Wall clock time and date at job start Mon Mar 30 2020 03:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34927 * 119.67025 * 2 1 4 4 C 1.40472 * 120.43304 * 180.02562 * 3 2 1 5 5 C 1.36071 * 119.58941 * 359.97438 * 4 3 2 6 6 C 1.40796 * 119.22178 * 0.02562 * 5 4 3 7 7 C 1.38931 * 132.96000 * 179.97438 * 6 5 4 8 8 C 1.50703 * 126.21858 * 359.96131 * 7 6 5 9 9 H 1.09007 * 109.46560 * 0.02562 * 8 7 6 10 10 C 1.52998 * 109.47077 * 120.00043 * 8 7 6 11 11 C 1.50701 * 109.47151 * 240.00397 * 8 7 6 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 8 7 13 13 C 1.37871 * 119.99694 * 180.27762 * 11 8 7 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 8 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 8 16 16 H 1.48504 * 109.47266 * 60.00049 * 15 13 11 17 17 H 1.48504 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47383 * 299.99456 * 15 13 11 19 19 C 1.38548 * 107.56430 * 180.22570 * 7 6 5 20 20 N 1.31478 * 109.01156 * 359.61524 * 19 7 6 21 21 N 1.36537 * 119.66644 * 180.02562 * 2 1 3 22 22 H 1.08993 * 109.47192 * 89.99304 * 1 2 3 23 23 H 1.09003 * 109.46905 * 209.99426 * 1 2 3 24 24 H 1.09002 * 109.46814 * 329.99175 * 1 2 3 25 25 H 1.07999 * 119.78450 * 0.05016 * 3 2 1 26 26 H 1.08005 * 120.20803 * 180.02562 * 4 3 2 27 27 H 1.07994 * 120.38776 * 180.02562 * 5 4 3 28 28 H 1.08998 * 109.47156 * 59.99979 * 10 8 7 29 29 H 1.09004 * 109.46783 * 180.02562 * 10 8 7 30 30 H 1.09005 * 109.46870 * 300.00040 * 10 8 7 31 31 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 32 32 H 1.08003 * 125.49420 * 179.75336 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1750 1.1724 0.0000 4 6 3.5796 1.1911 -0.0005 5 6 4.2671 0.0169 -0.0005 6 6 3.5541 -1.1972 -0.0005 7 6 3.9514 -2.5285 -0.0010 8 6 5.3710 -3.0342 -0.0025 9 1 6.0581 -2.1879 -0.0027 10 6 5.6107 -3.8848 1.2465 11 6 5.6046 -3.8718 -1.2333 12 1 4.8049 -4.0232 -1.9432 13 6 6.8374 -4.4499 -1.4498 14 7 7.8111 -4.2658 -0.5851 15 14 7.1247 -5.4947 -2.9714 16 1 6.8955 -4.6727 -4.1868 17 1 8.5223 -5.9969 -2.9704 18 1 6.1851 -6.6446 -2.9671 19 6 2.8052 -3.3068 -0.0059 20 7 1.7525 -2.5191 -0.0001 21 7 2.1828 -1.1864 -0.0005 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3633 0.8899 0.5140 25 1 1.6261 2.1025 0.0008 26 1 4.1105 2.1316 -0.0001 27 1 5.3471 0.0162 -0.0005 28 1 4.9237 -4.7309 1.2472 29 1 6.6377 -4.2501 1.2456 30 1 5.4417 -3.2788 2.1367 31 1 8.6783 -4.6729 -0.7373 32 1 2.7804 -4.3866 -0.0113 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260173266.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:04 Heat of formation + Delta-G solvation = 73.550256 kcal Electronic energy + Delta-G solvation = -15542.651353 eV Core-core repulsion = 13083.009961 eV Total energy + Delta-G solvation = -2459.641393 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.83922 -38.40224 -36.28489 -34.47995 -32.76782 -31.65884 -29.29589 -27.75994 -27.14625 -23.92818 -23.78893 -22.92592 -20.37050 -18.45380 -17.70971 -17.34126 -16.69777 -16.55917 -16.36116 -15.03821 -14.88463 -14.55372 -14.18470 -14.00922 -13.39624 -13.33825 -13.06069 -12.89580 -12.79467 -12.63203 -12.39665 -12.25036 -12.06544 -11.75270 -11.31973 -11.12148 -10.73431 -10.41487 -10.10468 -8.23324 -7.97784 -6.18225 -0.02797 0.27233 1.42672 1.43638 1.48103 1.51682 1.90224 2.45293 2.59385 3.21351 3.34180 3.84923 3.90738 4.16781 4.28266 4.43326 4.65413 4.68012 4.72100 4.81886 4.88521 5.02307 5.08000 5.14355 5.29714 5.32112 5.44136 5.62401 5.66653 5.80653 5.97025 6.13526 6.15110 6.42000 6.74937 6.89186 7.49053 8.99094 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037123 B = 0.007125 C = 0.006838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.071092 B = 3929.028153 C = 4093.862285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.107 3.893 3 C -0.160 4.160 4 C -0.075 4.075 5 C -0.137 4.137 6 C 0.069 3.931 7 C -0.224 4.224 8 C 0.119 3.881 9 H 0.003 0.997 10 C -0.118 4.118 11 C -0.519 4.519 12 H 0.044 0.956 13 C 0.017 3.983 14 N -0.916 5.916 15 Si 0.951 3.049 16 H -0.277 1.277 17 H -0.281 1.281 18 H -0.272 1.272 19 C 0.068 3.932 20 N -0.352 5.352 21 N -0.284 5.284 22 H 0.089 0.911 23 H 0.061 0.939 24 H 0.122 0.878 25 H 0.198 0.802 26 H 0.177 0.823 27 H 0.137 0.863 28 H 0.029 0.971 29 H 0.061 0.939 30 H 0.017 0.983 31 H 0.262 0.738 32 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.070 11.970 1.634 16.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.001 3.999 3 C -0.181 4.181 4 C -0.098 4.098 5 C -0.157 4.157 6 C -0.049 4.049 7 C -0.235 4.235 8 C 0.099 3.901 9 H 0.021 0.979 10 C -0.176 4.176 11 C -0.557 4.557 12 H 0.062 0.938 13 C -0.182 4.182 14 N -0.556 5.556 15 Si 0.777 3.223 16 H -0.202 1.202 17 H -0.206 1.206 18 H -0.197 1.197 19 C -0.106 4.106 20 N -0.177 5.177 21 N -0.053 5.053 22 H 0.107 0.893 23 H 0.080 0.920 24 H 0.141 0.859 25 H 0.215 0.785 26 H 0.194 0.806 27 H 0.155 0.845 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -12.227 11.801 1.672 17.075 hybrid contribution 1.529 -1.173 -0.760 2.071 sum -10.699 10.628 0.912 15.108 Atomic orbital electron populations 1.20926 0.85717 1.05125 1.04439 1.21018 0.97087 0.81799 0.99994 1.21159 0.94547 0.97075 1.05353 1.21546 0.94384 0.98379 0.95448 1.20808 1.00897 0.89869 1.04113 1.19767 0.84337 0.96512 1.04302 1.20656 0.98015 0.90061 1.14743 1.16910 0.85745 0.93606 0.93796 0.97890 1.21602 1.01865 0.98356 0.95778 1.21370 0.96842 1.30840 1.06683 0.93794 1.25657 0.95823 0.97576 0.99124 1.69992 1.03198 1.45627 1.36789 0.85727 0.77208 0.79248 0.80141 1.20223 1.20582 1.19686 1.23656 0.89545 1.00423 0.96933 1.77542 1.22141 0.84125 1.33900 1.46312 1.05350 1.05914 1.47723 0.89268 0.91967 0.85928 0.78533 0.80589 0.84484 0.95204 0.92045 0.96367 0.92904 0.79396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 10.04 71.24 0.72 -1.31 16 2 C 0.11 2.93 6.81 41.07 0.28 3.21 16 3 C -0.16 -3.32 9.58 22.05 0.21 -3.11 16 4 C -0.08 -1.78 10.07 22.31 0.22 -1.55 16 5 C -0.14 -4.73 9.94 22.39 0.22 -4.50 16 6 C 0.07 2.92 6.76 39.11 0.26 3.18 16 7 C -0.22 -10.70 4.83 -19.62 -0.09 -10.80 16 8 C 0.12 6.35 2.68 -12.29 -0.03 6.31 16 9 H 0.00 0.17 7.67 -2.38 -0.02 0.15 16 10 C -0.12 -6.03 8.86 71.98 0.64 -5.39 16 11 C -0.52 -29.66 8.41 25.60 0.22 -29.45 16 12 H 0.04 2.53 7.72 -2.91 -0.02 2.51 16 13 C 0.02 0.94 5.30 84.65 0.45 1.39 16 14 N -0.92 -53.36 11.31 21.45 0.24 -53.11 16 15 Si 0.95 44.54 29.54 68.60 2.03 46.57 16 16 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 19 C 0.07 3.04 11.43 84.82 0.97 4.01 16 20 N -0.35 -14.74 12.42 -57.54 -0.71 -15.45 16 21 N -0.28 -10.87 3.90 -176.09 -0.69 -11.56 16 22 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.06 1.44 8.06 -2.39 -0.02 1.42 16 24 H 0.12 1.33 8.07 -2.39 -0.02 1.31 16 25 H 0.20 2.00 8.06 -2.91 -0.02 1.97 16 26 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 27 H 0.14 4.77 7.76 -2.91 -0.02 4.75 16 28 H 0.03 1.44 8.03 -2.39 -0.02 1.42 16 29 H 0.06 3.39 6.06 -2.38 -0.01 3.38 16 30 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 32 H 0.19 7.82 8.06 -2.91 -0.02 7.79 16 Total: -1.00 -70.05 275.33 6.03 -64.02 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 1.11 Total: 7.55 kcal Atomic # 6 Polarization: -42.07 SS G_CDS: 4.06 Total: -38.01 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -1.16 Total: -80.13 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -70.05 6.03 -64.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260173266.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.570 kcal (2) G-P(sol) polarization free energy of solvation -70.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds