Wall clock time and date at job start Mon Mar 30 2020 03:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35110 * 125.69024 * 2 1 4 4 N 1.36833 * 107.18045 * 180.02562 * 3 2 1 5 5 C 1.36485 * 132.56639 * 180.02562 * 4 3 2 6 6 C 1.34960 * 120.60636 * 179.97438 * 5 4 3 7 7 C 1.40468 * 120.29962 * 0.02562 * 6 5 4 8 8 C 1.50706 * 120.14850 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.46949 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47103 * 59.99898 * 8 7 6 11 11 C 1.50698 * 109.47294 * 299.99534 * 8 7 6 12 12 H 1.08005 * 119.99819 * 0.02562 * 11 8 7 13 13 C 1.37875 * 120.00046 * 179.97438 * 11 8 7 14 14 N 1.31518 * 119.99944 * 0.02562 * 13 11 8 15 15 Si 1.86798 * 119.99979 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47046 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46873 * 120.00118 * 15 13 11 18 18 H 1.48497 * 109.47510 * 240.00153 * 15 13 11 19 19 C 1.36021 * 119.69535 * 0.27077 * 7 6 5 20 20 C 1.37072 * 107.00180 * 0.02562 * 4 3 2 21 21 N 1.32553 * 108.03574 * 0.02562 * 20 4 3 22 22 H 1.08994 * 109.47472 * 89.99217 * 1 2 3 23 23 H 1.08994 * 109.47284 * 210.00381 * 1 2 3 24 24 H 1.09013 * 109.46767 * 329.99599 * 1 2 3 25 25 H 1.07998 * 126.40772 * 0.02562 * 3 2 1 26 26 H 1.07999 * 119.69880 * 359.97438 * 5 4 3 27 27 H 1.08003 * 119.84363 * 180.02562 * 6 5 4 28 28 H 1.09001 * 109.47230 * 179.97438 * 10 8 7 29 29 H 1.09001 * 109.47375 * 299.99936 * 10 8 7 30 30 H 1.09000 * 109.47140 * 59.99953 * 10 8 7 31 31 H 0.96997 * 119.99752 * 179.97438 * 14 13 11 32 32 H 1.07993 * 120.33455 * 179.74801 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2952 1.0973 0.0000 4 7 3.5927 0.6629 -0.0006 5 6 4.7873 1.3230 -0.0004 6 6 5.9505 0.6387 -0.0006 7 6 5.9464 -0.7660 -0.0016 8 6 7.2473 -1.5268 -0.0024 9 1 7.0421 -2.5973 -0.0026 10 6 8.0519 -1.1625 1.2469 11 6 8.0392 -1.1664 -1.2328 12 1 7.6406 -0.4570 -1.9430 13 6 9.2731 -1.7414 -1.4514 14 7 9.7588 -2.6048 -0.5863 15 14 10.2551 -1.2942 -2.9762 16 1 9.4937 -0.3074 -3.7835 17 1 11.5561 -0.7034 -2.5714 18 1 10.4965 -2.5156 -3.7855 19 6 4.7628 -1.4363 -0.0079 20 6 3.5566 -0.7073 -0.0015 21 7 2.2859 -1.0844 -0.0021 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8901 0.5140 25 1 1.9632 2.1250 0.0004 26 1 4.8019 2.4029 -0.0001 27 1 6.8888 1.1736 0.0000 28 1 8.9927 -1.7130 1.2466 29 1 8.2571 -0.0919 1.2476 30 1 7.4791 -1.4232 2.1368 31 1 10.6267 -3.0096 -0.7403 32 1 4.7476 -2.5161 -0.0128 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260176776.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:08 Heat of formation + Delta-G solvation = 57.277017 kcal Electronic energy + Delta-G solvation = -15306.849290 eV Core-core repulsion = 12846.502237 eV Total energy + Delta-G solvation = -2460.347053 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.64749 -39.02923 -36.26172 -34.38936 -32.77281 -31.68041 -29.98685 -27.70519 -27.19218 -24.31959 -24.01479 -21.96413 -21.02769 -18.74448 -18.38087 -17.15744 -16.84776 -16.77597 -15.95494 -15.48862 -14.92997 -14.56458 -14.12636 -14.02172 -13.67817 -13.44467 -13.18367 -12.98677 -12.84432 -12.69619 -12.28471 -12.20614 -12.10189 -11.56663 -11.48290 -11.00467 -10.86573 -10.47889 -9.51775 -8.61621 -8.09588 -6.24710 -0.03286 0.43931 1.42435 1.45668 1.55747 1.79565 1.95966 2.42613 2.69037 3.18220 3.33688 3.61028 3.91787 4.08539 4.33169 4.42924 4.47157 4.58035 4.88058 4.89593 4.91934 5.00354 5.14021 5.16427 5.19704 5.23616 5.43307 5.60093 5.67775 5.82365 5.94076 6.05839 6.25727 6.30552 6.83455 7.01104 7.43778 8.94716 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.046355 B = 0.006023 C = 0.005925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.885744 B = 4647.788565 C = 4724.965905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.028 3.972 3 C -0.108 4.108 4 N -0.367 5.367 5 C 0.053 3.947 6 C -0.128 4.128 7 C -0.019 4.019 8 C 0.073 3.927 9 H 0.005 0.995 10 C -0.122 4.122 11 C -0.520 4.520 12 H 0.057 0.943 13 C 0.017 3.983 14 N -0.916 5.916 15 Si 0.955 3.045 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.286 1.286 19 C -0.138 4.138 20 C 0.214 3.786 21 N -0.546 5.546 22 H 0.081 0.919 23 H 0.065 0.935 24 H 0.101 0.899 25 H 0.221 0.779 26 H 0.208 0.792 27 H 0.163 0.837 28 H 0.061 0.939 29 H 0.044 0.956 30 H 0.022 0.978 31 H 0.262 0.738 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.543 10.875 1.587 15.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 C -0.238 4.238 4 N -0.039 5.039 5 C -0.068 4.068 6 C -0.149 4.149 7 C -0.025 4.025 8 C 0.054 3.946 9 H 0.023 0.977 10 C -0.180 4.180 11 C -0.558 4.558 12 H 0.075 0.925 13 C -0.182 4.182 14 N -0.555 5.555 15 Si 0.781 3.219 16 H -0.191 1.191 17 H -0.203 1.203 18 H -0.212 1.212 19 C -0.159 4.159 20 C -0.030 4.030 21 N -0.269 5.269 22 H 0.099 0.901 23 H 0.084 0.916 24 H 0.120 0.880 25 H 0.237 0.763 26 H 0.225 0.775 27 H 0.180 0.820 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.726 10.041 1.620 15.522 hybrid contribution 1.206 0.236 -0.735 1.432 sum -10.520 10.277 0.885 14.733 Atomic orbital electron populations 1.20201 0.84496 1.03981 1.03426 1.21653 0.98527 0.87878 1.02310 1.22987 0.79791 1.02272 1.18752 1.43012 1.07172 1.08145 1.45572 1.22182 0.81649 1.00220 1.02740 1.20990 0.98500 0.93589 1.01802 1.20360 0.95237 0.94838 0.92045 1.17770 0.88166 0.93356 0.95268 0.97684 1.21616 1.01075 1.00193 0.95071 1.21315 1.02473 1.25674 1.06359 0.92524 1.25687 0.98552 0.94823 0.99150 1.70018 1.19107 1.29597 1.36785 0.85542 0.78653 0.77973 0.79699 1.19137 1.20266 1.21185 1.20052 0.88071 0.99965 1.07808 1.20914 0.94067 0.81806 1.06174 1.70581 0.98957 1.31307 1.26014 0.90054 0.91607 0.88048 0.76284 0.77503 0.81966 0.91980 0.93725 0.95869 0.92850 0.85353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.26 10.42 71.23 0.74 -0.52 16 2 C 0.03 0.85 7.06 41.58 0.29 1.15 16 3 C -0.11 -2.86 11.66 83.19 0.97 -1.89 16 4 N -0.37 -11.91 2.94 -352.16 -1.04 -12.94 16 5 C 0.05 1.48 10.95 83.21 0.91 2.40 16 6 C -0.13 -4.39 8.71 22.06 0.19 -4.20 16 7 C -0.02 -0.79 4.72 -19.83 -0.09 -0.89 16 8 C 0.07 3.58 2.48 -12.29 -0.03 3.55 16 9 H 0.00 0.28 7.87 -2.39 -0.02 0.26 16 10 C -0.12 -5.62 8.79 71.98 0.63 -4.98 16 11 C -0.52 -27.28 8.26 25.60 0.21 -27.07 16 12 H 0.06 2.93 7.61 -2.91 -0.02 2.90 16 13 C 0.02 0.90 5.30 84.65 0.45 1.35 16 14 N -0.92 -51.23 11.32 21.45 0.24 -50.98 16 15 Si 0.96 42.13 29.54 68.60 2.03 44.16 16 16 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 17 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 19 C -0.14 -5.90 9.72 22.42 0.22 -5.68 16 20 C 0.21 8.54 7.81 134.11 1.05 9.59 16 21 N -0.55 -21.51 11.32 -182.41 -2.06 -23.57 16 22 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 25 H 0.22 3.50 8.06 -2.91 -0.02 3.47 16 26 H 0.21 3.53 8.06 -2.91 -0.02 3.51 16 27 H 0.16 5.12 7.62 -2.91 -0.02 5.10 16 28 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 29 H 0.04 1.87 7.42 -2.39 -0.02 1.85 16 30 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 32 H 0.13 5.58 7.94 -2.91 -0.02 5.56 16 Total: -1.00 -66.13 273.82 5.82 -60.31 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 1.11 Total: 10.23 kcal Atomic # 6 Polarization: -32.75 SS G_CDS: 5.54 Total: -27.21 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -2.86 Total: -87.50 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -66.13 5.82 -60.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260176776.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.592 kcal (2) G-P(sol) polarization free energy of solvation -66.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds