B = 0.007920 C = 0.006989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.161935 B = 3534.322891 C = 4005.533919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.281 3.719 3 N -0.518 5.518 4 C 0.042 3.958 5 C 0.054 3.946 6 C -0.098 4.098 7 C -0.120 4.120 8 C -0.141 4.141 9 C -0.046 4.046 10 C -0.102 4.102 11 N -0.457 5.457 12 C 0.237 3.763 13 C -0.542 4.542 14 H 0.064 0.936 15 C 0.068 3.932 16 N -0.889 5.889 17 Si 0.905 3.095 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.272 1.272 21 H 0.084 0.916 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.118 0.882 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.351 8.081 -1.810 9.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.016 3.984 3 N -0.240 5.240 4 C -0.078 4.078 5 C -0.058 4.058 6 C -0.119 4.119 7 C -0.140 4.140 8 C -0.162 4.162 9 C -0.048 4.048 10 C -0.159 4.159 11 N -0.141 5.141 12 C 0.119 3.881 13 C -0.580 4.580 14 H 0.082 0.918 15 C -0.136 4.136 16 N -0.527 5.527 17 Si 0.732 3.268 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.196 1.196 21 H 0.103 0.897 22 H 0.101 0.899 23 H 0.099 0.901 24 H 0.139 0.861 25 H 0.139 0.861 26 H 0.136 0.864 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.908 8.529 -1.867 9.566 hybrid contribution 0.155 -1.535 0.989 1.833 sum 4.064 6.994 -0.878 8.136 Atomic orbital electron populations 1.20255 0.85074 1.03537 1.03927 1.23461 0.95705 0.81316 0.97959 1.70302 1.00567 1.27749 1.25404 1.18873 0.91875 0.90413 1.06683 1.18912 0.86291 0.94643 1.05965 1.20036 0.89313 0.99686 1.02831 1.20679 0.96852 0.93725 1.02793 1.20329 0.96399 0.94196 1.05250 1.18668 0.90001 0.95294 1.00798 1.20615 1.02089 0.91429 1.01731 1.45996 1.03705 1.09565 1.54884 1.19722 0.96566 0.72809 0.99039 1.21296 1.47005 0.98490 0.91245 0.91789 1.24933 0.94439 0.96062 0.98165 1.69917 1.44114 1.07547 1.31105 0.86369 0.78837 0.77984 0.83651 1.20175 1.20777 1.19626 0.89719 0.89888 0.90065 0.86078 0.86138 0.86395 0.91832 0.91359 0.92313 0.93069 0.93560 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.16 10.17 36.00 0.37 -0.79 16 2 C 0.28 5.93 7.85 -154.82 -1.22 4.72 16 3 N -0.52 -11.16 11.27 -8.23 -0.09 -11.25 16 4 C 0.04 0.90 6.90 -84.70 -0.58 0.31 16 5 C 0.05 1.20 6.87 -83.99 -0.58 0.63 16 6 C -0.10 -1.94 10.05 -39.50 -0.40 -2.34 16 7 C -0.12 -1.98 10.03 -39.52 -0.40 -2.38 16 8 C -0.14 -2.24 9.60 -39.98 -0.38 -2.63 16 9 C -0.05 -0.82 5.88 -104.65 -0.61 -1.44 16 10 C -0.10 -1.47 10.02 36.01 0.36 -1.11 16 11 N -0.46 -10.46 2.79 -112.44 -0.31 -10.78 16 12 C 0.24 5.82 5.68 -5.20 -0.03 5.79 16 13 C -0.54 -14.43 9.39 -34.44 -0.32 -14.75 16 14 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 15 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 16 N -0.89 -24.31 13.29 55.43 0.74 -23.58 16 17 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 22 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 23 H 0.08 1.33 7.01 -51.93 -0.36 0.96 16 24 H 0.12 2.36 8.06 -52.49 -0.42 1.93 16 25 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 26 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 29 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 30 H 0.05 1.26 6.99 -51.93 -0.36 0.89 16 31 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 279.16 15.07 4.21 4.21 Total: -1.00 -29.44 279.16 -8.45 -37.88 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -4.07 Total: 0.23 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -3.89 Total: -12.28 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.33 Total: -45.61 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.44 -8.45 -37.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260125624.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.006 kcal (2) G-P(sol) polarization free energy of solvation -29.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds