Wall clock time and date at job start Mon Mar 30 2020 03:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35100 * 126.41276 * 2 1 4 4 C 1.50700 * 125.68501 * 0.25066 * 3 2 1 5 5 C 1.50704 * 109.46954 * 269.71270 * 4 3 2 6 6 H 1.07993 * 119.99916 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99970 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99934 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99957 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47377 * 59.99489 * 9 7 5 11 11 H 1.48503 * 109.47158 * 179.97438 * 9 7 5 12 12 H 1.48510 * 109.47225 * 299.99448 * 9 7 5 13 13 N 1.33514 * 108.62733 * 179.97438 * 3 2 1 14 14 C 1.32548 * 109.15783 * 0.02562 * 13 3 2 15 15 C 1.40936 * 132.32727 * 180.02562 * 14 13 3 16 16 C 1.50701 * 120.33808 * 359.97438 * 15 14 13 17 17 C 1.36026 * 119.32772 * 179.97438 * 15 14 13 18 18 C 1.40469 * 119.69528 * 359.97438 * 17 15 14 19 19 C 1.34958 * 120.29891 * 359.97438 * 18 17 15 20 20 N 1.36481 * 120.60811 * 0.04247 * 19 18 17 21 21 H 1.08997 * 109.47368 * 90.01663 * 1 2 3 22 22 H 1.08999 * 109.47564 * 210.02533 * 1 2 3 23 23 H 1.09000 * 109.47226 * 330.02419 * 1 2 3 24 24 H 1.09000 * 109.47439 * 29.70774 * 4 3 2 25 25 H 1.09006 * 109.47492 * 149.71301 * 4 3 2 26 26 H 0.97002 * 120.00177 * 179.97438 * 8 7 5 27 27 H 1.08991 * 109.47203 * 90.00016 * 16 15 14 28 28 H 1.08995 * 109.47103 * 210.00150 * 16 15 14 29 29 H 1.09005 * 109.46771 * 329.99762 * 16 15 14 30 30 H 1.08002 * 120.15292 * 180.02562 * 17 15 14 31 31 H 1.08004 * 119.85162 * 179.97438 * 18 17 15 32 32 H 1.07993 * 119.69201 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3090 1.0872 0.0000 4 6 1.8457 2.5213 0.0054 5 6 1.6931 3.0051 -1.4137 6 1 1.9103 2.3408 -2.2370 7 6 1.2772 4.2963 -1.6609 8 7 1.0133 5.1054 -0.6583 9 14 1.0887 4.8962 -3.4198 10 1 0.0880 4.0557 -4.1250 11 1 0.6322 6.3093 -3.4146 12 1 2.3958 4.8005 -4.1182 13 7 3.5803 0.6794 0.0006 14 6 3.6120 -0.6457 0.0004 15 6 4.6764 -1.5695 0.0012 16 6 6.1038 -1.0861 0.0021 17 6 4.4023 -2.9018 0.0013 18 6 3.0669 -3.3375 0.0010 19 6 2.0582 -2.4409 0.0012 20 7 2.3192 -1.1013 0.0009 21 1 -0.3634 -0.0003 -1.0276 22 1 -0.3634 -0.8897 0.5142 23 1 -0.3634 0.8902 0.5135 24 1 0.8865 2.5914 0.5182 25 1 2.5803 3.1385 0.5227 26 1 0.7211 6.0139 -0.8321 27 1 6.4473 -0.9694 1.0298 28 1 6.7337 -1.8126 -0.5112 29 1 6.1628 -0.1267 -0.5120 30 1 5.2076 -3.6214 0.0023 31 1 2.8463 -4.3948 0.0006 32 1 1.0351 -2.7867 0.0015 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260188133.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:36 Heat of formation + Delta-G solvation = 69.802870 kcal Electronic energy + Delta-G solvation = -15417.698608 eV Core-core repulsion = 12957.894717 eV Total energy + Delta-G solvation = -2459.803891 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.25870 -37.28641 -34.27080 -33.20639 -31.20826 -30.77576 -28.14436 -26.72603 -25.74884 -23.50895 -22.02409 -20.95273 -19.30361 -16.78629 -16.44215 -16.33515 -15.40492 -15.16983 -14.41806 -14.04950 -13.22779 -13.10597 -12.56729 -12.43180 -12.39579 -12.20926 -11.91133 -11.54638 -11.39381 -11.17638 -11.14500 -10.70240 -10.56620 -10.14346 -9.86284 -9.39318 -9.18685 -8.35757 -7.89385 -7.13610 -5.98393 -4.00469 1.07576 1.70436 3.07478 3.36102 3.39617 3.41847 3.51033 4.03208 4.50818 4.63514 4.76247 4.99396 5.05952 5.31517 5.36854 5.54633 5.64266 5.69981 5.81251 5.96366 6.06463 6.08782 6.27046 6.32463 6.37592 6.49574 6.69230 6.96053 7.41327 7.46231 7.65422 7.79433 7.97741 8.38206 8.69986 9.01887 9.61727 11.11901 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.034247 B = 0.006965 C = 0.006411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.386942 B = 4019.255750 C = 4366.685949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.086 4.086 3 C 0.116 3.884 4 C 0.089 3.911 5 C -0.504 4.504 6 H 0.053 0.947 7 C 0.059 3.941 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.482 5.482 14 C 0.203 3.797 15 C -0.038 4.038 16 C -0.103 4.103 17 C -0.129 4.129 18 C -0.155 4.155 19 C 0.053 3.947 20 N -0.362 5.362 21 H 0.068 0.932 22 H 0.049 0.951 23 H 0.088 0.912 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.262 0.738 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.133 0.867 31 H 0.141 0.859 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.679 -16.162 2.051 16.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.196 4.196 3 C -0.016 4.016 4 C 0.051 3.949 5 C -0.543 4.543 6 H 0.072 0.928 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.203 5.203 14 C -0.038 4.038 15 C -0.041 4.041 16 C -0.160 4.160 17 C -0.153 4.153 18 C -0.177 4.177 19 C -0.070 4.070 20 N -0.036 5.036 21 H 0.087 0.913 22 H 0.068 0.932 23 H 0.106 0.894 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.151 0.849 31 H 0.159 0.841 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.220 -15.412 2.097 15.884 hybrid contribution -0.874 -0.312 -1.017 1.377 sum 2.346 -15.724 1.080 15.935 Atomic orbital electron populations 1.20053 0.86851 1.02350 1.02439 1.21090 0.94559 0.84487 1.19510 1.21784 0.86835 0.97628 0.95372 1.17806 0.96485 0.82548 0.98029 1.20921 1.44945 0.97074 0.91324 0.92827 1.24951 0.95490 0.96580 0.97165 1.69939 1.46146 1.06823 1.30551 0.86599 0.78547 0.77627 0.84904 1.20291 1.21195 1.20221 1.70730 1.22463 1.05165 1.21912 1.20790 0.83537 0.91315 1.08196 1.18956 0.94126 0.91064 0.99952 1.20627 0.90248 1.02468 1.02624 1.20721 0.96534 0.94499 1.03521 1.20558 0.92080 0.99292 1.05766 1.21442 1.00841 0.81307 1.03413 1.42698 1.09085 1.05166 1.46637 0.91323 0.93239 0.89378 0.94502 0.94468 0.92804 0.90912 0.91472 0.90225 0.84927 0.84100 0.82974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.01 10.09 36.01 0.36 -0.64 16 2 C -0.09 -1.80 7.03 -81.48 -0.57 -2.37 16 3 C 0.12 2.84 6.25 -82.98 -0.52 2.32 16 4 C 0.09 2.43 5.30 -29.03 -0.15 2.27 16 5 C -0.50 -14.67 9.09 -34.44 -0.31 -14.98 16 6 H 0.05 1.58 7.74 -52.49 -0.41 1.17 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 9 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 N -0.48 -11.63 11.31 -9.01 -0.10 -11.73 16 14 C 0.20 4.15 7.52 -156.05 -1.17 2.98 16 15 C -0.04 -0.61 5.90 -104.40 -0.62 -1.23 16 16 C -0.10 -1.37 10.03 36.01 0.36 -1.01 16 17 C -0.13 -1.63 9.72 -39.54 -0.38 -2.01 16 18 C -0.16 -1.83 9.99 -39.91 -0.40 -2.23 16 19 C 0.05 0.75 10.85 -16.65 -0.18 0.56 16 20 N -0.36 -6.84 2.94 -58.47 -0.17 -7.01 16 21 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.09 1.55 7.13 -51.93 -0.37 1.18 16 24 H 0.04 1.00 7.12 -51.93 -0.37 0.63 16 25 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 29 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 30 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 32 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 278.85 15.07 4.20 4.20 Total: -1.00 -33.35 278.85 -8.12 -41.47 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: -4.08 Total: -3.23 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -3.68 Total: -14.72 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.46 Total: -44.76 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -33.35 -8.12 -41.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260188133.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.276 kcal (2) G-P(sol) polarization free energy of solvation -33.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds