Wall clock time and date at job start Mon Mar 30 2020 03:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34935 * 119.66691 * 2 1 4 4 C 1.40475 * 120.43114 * 179.97438 * 3 2 1 5 5 C 1.36068 * 119.59169 * 0.02562 * 4 3 2 6 6 C 1.40803 * 119.22169 * 0.02562 * 5 4 3 7 7 C 1.38935 * 132.96588 * 180.02562 * 6 5 4 8 8 C 1.50700 * 126.21478 * 359.93256 * 7 6 5 9 9 H 1.08997 * 109.47326 * 0.02562 * 8 7 6 10 10 C 1.53000 * 109.47492 * 240.00364 * 8 7 6 11 11 C 1.50701 * 109.46926 * 120.00082 * 8 7 6 12 12 H 1.08003 * 119.99918 * 0.02562 * 11 8 7 13 13 C 1.37879 * 120.00212 * 179.97438 * 11 8 7 14 14 N 1.31508 * 119.99795 * 0.02562 * 13 11 8 15 15 Si 1.86797 * 119.99926 * 180.02562 * 13 11 8 16 16 H 1.48502 * 109.47444 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47174 * 120.00249 * 15 13 11 18 18 H 1.48504 * 109.47178 * 240.00143 * 15 13 11 19 19 C 1.38545 * 107.56798 * 179.97438 * 7 6 5 20 20 N 1.31488 * 109.00584 * 359.97438 * 19 7 6 21 21 N 1.36530 * 119.67551 * 179.97438 * 2 1 3 22 22 H 1.08996 * 109.46700 * 89.99892 * 1 2 3 23 23 H 1.09003 * 109.46671 * 209.99679 * 1 2 3 24 24 H 1.08997 * 109.47044 * 329.99633 * 1 2 3 25 25 H 1.07999 * 119.78474 * 359.97438 * 3 2 1 26 26 H 1.07996 * 120.20797 * 179.75170 * 4 3 2 27 27 H 1.07991 * 120.39215 * 179.97438 * 5 4 3 28 28 H 1.08997 * 109.47305 * 180.02562 * 10 8 7 29 29 H 1.08997 * 109.46907 * 300.00345 * 10 8 7 30 30 H 1.09000 * 109.46714 * 60.00290 * 10 8 7 31 31 H 0.97000 * 120.00249 * 179.97438 * 14 13 11 32 32 H 1.07993 * 125.49751 * 179.97438 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1749 1.1725 0.0000 4 6 3.5795 1.1912 0.0005 5 6 4.2672 0.0171 0.0005 6 6 3.5542 -1.1971 -0.0006 7 6 3.9514 -2.5285 -0.0004 8 6 5.3710 -3.0341 -0.0003 9 1 6.0581 -2.1879 0.0001 10 6 5.6096 -3.8847 -1.2495 11 6 5.6058 -3.8717 1.2303 12 1 4.8068 -4.0231 1.9409 13 6 6.8404 -4.4456 1.4484 14 7 7.8131 -4.2616 0.5828 15 14 7.1311 -5.4845 2.9734 16 1 5.8863 -5.5369 3.7814 17 1 7.5164 -6.8603 2.5689 18 1 8.2216 -4.8825 3.7819 19 6 2.8052 -3.3068 -0.0013 20 7 1.7525 -2.5189 -0.0014 21 7 2.1830 -1.1862 0.0005 22 1 -0.3632 0.0000 -1.0276 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 1.6260 2.1026 -0.0004 26 1 4.1104 2.1317 -0.0035 27 1 5.3471 0.0164 0.0005 28 1 6.6363 -4.2507 -1.2491 29 1 4.9226 -4.7308 -1.2495 30 1 5.4399 -3.2787 -2.1395 31 1 8.6818 -4.6651 0.7363 32 1 2.7804 -4.3864 -0.0018 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260173262.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:03 Heat of formation + Delta-G solvation = 90.943072 kcal Electronic energy + Delta-G solvation = -15541.973858 eV Core-core repulsion = 13083.086675 eV Total energy + Delta-G solvation = -2458.887183 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.39847 -37.05245 -34.45139 -33.06751 -30.97223 -30.19943 -27.89191 -26.47243 -25.04906 -22.55619 -22.19203 -21.37376 -18.73852 -16.80985 -16.10103 -15.83387 -15.30165 -15.15356 -14.57140 -13.73468 -13.20758 -13.06474 -12.73801 -12.55754 -12.33110 -11.87213 -11.40763 -11.34383 -11.16160 -10.90643 -10.80907 -10.34819 -10.29157 -9.96998 -9.59942 -9.42326 -8.84472 -8.71052 -8.32080 -6.68559 -5.95164 -4.01700 1.23432 1.64233 2.82612 3.31580 3.39446 3.41934 3.46344 3.94409 4.47515 4.55079 4.98396 5.20786 5.32429 5.36155 5.42726 5.48699 5.61874 5.69450 6.06485 6.13399 6.20947 6.43498 6.62730 6.69744 6.92540 6.96810 7.07942 7.30507 7.47517 7.54047 7.74927 7.96521 8.16001 8.25711 8.49307 9.01110 9.62753 11.09593 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037080 B = 0.007125 C = 0.006841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.943759 B = 3928.854338 C = 4092.047242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.133 3.867 3 C -0.178 4.178 4 C -0.114 4.114 5 C -0.088 4.088 6 C 0.070 3.930 7 C -0.170 4.170 8 C 0.110 3.890 9 H 0.032 0.968 10 C -0.130 4.130 11 C -0.502 4.502 12 H 0.055 0.945 13 C 0.061 3.939 14 N -0.891 5.891 15 Si 0.890 3.110 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.285 1.285 19 C 0.076 3.924 20 N -0.334 5.334 21 N -0.283 5.283 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.142 0.858 26 H 0.131 0.869 27 H 0.144 0.856 28 H 0.084 0.916 29 H 0.026 0.974 30 H 0.006 0.994 31 H 0.259 0.741 32 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.478 9.312 -2.056 13.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.027 3.973 3 C -0.201 4.201 4 C -0.137 4.137 5 C -0.108 4.108 6 C -0.046 4.046 7 C -0.180 4.180 8 C 0.091 3.909 9 H 0.050 0.950 10 C -0.188 4.188 11 C -0.541 4.541 12 H 0.074 0.926 13 C -0.140 4.140 14 N -0.531 5.531 15 Si 0.718 3.282 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.099 4.099 20 N -0.159 5.159 21 N -0.053 5.053 22 H 0.096 0.904 23 H 0.097 0.903 24 H 0.099 0.901 25 H 0.160 0.840 26 H 0.149 0.851 27 H 0.162 0.838 28 H 0.103 0.897 29 H 0.045 0.955 30 H 0.025 0.975 31 H 0.069 0.931 32 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -10.623 9.151 -2.080 14.175 hybrid contribution 1.148 -0.639 0.880 1.581 sum -9.475 8.512 -1.200 12.794 Atomic orbital electron populations 1.20797 0.88572 1.03955 1.03345 1.19958 0.94813 0.82584 0.99950 1.20410 0.94790 0.95908 1.08947 1.20915 0.93617 0.98142 1.00986 1.20658 1.00753 0.89433 0.99928 1.19466 0.83224 0.96161 1.05760 1.20955 0.99108 0.88393 1.09586 1.17197 0.84304 0.94987 0.94428 0.95031 1.21764 1.03488 0.98224 0.95304 1.21194 0.96838 1.30213 1.05819 0.92640 1.24943 0.96097 0.96503 0.96431 1.69890 1.02857 1.45061 1.35271 0.86566 0.78150 0.80148 0.83339 1.19847 1.21035 1.21101 1.23641 0.89587 1.00048 0.96589 1.77638 1.22564 0.83409 1.32265 1.45998 1.05520 1.05143 1.48667 0.90366 0.90251 0.90085 0.84048 0.85092 0.83847 0.89714 0.95469 0.97484 0.93093 0.79697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.04 36.01 0.36 -0.90 16 2 C 0.13 2.05 6.81 -81.67 -0.56 1.49 16 3 C -0.18 -2.34 9.58 -39.91 -0.38 -2.72 16 4 C -0.11 -1.60 10.07 -39.52 -0.40 -2.00 16 5 C -0.09 -1.55 9.94 -39.39 -0.39 -1.94 16 6 C 0.07 1.46 6.76 -84.27 -0.57 0.89 16 7 C -0.17 -3.88 4.83 -104.25 -0.50 -4.38 16 8 C 0.11 2.79 2.67 -92.92 -0.25 2.54 16 9 H 0.03 0.85 7.67 -51.93 -0.40 0.45 16 10 C -0.13 -3.16 8.86 37.16 0.33 -2.83 16 11 C -0.50 -13.77 8.42 -34.44 -0.29 -14.06 16 12 H 0.06 1.54 7.73 -52.48 -0.41 1.13 16 13 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 14 N -0.89 -25.20 11.32 55.43 0.63 -24.57 16 15 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 C 0.08 1.63 11.43 -17.59 -0.20 1.43 16 20 N -0.33 -6.88 12.42 30.46 0.38 -6.50 16 21 N -0.28 -5.52 3.89 -7.01 -0.03 -5.55 16 22 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.08 1.02 8.06 -51.93 -0.42 0.60 16 24 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 25 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 26 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 27 H 0.14 2.42 7.76 -52.49 -0.41 2.02 16 28 H 0.08 2.24 6.07 -51.93 -0.32 1.92 16 29 H 0.03 0.62 8.02 -51.93 -0.42 0.20 16 30 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.19 3.60 8.06 -52.49 -0.42 3.18 16 LS Contribution 275.35 15.07 4.15 4.15 Total: -1.00 -30.71 275.35 -6.87 -37.58 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -4.03 Total: -0.51 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: -2.95 Total: -20.89 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.98 Total: -36.62 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.71 -6.87 -37.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260173262.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.519 kcal (2) G-P(sol) polarization free energy of solvation -30.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds