Wall clock time and date at job start Mon Mar 30 2020 03:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34927 * 119.67025 * 2 1 4 4 C 1.40472 * 120.43304 * 180.02562 * 3 2 1 5 5 C 1.36071 * 119.58941 * 359.97438 * 4 3 2 6 6 C 1.40796 * 119.22178 * 0.02562 * 5 4 3 7 7 C 1.38931 * 132.96000 * 179.97438 * 6 5 4 8 8 C 1.50703 * 126.21858 * 359.96131 * 7 6 5 9 9 H 1.09007 * 109.46560 * 0.02562 * 8 7 6 10 10 C 1.52998 * 109.47077 * 120.00043 * 8 7 6 11 11 C 1.50701 * 109.47151 * 240.00397 * 8 7 6 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 8 7 13 13 C 1.37871 * 119.99694 * 180.27762 * 11 8 7 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 8 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 8 16 16 H 1.48504 * 109.47266 * 60.00049 * 15 13 11 17 17 H 1.48504 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47383 * 299.99456 * 15 13 11 19 19 C 1.38548 * 107.56430 * 180.22570 * 7 6 5 20 20 N 1.31478 * 109.01156 * 359.61524 * 19 7 6 21 21 N 1.36537 * 119.66644 * 180.02562 * 2 1 3 22 22 H 1.08993 * 109.47192 * 89.99304 * 1 2 3 23 23 H 1.09003 * 109.46905 * 209.99426 * 1 2 3 24 24 H 1.09002 * 109.46814 * 329.99175 * 1 2 3 25 25 H 1.07999 * 119.78450 * 0.05016 * 3 2 1 26 26 H 1.08005 * 120.20803 * 180.02562 * 4 3 2 27 27 H 1.07994 * 120.38776 * 180.02562 * 5 4 3 28 28 H 1.08998 * 109.47156 * 59.99979 * 10 8 7 29 29 H 1.09004 * 109.46783 * 180.02562 * 10 8 7 30 30 H 1.09005 * 109.46870 * 300.00040 * 10 8 7 31 31 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 32 32 H 1.08003 * 125.49420 * 179.75336 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1750 1.1724 0.0000 4 6 3.5796 1.1911 -0.0005 5 6 4.2671 0.0169 -0.0005 6 6 3.5541 -1.1972 -0.0005 7 6 3.9514 -2.5285 -0.0010 8 6 5.3710 -3.0342 -0.0025 9 1 6.0581 -2.1879 -0.0027 10 6 5.6107 -3.8848 1.2465 11 6 5.6046 -3.8718 -1.2333 12 1 4.8049 -4.0232 -1.9432 13 6 6.8374 -4.4499 -1.4498 14 7 7.8111 -4.2658 -0.5851 15 14 7.1247 -5.4947 -2.9714 16 1 6.8955 -4.6727 -4.1868 17 1 8.5223 -5.9969 -2.9704 18 1 6.1851 -6.6446 -2.9671 19 6 2.8052 -3.3068 -0.0059 20 7 1.7525 -2.5191 -0.0001 21 7 2.1828 -1.1864 -0.0005 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3633 0.8899 0.5140 25 1 1.6261 2.1025 0.0008 26 1 4.1105 2.1316 -0.0001 27 1 5.3471 0.0162 -0.0005 28 1 4.9237 -4.7309 1.2472 29 1 6.6377 -4.2501 1.2456 30 1 5.4417 -3.2788 2.1367 31 1 8.6783 -4.6729 -0.7373 32 1 2.7804 -4.3866 -0.0113 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260173266.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:04 Heat of formation + Delta-G solvation = 91.053090 kcal Electronic energy + Delta-G solvation = -15541.892373 eV Core-core repulsion = 13083.009961 eV Total energy + Delta-G solvation = -2458.882413 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.39787 -37.05231 -34.45024 -33.06670 -30.96897 -30.19936 -27.89073 -26.47214 -25.04513 -22.55528 -22.19111 -21.37127 -18.73639 -16.80989 -16.09807 -15.82986 -15.30010 -15.15150 -14.57541 -13.73272 -13.17925 -13.10422 -12.73459 -12.54288 -12.33599 -11.85731 -11.42136 -11.33518 -11.15329 -10.88296 -10.82176 -10.38214 -10.29141 -9.95920 -9.59249 -9.42773 -8.85693 -8.71211 -8.31139 -6.68488 -5.94672 -4.01439 1.23496 1.64283 2.82599 3.34513 3.38838 3.40225 3.45330 3.94489 4.47565 4.55100 4.98402 5.20840 5.32513 5.36267 5.42572 5.49171 5.61883 5.69417 6.06434 6.13472 6.21015 6.43559 6.62816 6.69845 6.92650 6.97049 7.08147 7.30645 7.47652 7.54150 7.74766 7.96768 8.16116 8.25802 8.49485 9.00762 9.62875 11.09982 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037123 B = 0.007125 C = 0.006838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.071092 B = 3929.028153 C = 4093.862285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.133 3.867 3 C -0.178 4.178 4 C -0.114 4.114 5 C -0.088 4.088 6 C 0.070 3.930 7 C -0.170 4.170 8 C 0.111 3.889 9 H 0.031 0.969 10 C -0.130 4.130 11 C -0.504 4.504 12 H 0.054 0.946 13 C 0.062 3.938 14 N -0.892 5.892 15 Si 0.891 3.109 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.076 3.924 20 N -0.334 5.334 21 N -0.284 5.284 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.142 0.858 26 H 0.131 0.869 27 H 0.144 0.856 28 H 0.026 0.974 29 H 0.084 0.916 30 H 0.006 0.994 31 H 0.260 0.740 32 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.440 9.301 2.069 13.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.027 3.973 3 C -0.201 4.201 4 C -0.137 4.137 5 C -0.108 4.108 6 C -0.046 4.046 7 C -0.181 4.181 8 C 0.092 3.908 9 H 0.050 0.950 10 C -0.188 4.188 11 C -0.542 4.542 12 H 0.072 0.928 13 C -0.139 4.139 14 N -0.531 5.531 15 Si 0.719 3.281 16 H -0.204 1.204 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.099 4.099 20 N -0.159 5.159 21 N -0.053 5.053 22 H 0.097 0.903 23 H 0.097 0.903 24 H 0.099 0.901 25 H 0.160 0.840 26 H 0.149 0.851 27 H 0.162 0.838 28 H 0.045 0.955 29 H 0.103 0.897 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -10.576 9.139 2.104 14.135 hybrid contribution 1.119 -0.644 -0.920 1.585 sum -9.457 8.495 1.183 12.767 Atomic orbital electron populations 1.20798 0.88573 1.03898 1.03401 1.19958 0.94812 0.82582 0.99949 1.20406 0.94791 0.95908 1.08951 1.20917 0.93618 0.98142 1.00984 1.20658 1.00754 0.89434 0.99927 1.19464 0.83227 0.96162 1.05749 1.20959 0.99113 0.88395 1.09590 1.17186 0.84292 0.94962 0.94391 0.95048 1.21768 1.03499 0.98228 0.95302 1.21115 0.96900 1.30313 1.05904 0.92752 1.24936 0.96076 0.96484 0.96410 1.69870 1.02942 1.44896 1.35371 0.86680 0.77083 0.80766 0.83602 1.20409 1.21319 1.20279 1.23643 0.89586 1.00053 0.96582 1.77635 1.22566 0.83406 1.32268 1.46003 1.05519 1.05141 1.48675 0.90339 0.90269 0.90093 0.84048 0.85090 0.83846 0.95474 0.89697 0.97494 0.92975 0.79695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.04 36.01 0.36 -0.90 16 2 C 0.13 2.05 6.81 -81.67 -0.56 1.50 16 3 C -0.18 -2.34 9.58 -39.92 -0.38 -2.72 16 4 C -0.11 -1.60 10.07 -39.52 -0.40 -2.00 16 5 C -0.09 -1.55 9.94 -39.39 -0.39 -1.94 16 6 C 0.07 1.47 6.76 -84.27 -0.57 0.90 16 7 C -0.17 -3.88 4.83 -104.25 -0.50 -4.39 16 8 C 0.11 2.81 2.68 -92.92 -0.25 2.56 16 9 H 0.03 0.84 7.67 -51.93 -0.40 0.44 16 10 C -0.13 -3.17 8.86 37.16 0.33 -2.84 16 11 C -0.50 -13.82 8.41 -34.44 -0.29 -14.11 16 12 H 0.05 1.50 7.72 -52.49 -0.41 1.10 16 13 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 14 N -0.89 -25.19 11.31 55.43 0.63 -24.57 16 15 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 C 0.08 1.63 11.43 -17.59 -0.20 1.43 16 20 N -0.33 -6.88 12.42 30.46 0.38 -6.50 16 21 N -0.28 -5.53 3.90 -7.01 -0.03 -5.55 16 22 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.08 1.00 8.06 -51.93 -0.42 0.58 16 24 H 0.08 0.68 8.07 -51.93 -0.42 0.26 16 25 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 26 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 27 H 0.14 2.43 7.76 -52.49 -0.41 2.02 16 28 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 29 H 0.08 2.24 6.06 -51.93 -0.31 1.93 16 30 H 0.01 0.14 8.14 -51.93 -0.42 -0.29 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.19 3.61 8.06 -52.48 -0.42 3.19 16 LS Contribution 275.33 15.07 4.15 4.15 Total: -1.00 -30.64 275.33 -6.87 -37.51 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -4.03 Total: -0.44 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: -2.95 Total: -20.90 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.98 Total: -36.62 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.64 -6.87 -37.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260173266.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.564 kcal (2) G-P(sol) polarization free energy of solvation -30.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds