Wall clock time and date at job start Mon Mar 30 2020 03:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35105 * 125.68367 * 2 1 4 4 N 1.36843 * 107.17766 * 180.02562 * 3 2 1 5 5 C 1.36485 * 132.57113 * 179.97438 * 4 3 2 6 6 C 1.34946 * 120.61223 * 179.69885 * 5 4 3 7 7 C 1.40467 * 120.29808 * 0.60685 * 6 5 4 8 8 C 1.50700 * 120.15623 * 179.68976 * 7 6 5 9 9 H 1.08994 * 109.47551 * 179.72521 * 8 7 6 10 10 C 1.52996 * 109.47211 * 299.73019 * 8 7 6 11 11 C 1.50702 * 109.46869 * 59.72575 * 8 7 6 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 8 7 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 8 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 8 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 C 1.36029 * 119.69367 * 359.41979 * 7 6 5 20 20 C 1.37076 * 106.99799 * 359.97438 * 4 3 2 21 21 N 1.32552 * 108.03735 * 359.97438 * 20 4 3 22 22 H 1.08992 * 109.47241 * 90.00789 * 1 2 3 23 23 H 1.09002 * 109.47045 * 210.00849 * 1 2 3 24 24 H 1.09004 * 109.47311 * 330.00391 * 1 2 3 25 25 H 1.07999 * 126.41223 * 0.02562 * 3 2 1 26 26 H 1.08007 * 119.69166 * 0.02625 * 5 4 3 27 27 H 1.08002 * 119.85254 * 180.32067 * 6 5 4 28 28 H 1.09001 * 109.47094 * 179.97438 * 10 8 7 29 29 H 1.09003 * 109.46851 * 299.99806 * 10 8 7 30 30 H 1.09003 * 109.47532 * 59.99881 * 10 8 7 31 31 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 32 32 H 1.08001 * 120.33494 * 180.29242 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2950 1.0974 0.0000 4 7 3.5927 0.6630 -0.0006 5 6 4.7873 1.3231 -0.0013 6 6 5.9505 0.6390 0.0043 7 6 5.9464 -0.7657 -0.0018 8 6 7.2473 -1.5265 -0.0026 9 1 7.0422 -2.5970 -0.0027 10 6 8.0512 -1.1610 -1.2520 11 6 8.0400 -1.1671 1.2277 12 1 7.6416 -0.4590 1.9392 13 6 9.2714 -1.7471 1.4481 14 7 9.7565 -2.6097 0.5820 15 14 10.2505 -1.3074 2.9769 16 1 9.4654 -1.6619 4.1866 17 1 11.5303 -2.0608 2.9787 18 1 10.5347 0.1501 2.9807 19 6 4.7628 -1.4362 -0.0016 20 6 3.5566 -0.7072 -0.0003 21 7 2.2859 -1.0844 0.0009 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3633 -0.8899 0.5140 24 1 -0.3634 0.8900 0.5138 25 1 1.9630 2.1251 0.0004 26 1 4.8018 2.4031 -0.0010 27 1 6.8887 1.1738 0.0089 28 1 8.9923 -1.7110 -1.2523 29 1 7.4778 -1.4209 -2.1418 30 1 8.2564 -0.0905 -1.2518 31 1 10.6229 -3.0174 0.7369 32 1 4.7477 -2.5161 -0.0015 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260176782.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:10 Heat of formation + Delta-G solvation = 72.635681 kcal Electronic energy + Delta-G solvation = -15305.626595 eV Core-core repulsion = 12845.945544 eV Total energy + Delta-G solvation = -2459.681052 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.31715 -37.56298 -34.63505 -32.70300 -31.45379 -30.07260 -28.62650 -26.43714 -25.21495 -22.75455 -22.66378 -20.52424 -19.52938 -17.36363 -16.60236 -15.58701 -15.46338 -15.13455 -14.40027 -14.12649 -13.52419 -13.12292 -12.87105 -12.66430 -12.35417 -12.02352 -11.61832 -11.35987 -11.17750 -10.96815 -10.87486 -10.56004 -10.21554 -9.93423 -9.72499 -9.61077 -9.02190 -8.46472 -8.20640 -7.23501 -6.10079 -4.18302 1.33749 1.84152 3.06357 3.20471 3.26165 3.31544 3.34063 4.11673 4.36745 4.61836 4.81525 5.08126 5.21364 5.42316 5.48048 5.64145 5.72654 5.79696 5.84516 5.96294 6.23384 6.45520 6.60093 6.71128 6.85664 6.95930 7.03023 7.10717 7.20317 7.54250 7.60105 7.81483 7.97797 8.24997 8.32991 8.83347 9.47090 10.95379 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.046285 B = 0.006024 C = 0.005926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.797140 B = 4647.076419 C = 4723.875962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.049 3.951 3 C -0.126 4.126 4 N -0.361 5.361 5 C 0.026 3.974 6 C -0.106 4.106 7 C -0.008 4.008 8 C 0.074 3.926 9 H 0.042 0.958 10 C -0.133 4.133 11 C -0.514 4.514 12 H 0.057 0.943 13 C 0.065 3.935 14 N -0.887 5.887 15 Si 0.895 3.105 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.277 1.277 19 C -0.120 4.120 20 C 0.245 3.755 21 N -0.513 5.513 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.172 0.828 26 H 0.155 0.845 27 H 0.153 0.847 28 H 0.088 0.912 29 H 0.011 0.989 30 H 0.029 0.971 31 H 0.263 0.737 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.095 7.754 -1.994 12.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.084 4.084 3 C -0.257 4.257 4 N -0.033 5.033 5 C -0.096 4.096 6 C -0.127 4.127 7 C -0.014 4.014 8 C 0.055 3.945 9 H 0.060 0.940 10 C -0.190 4.190 11 C -0.552 4.552 12 H 0.075 0.925 13 C -0.137 4.137 14 N -0.525 5.525 15 Si 0.722 3.278 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.140 4.140 20 C 0.002 3.998 21 N -0.234 5.234 22 H 0.087 0.913 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.189 0.811 26 H 0.172 0.828 27 H 0.170 0.830 28 H 0.107 0.893 29 H 0.030 0.970 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.257 6.907 -2.025 12.530 hybrid contribution 0.907 1.200 0.886 1.746 sum -9.349 8.107 -1.139 12.427 Atomic orbital electron populations 1.20051 0.87627 1.02601 1.02174 1.20771 0.96424 0.88441 1.02767 1.22133 0.81199 1.00424 1.21894 1.42726 1.05746 1.08924 1.45865 1.21528 0.83139 0.98231 1.06685 1.20960 0.96869 0.95101 0.99737 1.20631 0.96952 0.93315 0.90518 1.17921 0.86347 0.94936 0.95272 0.94032 1.21787 1.02469 0.99808 0.94977 1.20981 1.02417 1.26051 1.05711 0.92457 1.24938 0.97449 0.94768 0.96541 1.69867 1.18959 1.28451 1.35219 0.86614 0.79258 0.78520 0.83378 1.20214 1.21192 1.20219 1.20177 0.87153 1.00367 1.06318 1.21041 0.94278 0.80317 1.04151 1.70614 0.98398 1.29041 1.25351 0.91300 0.91066 0.91360 0.81096 0.82765 0.82978 0.89315 0.97035 0.95174 0.92703 0.83818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.42 36.00 0.38 -0.39 16 2 C 0.05 0.80 7.06 -82.98 -0.59 0.22 16 3 C -0.13 -1.93 11.66 -16.43 -0.19 -2.12 16 4 N -0.36 -6.36 2.95 -62.66 -0.18 -6.55 16 5 C 0.03 0.41 10.95 -16.65 -0.18 0.23 16 6 C -0.11 -1.89 8.70 -39.91 -0.35 -2.24 16 7 C -0.01 -0.17 4.72 -104.58 -0.49 -0.66 16 8 C 0.07 1.74 2.48 -92.92 -0.23 1.51 16 9 H 0.04 1.06 7.87 -51.93 -0.41 0.65 16 10 C -0.13 -2.99 8.79 37.16 0.33 -2.66 16 11 C -0.51 -13.21 8.25 -34.44 -0.28 -13.50 16 12 H 0.06 1.46 7.61 -52.49 -0.40 1.07 16 13 C 0.07 1.71 5.31 -17.82 -0.09 1.61 16 14 N -0.89 -24.13 11.33 55.43 0.63 -23.50 16 15 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 19 C -0.12 -2.45 9.72 -39.35 -0.38 -2.83 16 20 C 0.25 4.92 7.81 -156.05 -1.22 3.71 16 21 N -0.51 -10.18 11.32 -9.01 -0.10 -10.29 16 22 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.17 1.94 8.06 -52.49 -0.42 1.52 16 26 H 0.15 1.80 8.06 -52.48 -0.42 1.38 16 27 H 0.15 2.55 7.64 -52.49 -0.40 2.15 16 28 H 0.09 2.21 6.08 -51.93 -0.32 1.90 16 29 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.03 0.63 7.44 -51.93 -0.39 0.24 16 31 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.14 2.84 7.94 -52.49 -0.42 2.42 16 LS Contribution 273.86 15.07 4.13 4.13 Total: -1.00 -29.42 273.86 -7.86 -37.28 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -4.00 Total: 0.66 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -3.31 Total: -17.13 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.34 Total: -40.34 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.42 -7.86 -37.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260176782.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.915 kcal (2) G-P(sol) polarization free energy of solvation -29.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds