Wall clock time and date at job start Mon Mar 30 2020 03:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35105 * 125.68367 * 2 1 4 4 N 1.36843 * 107.17766 * 180.02562 * 3 2 1 5 5 C 1.36485 * 132.57113 * 179.97438 * 4 3 2 6 6 C 1.34946 * 120.61223 * 179.69885 * 5 4 3 7 7 C 1.40467 * 120.29808 * 0.60685 * 6 5 4 8 8 C 1.50700 * 120.15623 * 179.68976 * 7 6 5 9 9 H 1.08994 * 109.47551 * 179.72521 * 8 7 6 10 10 C 1.52996 * 109.47211 * 299.73019 * 8 7 6 11 11 C 1.50702 * 109.46869 * 59.72575 * 8 7 6 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 8 7 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 8 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 8 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 C 1.36029 * 119.69367 * 359.41979 * 7 6 5 20 20 C 1.37076 * 106.99799 * 359.97438 * 4 3 2 21 21 N 1.32552 * 108.03735 * 359.97438 * 20 4 3 22 22 H 1.08992 * 109.47241 * 90.00789 * 1 2 3 23 23 H 1.09002 * 109.47045 * 210.00849 * 1 2 3 24 24 H 1.09004 * 109.47311 * 330.00391 * 1 2 3 25 25 H 1.07999 * 126.41223 * 0.02562 * 3 2 1 26 26 H 1.08007 * 119.69166 * 0.02625 * 5 4 3 27 27 H 1.08002 * 119.85254 * 180.32067 * 6 5 4 28 28 H 1.09001 * 109.47094 * 179.97438 * 10 8 7 29 29 H 1.09003 * 109.46851 * 299.99806 * 10 8 7 30 30 H 1.09003 * 109.47532 * 59.99881 * 10 8 7 31 31 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 32 32 H 1.08001 * 120.33494 * 180.29242 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2950 1.0974 0.0000 4 7 3.5927 0.6630 -0.0006 5 6 4.7873 1.3231 -0.0013 6 6 5.9505 0.6390 0.0043 7 6 5.9464 -0.7657 -0.0018 8 6 7.2473 -1.5265 -0.0026 9 1 7.0422 -2.5970 -0.0027 10 6 8.0512 -1.1610 -1.2520 11 6 8.0400 -1.1671 1.2277 12 1 7.6416 -0.4590 1.9392 13 6 9.2714 -1.7471 1.4481 14 7 9.7565 -2.6097 0.5820 15 14 10.2505 -1.3074 2.9769 16 1 9.4654 -1.6619 4.1866 17 1 11.5303 -2.0608 2.9787 18 1 10.5347 0.1501 2.9807 19 6 4.7628 -1.4362 -0.0016 20 6 3.5566 -0.7072 -0.0003 21 7 2.2859 -1.0844 0.0009 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3633 -0.8899 0.5140 24 1 -0.3634 0.8900 0.5138 25 1 1.9630 2.1251 0.0004 26 1 4.8018 2.4031 -0.0010 27 1 6.8887 1.1738 0.0089 28 1 8.9923 -1.7110 -1.2523 29 1 7.4778 -1.4209 -2.1418 30 1 8.2564 -0.0905 -1.2518 31 1 10.6229 -3.0174 0.7369 32 1 4.7477 -2.5161 -0.0015 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260176782.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:09 Heat of formation + Delta-G solvation = 57.369838 kcal Electronic energy + Delta-G solvation = -15306.288572 eV Core-core repulsion = 12845.945544 eV Total energy + Delta-G solvation = -2460.343028 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.64728 -39.02919 -36.25941 -34.38716 -32.77291 -31.68133 -29.98687 -27.70615 -27.18581 -24.31852 -24.01429 -21.96390 -21.02583 -18.74462 -18.37615 -17.15051 -16.85288 -16.77094 -15.95838 -15.48889 -14.93424 -14.54309 -14.12886 -14.02178 -13.67933 -13.44218 -13.18135 -12.99557 -12.80676 -12.68604 -12.33683 -12.20998 -12.09279 -11.56915 -11.47235 -11.00301 -10.88182 -10.46738 -9.51804 -8.61599 -8.09123 -6.24371 -0.03315 0.43900 1.44867 1.46224 1.53402 1.79500 1.96018 2.42957 2.69029 3.18607 3.33665 3.60983 3.91794 4.08560 4.33130 4.42887 4.47141 4.58061 4.87992 4.89593 4.92060 5.00385 5.13995 5.16441 5.19718 5.23628 5.43300 5.59978 5.67689 5.82337 5.94131 6.05828 6.25734 6.30690 6.83286 7.01099 7.43951 8.94825 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.046285 B = 0.006024 C = 0.005926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.797140 B = 4647.076419 C = 4723.875962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.028 3.972 3 C -0.108 4.108 4 N -0.367 5.367 5 C 0.053 3.947 6 C -0.128 4.128 7 C -0.019 4.019 8 C 0.073 3.927 9 H 0.005 0.995 10 C -0.121 4.121 11 C -0.522 4.522 12 H 0.057 0.943 13 C 0.017 3.983 14 N -0.916 5.916 15 Si 0.955 3.045 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.265 1.265 19 C -0.139 4.139 20 C 0.214 3.786 21 N -0.546 5.546 22 H 0.082 0.918 23 H 0.064 0.936 24 H 0.100 0.900 25 H 0.221 0.779 26 H 0.208 0.792 27 H 0.163 0.837 28 H 0.061 0.939 29 H 0.022 0.978 30 H 0.044 0.956 31 H 0.262 0.738 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.512 10.902 -1.566 15.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 C -0.238 4.238 4 N -0.039 5.039 5 C -0.068 4.068 6 C -0.149 4.149 7 C -0.025 4.025 8 C 0.055 3.945 9 H 0.023 0.977 10 C -0.179 4.179 11 C -0.560 4.560 12 H 0.075 0.925 13 C -0.182 4.182 14 N -0.555 5.555 15 Si 0.781 3.219 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.189 1.189 19 C -0.159 4.159 20 C -0.030 4.030 21 N -0.269 5.269 22 H 0.101 0.899 23 H 0.083 0.917 24 H 0.119 0.881 25 H 0.237 0.763 26 H 0.225 0.775 27 H 0.180 0.820 28 H 0.080 0.920 29 H 0.041 0.959 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.689 10.061 -1.599 15.506 hybrid contribution 1.184 0.235 0.728 1.410 sum -10.505 10.296 -0.871 14.735 Atomic orbital electron populations 1.20201 0.84497 1.03922 1.03484 1.21651 0.98529 0.87880 1.02311 1.22989 0.79785 1.02272 1.18749 1.43017 1.07175 1.08142 1.45579 1.22181 0.81643 1.00222 1.02730 1.20984 0.98500 0.93582 1.01803 1.20363 0.95233 0.94843 0.92032 1.17759 0.88154 0.93333 0.95259 0.97715 1.21615 1.01056 1.00186 0.95072 1.21261 1.02660 1.25774 1.06355 0.92509 1.25688 0.98534 0.94779 0.99172 1.70006 1.19222 1.29434 1.36799 0.85658 0.77691 0.78763 0.79823 1.20354 1.21121 1.18947 1.20055 0.88080 0.99957 1.07828 1.20912 0.94064 0.81809 1.06168 1.70579 0.98960 1.31311 1.26019 0.89893 0.91692 0.88125 0.76276 0.77495 0.81970 0.91995 0.95871 0.93737 0.92840 0.85370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.26 10.42 71.23 0.74 -0.52 16 2 C 0.03 0.85 7.06 41.58 0.29 1.14 16 3 C -0.11 -2.86 11.66 83.19 0.97 -1.89 16 4 N -0.37 -11.91 2.95 -352.16 -1.04 -12.94 16 5 C 0.05 1.49 10.95 83.21 0.91 2.40 16 6 C -0.13 -4.38 8.70 22.06 0.19 -4.19 16 7 C -0.02 -0.79 4.72 -19.83 -0.09 -0.88 16 8 C 0.07 3.61 2.48 -12.29 -0.03 3.58 16 9 H 0.00 0.26 7.87 -2.39 -0.02 0.24 16 10 C -0.12 -5.61 8.79 71.98 0.63 -4.97 16 11 C -0.52 -27.40 8.25 25.60 0.21 -27.19 16 12 H 0.06 2.92 7.61 -2.91 -0.02 2.90 16 13 C 0.02 0.93 5.31 84.66 0.45 1.38 16 14 N -0.92 -51.25 11.33 21.45 0.24 -51.01 16 15 Si 0.95 42.08 29.54 68.60 2.03 44.10 16 16 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 17 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 18 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 19 C -0.14 -5.91 9.72 22.42 0.22 -5.69 16 20 C 0.21 8.55 7.81 134.11 1.05 9.59 16 21 N -0.55 -21.52 11.32 -182.42 -2.06 -23.59 16 22 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.22 3.49 8.06 -2.91 -0.02 3.47 16 26 H 0.21 3.53 8.06 -2.91 -0.02 3.51 16 27 H 0.16 5.12 7.64 -2.91 -0.02 5.10 16 28 H 0.06 3.19 6.08 -2.39 -0.01 3.18 16 29 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.04 1.87 7.44 -2.39 -0.02 1.85 16 31 H 0.26 14.05 8.31 -92.70 -0.77 13.28 16 32 H 0.13 5.58 7.94 -2.91 -0.02 5.55 16 Total: -1.00 -66.06 273.86 5.82 -60.25 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 1.11 Total: 10.44 kcal Atomic # 6 Polarization: -32.79 SS G_CDS: 5.54 Total: -27.25 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -2.86 Total: -87.54 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Total: -66.06 5.82 -60.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260176782.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.616 kcal (2) G-P(sol) polarization free energy of solvation -66.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds