Wall clock time and date at job start Mon Mar 30 2020 03:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30112 * 124.94602 * 2 1 4 4 C 1.35786 * 109.64336 * 180.02562 * 3 2 1 5 5 C 1.40541 * 106.92936 * 0.02562 * 4 3 2 6 6 C 1.38791 * 119.83800 * 180.02562 * 5 4 3 7 7 C 1.37896 * 119.68692 * 359.97438 * 6 5 4 8 8 C 1.38733 * 120.44943 * 359.74966 * 7 6 5 9 9 C 1.36634 * 120.67278 * 0.51383 * 8 7 6 10 10 C 1.50703 * 120.05991 * 179.76648 * 9 8 7 11 11 N 1.36037 * 124.94791 * 180.02562 * 2 1 3 12 12 C 1.46501 * 126.34491 * 359.97438 * 11 2 1 13 13 C 1.50694 * 109.47856 * 269.98357 * 12 11 2 14 14 H 1.08003 * 119.99589 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00659 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99648 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00330 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46914 * 89.99812 * 17 15 13 19 19 H 1.48500 * 109.47136 * 209.99792 * 17 15 13 20 20 H 1.48502 * 109.47106 * 329.99883 * 17 15 13 21 21 H 1.09006 * 109.47235 * 269.97762 * 1 2 3 22 22 H 1.09006 * 109.47339 * 29.97156 * 1 2 3 23 23 H 1.08996 * 109.47495 * 149.97238 * 1 2 3 24 24 H 1.07998 * 120.15567 * 179.97438 * 6 5 4 25 25 H 1.07999 * 119.77298 * 180.02562 * 7 6 5 26 26 H 1.08011 * 119.66177 * 180.27375 * 8 7 6 27 27 H 1.09002 * 109.47152 * 269.72014 * 10 9 8 28 28 H 1.09001 * 109.46980 * 149.72115 * 10 9 8 29 29 H 1.09004 * 109.47113 * 29.72096 * 10 9 8 30 30 H 1.09006 * 109.47153 * 29.98352 * 12 11 2 31 31 H 1.09002 * 109.46981 * 149.97694 * 12 11 2 32 32 H 0.96991 * 119.99613 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0665 0.0000 4 6 3.5620 0.7082 -0.0006 5 6 3.6019 -0.6967 -0.0015 6 6 4.8249 -1.3528 -0.0018 7 6 5.9930 -0.6200 -0.0016 8 6 5.9530 0.7668 -0.0064 9 6 4.7583 1.4296 -0.0008 10 6 4.7310 2.9364 -0.0008 11 7 2.2862 -1.1151 -0.0005 12 6 1.8164 -2.5027 -0.0006 13 6 1.6561 -2.9790 1.4201 14 1 1.8821 -2.3147 2.2411 15 6 1.2220 -4.2632 1.6719 16 7 0.9473 -5.0723 0.6721 17 14 1.0241 -4.8538 3.4329 18 1 -0.3546 -4.5616 3.9010 19 1 1.2681 -6.3173 3.4946 20 1 2.0014 -4.1519 4.3032 21 1 -0.3634 -0.0004 1.0277 22 1 -0.3634 0.8903 -0.5134 23 1 -0.3634 -0.8897 -0.5142 24 1 4.8616 -2.4321 -0.0021 25 1 6.9455 -1.1291 -0.0021 26 1 6.8758 1.3281 -0.0106 27 1 4.7242 3.2997 1.0268 28 1 3.8346 3.2836 -0.5148 29 1 5.6144 3.3158 -0.5145 30 1 0.8565 -2.5612 -0.5139 31 1 2.5424 -3.1321 -0.5152 32 1 0.6415 -5.9756 0.8493 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260125624.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:30 Heat of formation + Delta-G solvation = 35.546966 kcal Electronic energy + Delta-G solvation = -15533.715346 eV Core-core repulsion = 13072.426007 eV Total energy + Delta-G solvation = -2461.289339 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.97321 -38.56176 -35.97812 -34.42773 -32.89751 -32.13681 -29.25113 -28.55451 -27.19121 -25.28641 -23.00424 -22.24039 -20.35646 -18.87386 -18.16214 -17.62044 -16.55993 -16.32717 -16.13775 -15.05873 -14.60787 -14.58995 -14.26506 -14.17254 -13.67833 -13.56061 -13.33167 -13.16290 -13.00517 -12.72726 -12.50783 -12.39132 -12.18533 -12.08657 -11.90504 -10.91207 -10.90955 -10.74011 -9.12389 -8.80232 -8.37512 -6.56776 0.09060 0.71145 1.34539 1.35626 1.46484 1.88025 2.03522 2.31433 2.91826 2.96384 3.32635 3.70763 4.12825 4.14787 4.31272 4.45901 4.51834 4.57693 4.64711 4.74220 4.84537 4.88934 4.92087 4.95628 5.06097 5.28970 5.42946 5.48351 5.62518 5.72469 5.75226 5.84595 6.11772 6.30654 6.58329 7.02949 7.15908 8.67830 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030030 B = 0.007920 C = 0.006989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.161935 B = 3534.322891 C = 4005.533919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.263 3.737 3 N -0.527 5.527 4 C 0.013 3.987 5 C 0.019 3.981 6 C -0.132 4.132 7 C -0.100 4.100 8 C -0.131 4.131 9 C -0.055 4.055 10 C -0.097 4.097 11 N -0.474 5.474 12 C 0.255 3.745 13 C -0.556 4.556 14 H 0.047 0.953 15 C 0.027 3.973 16 N -0.915 5.915 17 Si 0.968 3.032 18 H -0.265 1.265 19 H -0.273 1.273 20 H -0.276 1.276 21 H 0.090 0.910 22 H 0.110 0.890 23 H 0.079 0.921 24 H 0.110 0.890 25 H 0.159 0.841 26 H 0.165 0.835 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.045 0.955 31 H 0.024 0.976 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.797 9.190 -1.140 10.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.002 4.002 3 N -0.249 5.249 4 C -0.106 4.106 5 C -0.092 4.092 6 C -0.153 4.153 7 C -0.120 4.120 8 C -0.151 4.151 9 C -0.057 4.057 10 C -0.153 4.153 11 N -0.161 5.161 12 C 0.136 3.864 13 C -0.594 4.594 14 H 0.065 0.935 15 C -0.175 4.175 16 N -0.553 5.553 17 Si 0.792 3.208 18 H -0.190 1.190 19 H -0.198 1.198 20 H -0.201 1.201 21 H 0.108 0.892 22 H 0.128 0.872 23 H 0.098 0.902 24 H 0.128 0.872 25 H 0.177 0.823 26 H 0.183 0.817 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.111 0.889 30 H 0.063 0.937 31 H 0.042 0.958 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.365 9.664 -1.207 11.119 hybrid contribution -0.162 -1.815 0.740 1.967 sum 5.203 7.849 -0.467 9.429 Atomic orbital electron populations 1.20380 0.82605 1.04768 1.04600 1.24228 0.97266 0.80821 0.97875 1.70285 1.01080 1.27766 1.25773 1.19424 0.92828 0.90469 1.07908 1.19451 0.86623 0.95755 1.07386 1.20241 0.90016 0.99595 1.05453 1.21183 0.97060 0.94337 0.99386 1.20868 0.97446 0.94063 1.02751 1.19245 0.89420 0.97263 0.99788 1.20649 1.03144 0.88946 1.02606 1.45933 1.04638 1.09043 1.56455 1.19278 0.95461 0.73913 0.97782 1.21383 1.47575 0.98801 0.91631 0.93465 1.25696 0.93784 0.95925 1.02064 1.69995 1.44391 1.07973 1.32977 0.85402 0.79008 0.77683 0.78734 1.19018 1.19771 1.20070 0.89184 0.87178 0.90223 0.87220 0.82298 0.81728 0.90906 0.92658 0.88865 0.93668 0.95812 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.21 10.17 71.24 0.72 -1.48 16 2 C 0.26 11.42 7.85 137.92 1.08 12.50 16 3 N -0.53 -22.99 11.27 -179.97 -2.03 -25.02 16 4 C 0.01 0.57 6.90 39.45 0.27 0.84 16 5 C 0.02 0.85 6.87 38.86 0.27 1.12 16 6 C -0.13 -5.29 10.05 22.32 0.22 -5.07 16 7 C -0.10 -3.05 10.03 22.31 0.22 -2.83 16 8 C -0.13 -3.69 9.60 22.01 0.21 -3.47 16 9 C -0.06 -1.87 5.88 -19.88 -0.12 -1.98 16 10 C -0.10 -2.51 10.02 71.24 0.71 -1.80 16 11 N -0.47 -22.69 2.79 -509.64 -1.42 -24.11 16 12 C 0.26 13.18 5.68 85.63 0.49 13.66 16 13 C -0.56 -30.55 9.39 25.60 0.24 -30.31 16 14 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 15 C 0.03 1.44 5.46 84.65 0.46 1.90 16 16 N -0.92 -50.74 13.29 21.45 0.28 -50.45 16 17 Si 0.97 42.32 29.54 68.60 2.03 44.35 16 18 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 19 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 20 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 21 H 0.09 2.91 8.14 -2.38 -0.02 2.89 16 22 H 0.11 3.03 8.14 -2.38 -0.02 3.01 16 23 H 0.08 2.67 7.01 -2.39 -0.02 2.66 16 24 H 0.11 4.49 8.06 -2.91 -0.02 4.46 16 25 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 26 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 27 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.05 1.58 8.09 -2.39 -0.02 1.56 16 29 H 0.09 1.77 8.08 -2.38 -0.02 1.75 16 30 H 0.05 2.34 6.99 -2.38 -0.02 2.32 16 31 H 0.02 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -65.09 279.16 4.76 -60.33 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 1.11 Total: 11.82 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 4.79 Total: -16.91 kcal Atomic # 7 Polarization: -96.42 SS G_CDS: -3.17 Total: -99.59 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -65.09 4.76 -60.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260125624.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.880 kcal (2) G-P(sol) polarization free energy of solvation -65.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds