Wall clock time and date at job start Mon Mar 30 2020 03:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34935 * 119.66691 * 2 1 4 4 C 1.40475 * 120.43114 * 179.97438 * 3 2 1 5 5 C 1.36068 * 119.59169 * 0.02562 * 4 3 2 6 6 C 1.40803 * 119.22169 * 0.02562 * 5 4 3 7 7 C 1.38935 * 132.96588 * 180.02562 * 6 5 4 8 8 C 1.50700 * 126.21478 * 359.93256 * 7 6 5 9 9 H 1.08997 * 109.47326 * 0.02562 * 8 7 6 10 10 C 1.53000 * 109.47492 * 240.00364 * 8 7 6 11 11 C 1.50701 * 109.46926 * 120.00082 * 8 7 6 12 12 H 1.08003 * 119.99918 * 0.02562 * 11 8 7 13 13 C 1.37879 * 120.00212 * 179.97438 * 11 8 7 14 14 N 1.31508 * 119.99795 * 0.02562 * 13 11 8 15 15 Si 1.86797 * 119.99926 * 180.02562 * 13 11 8 16 16 H 1.48502 * 109.47444 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47174 * 120.00249 * 15 13 11 18 18 H 1.48504 * 109.47178 * 240.00143 * 15 13 11 19 19 C 1.38545 * 107.56798 * 179.97438 * 7 6 5 20 20 N 1.31488 * 109.00584 * 359.97438 * 19 7 6 21 21 N 1.36530 * 119.67551 * 179.97438 * 2 1 3 22 22 H 1.08996 * 109.46700 * 89.99892 * 1 2 3 23 23 H 1.09003 * 109.46671 * 209.99679 * 1 2 3 24 24 H 1.08997 * 109.47044 * 329.99633 * 1 2 3 25 25 H 1.07999 * 119.78474 * 359.97438 * 3 2 1 26 26 H 1.07996 * 120.20797 * 179.75170 * 4 3 2 27 27 H 1.07991 * 120.39215 * 179.97438 * 5 4 3 28 28 H 1.08997 * 109.47305 * 180.02562 * 10 8 7 29 29 H 1.08997 * 109.46907 * 300.00345 * 10 8 7 30 30 H 1.09000 * 109.46714 * 60.00290 * 10 8 7 31 31 H 0.97000 * 120.00249 * 179.97438 * 14 13 11 32 32 H 1.07993 * 125.49751 * 179.97438 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1749 1.1725 0.0000 4 6 3.5795 1.1912 0.0005 5 6 4.2672 0.0171 0.0005 6 6 3.5542 -1.1971 -0.0006 7 6 3.9514 -2.5285 -0.0004 8 6 5.3710 -3.0341 -0.0003 9 1 6.0581 -2.1879 0.0001 10 6 5.6096 -3.8847 -1.2495 11 6 5.6058 -3.8717 1.2303 12 1 4.8068 -4.0231 1.9409 13 6 6.8404 -4.4456 1.4484 14 7 7.8131 -4.2616 0.5828 15 14 7.1311 -5.4845 2.9734 16 1 5.8863 -5.5369 3.7814 17 1 7.5164 -6.8603 2.5689 18 1 8.2216 -4.8825 3.7819 19 6 2.8052 -3.3068 -0.0013 20 7 1.7525 -2.5189 -0.0014 21 7 2.1830 -1.1862 0.0005 22 1 -0.3632 0.0000 -1.0276 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 1.6260 2.1026 -0.0004 26 1 4.1104 2.1317 -0.0035 27 1 5.3471 0.0164 0.0005 28 1 6.6363 -4.2507 -1.2491 29 1 4.9226 -4.7308 -1.2495 30 1 5.4399 -3.2787 -2.1395 31 1 8.6818 -4.6651 0.7363 32 1 2.7804 -4.3864 -0.0018 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260173262.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:03 Heat of formation + Delta-G solvation = 73.374260 kcal Electronic energy + Delta-G solvation = -15542.735699 eV Core-core repulsion = 13083.086675 eV Total energy + Delta-G solvation = -2459.649024 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.83926 -38.40193 -36.28591 -34.48067 -32.77127 -31.65832 -29.29637 -27.75942 -27.15107 -23.92882 -23.78976 -22.92709 -20.37232 -18.45664 -17.71665 -17.34058 -16.69990 -16.55729 -16.35935 -15.03954 -14.88270 -14.56057 -14.18661 -14.00604 -13.41032 -13.34535 -13.04817 -12.88888 -12.80951 -12.65057 -12.38137 -12.23394 -12.07061 -11.75925 -11.32374 -11.11056 -10.72883 -10.42276 -10.10405 -8.23596 -7.98067 -6.18532 -0.02758 0.27241 1.40688 1.42697 1.48200 1.54239 1.90246 2.45077 2.59381 3.21012 3.34195 3.84914 3.90727 4.16793 4.28280 4.43244 4.65562 4.67992 4.72101 4.81890 4.88498 5.02196 5.08043 5.14357 5.29692 5.32078 5.44137 5.62633 5.66655 5.80615 5.96939 6.13453 6.15149 6.41910 6.74926 6.89353 7.48893 8.98975 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037080 B = 0.007125 C = 0.006841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.943759 B = 3928.854338 C = 4092.047242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.107 3.893 3 C -0.160 4.160 4 C -0.075 4.075 5 C -0.137 4.137 6 C 0.069 3.931 7 C -0.224 4.224 8 C 0.118 3.882 9 H 0.003 0.997 10 C -0.118 4.118 11 C -0.517 4.517 12 H 0.043 0.957 13 C 0.016 3.984 14 N -0.917 5.917 15 Si 0.952 3.048 16 H -0.274 1.274 17 H -0.277 1.277 18 H -0.279 1.279 19 C 0.068 3.932 20 N -0.352 5.352 21 N -0.284 5.284 22 H 0.091 0.909 23 H 0.060 0.940 24 H 0.121 0.879 25 H 0.198 0.802 26 H 0.177 0.823 27 H 0.137 0.863 28 H 0.060 0.940 29 H 0.029 0.971 30 H 0.017 0.983 31 H 0.262 0.738 32 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.069 11.994 -1.637 16.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.001 3.999 3 C -0.181 4.181 4 C -0.098 4.098 5 C -0.157 4.157 6 C -0.049 4.049 7 C -0.235 4.235 8 C 0.099 3.901 9 H 0.021 0.979 10 C -0.176 4.176 11 C -0.555 4.555 12 H 0.062 0.938 13 C -0.182 4.182 14 N -0.557 5.557 15 Si 0.778 3.222 16 H -0.198 1.198 17 H -0.203 1.203 18 H -0.205 1.205 19 C -0.106 4.106 20 N -0.177 5.177 21 N -0.053 5.053 22 H 0.110 0.890 23 H 0.079 0.921 24 H 0.140 0.860 25 H 0.215 0.785 26 H 0.194 0.806 27 H 0.155 0.845 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -12.234 11.827 -1.665 17.098 hybrid contribution 1.547 -1.174 0.723 2.073 sum -10.687 10.653 -0.942 15.119 Atomic orbital electron populations 1.20924 0.85718 1.05032 1.04528 1.21018 0.97087 0.81803 0.99996 1.21161 0.94548 0.97071 1.05353 1.21544 0.94381 0.98379 0.95450 1.20808 1.00896 0.89862 1.04112 1.19769 0.84333 0.96513 1.04309 1.20653 0.98013 0.90060 1.14744 1.16920 0.85754 0.93630 0.93823 0.97860 1.21597 1.01850 0.98360 0.95774 1.21425 0.96739 1.30761 1.06575 0.93833 1.25661 0.95848 0.97578 0.99152 1.70006 1.03162 1.45806 1.36688 0.85605 0.77887 0.78777 0.79975 1.19839 1.20272 1.20525 1.23658 0.89548 1.00426 0.96936 1.77545 1.22142 0.84131 1.33906 1.46307 1.05353 1.05915 1.47716 0.89018 0.92107 0.86039 0.78536 0.80590 0.84480 0.92078 0.95176 0.96347 0.92919 0.79385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 10.04 71.24 0.72 -1.31 16 2 C 0.11 2.93 6.81 41.07 0.28 3.21 16 3 C -0.16 -3.32 9.58 22.06 0.21 -3.11 16 4 C -0.08 -1.78 10.07 22.31 0.22 -1.55 16 5 C -0.14 -4.72 9.94 22.39 0.22 -4.50 16 6 C 0.07 2.91 6.76 39.11 0.26 3.18 16 7 C -0.22 -10.70 4.83 -19.62 -0.09 -10.80 16 8 C 0.12 6.31 2.67 -12.29 -0.03 6.27 16 9 H 0.00 0.19 7.67 -2.39 -0.02 0.17 16 10 C -0.12 -6.02 8.86 71.98 0.64 -5.38 16 11 C -0.52 -29.54 8.42 25.60 0.22 -29.32 16 12 H 0.04 2.53 7.73 -2.91 -0.02 2.50 16 13 C 0.02 0.90 5.30 84.66 0.45 1.35 16 14 N -0.92 -53.36 11.32 21.45 0.24 -53.12 16 15 Si 0.95 44.61 29.54 68.60 2.03 46.64 16 16 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 C 0.07 3.04 11.43 84.82 0.97 4.01 16 20 N -0.35 -14.75 12.42 -57.54 -0.71 -15.47 16 21 N -0.28 -10.87 3.89 -176.09 -0.69 -11.56 16 22 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.06 1.43 8.06 -2.39 -0.02 1.41 16 24 H 0.12 1.35 8.07 -2.39 -0.02 1.33 16 25 H 0.20 2.00 8.06 -2.91 -0.02 1.97 16 26 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 27 H 0.14 4.77 7.76 -2.92 -0.02 4.75 16 28 H 0.06 3.37 6.07 -2.39 -0.01 3.36 16 29 H 0.03 1.45 8.02 -2.39 -0.02 1.43 16 30 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 32 H 0.19 7.82 8.06 -2.91 -0.02 7.79 16 Total: -1.00 -70.21 275.35 6.04 -64.17 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: 1.11 Total: 7.28 kcal Atomic # 6 Polarization: -42.01 SS G_CDS: 4.06 Total: -37.95 kcal Atomic # 7 Polarization: -78.99 SS G_CDS: -1.16 Total: -80.14 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -70.21 6.04 -64.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260173262.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.548 kcal (2) G-P(sol) polarization free energy of solvation -70.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds