Wall clock time and date at job start Mon Mar 30 2020 03:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35100 * 126.41276 * 2 1 4 4 C 1.50700 * 125.68501 * 0.25066 * 3 2 1 5 5 C 1.50704 * 109.46954 * 269.71270 * 4 3 2 6 6 H 1.07993 * 119.99916 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99970 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99934 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99957 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47377 * 59.99489 * 9 7 5 11 11 H 1.48503 * 109.47158 * 179.97438 * 9 7 5 12 12 H 1.48510 * 109.47225 * 299.99448 * 9 7 5 13 13 N 1.33514 * 108.62733 * 179.97438 * 3 2 1 14 14 C 1.32548 * 109.15783 * 0.02562 * 13 3 2 15 15 C 1.40936 * 132.32727 * 180.02562 * 14 13 3 16 16 C 1.50701 * 120.33808 * 359.97438 * 15 14 13 17 17 C 1.36026 * 119.32772 * 179.97438 * 15 14 13 18 18 C 1.40469 * 119.69528 * 359.97438 * 17 15 14 19 19 C 1.34958 * 120.29891 * 359.97438 * 18 17 15 20 20 N 1.36481 * 120.60811 * 0.04247 * 19 18 17 21 21 H 1.08997 * 109.47368 * 90.01663 * 1 2 3 22 22 H 1.08999 * 109.47564 * 210.02533 * 1 2 3 23 23 H 1.09000 * 109.47226 * 330.02419 * 1 2 3 24 24 H 1.09000 * 109.47439 * 29.70774 * 4 3 2 25 25 H 1.09006 * 109.47492 * 149.71301 * 4 3 2 26 26 H 0.97002 * 120.00177 * 179.97438 * 8 7 5 27 27 H 1.08991 * 109.47203 * 90.00016 * 16 15 14 28 28 H 1.08995 * 109.47103 * 210.00150 * 16 15 14 29 29 H 1.09005 * 109.46771 * 329.99762 * 16 15 14 30 30 H 1.08002 * 120.15292 * 180.02562 * 17 15 14 31 31 H 1.08004 * 119.85162 * 179.97438 * 18 17 15 32 32 H 1.07993 * 119.69201 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3090 1.0872 0.0000 4 6 1.8457 2.5213 0.0054 5 6 1.6931 3.0051 -1.4137 6 1 1.9103 2.3408 -2.2370 7 6 1.2772 4.2963 -1.6609 8 7 1.0133 5.1054 -0.6583 9 14 1.0887 4.8962 -3.4198 10 1 0.0880 4.0557 -4.1250 11 1 0.6322 6.3093 -3.4146 12 1 2.3958 4.8005 -4.1182 13 7 3.5803 0.6794 0.0006 14 6 3.6120 -0.6457 0.0004 15 6 4.6764 -1.5695 0.0012 16 6 6.1038 -1.0861 0.0021 17 6 4.4023 -2.9018 0.0013 18 6 3.0669 -3.3375 0.0010 19 6 2.0582 -2.4409 0.0012 20 7 2.3192 -1.1013 0.0009 21 1 -0.3634 -0.0003 -1.0276 22 1 -0.3634 -0.8897 0.5142 23 1 -0.3634 0.8902 0.5135 24 1 0.8865 2.5914 0.5182 25 1 2.5803 3.1385 0.5227 26 1 0.7211 6.0139 -0.8321 27 1 6.4473 -0.9694 1.0298 28 1 6.7337 -1.8126 -0.5112 29 1 6.1628 -0.1267 -0.5120 30 1 5.2076 -3.6214 0.0023 31 1 2.8463 -4.3948 0.0006 32 1 1.0351 -2.7867 0.0015 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260188133.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:35 Heat of formation + Delta-G solvation = 49.376174 kcal Electronic energy + Delta-G solvation = -15418.584376 eV Core-core repulsion = 12957.894717 eV Total energy + Delta-G solvation = -2460.689659 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.67985 -38.56929 -35.61291 -35.26513 -32.86604 -32.08311 -29.95579 -27.86312 -27.23280 -25.48556 -23.31430 -22.36248 -20.85421 -18.57229 -18.07665 -17.73244 -16.89756 -16.65065 -16.07667 -15.18908 -14.53135 -14.50765 -14.30393 -14.07638 -13.74286 -13.60231 -13.32041 -13.16743 -12.83429 -12.66738 -12.55592 -12.45982 -12.41359 -11.91507 -11.52180 -11.34005 -10.82746 -10.59301 -9.38217 -8.53259 -8.20022 -6.33209 -0.06539 0.43483 1.36677 1.40968 1.49064 1.76006 2.01492 2.41484 2.66088 3.09089 3.40408 3.61625 3.88333 4.06482 4.15989 4.25899 4.37470 4.62080 4.71861 4.76766 4.78414 4.81518 5.00755 5.13772 5.19909 5.26049 5.28166 5.38114 5.52046 5.70611 5.77154 5.83751 6.18434 6.36575 6.74149 7.12621 7.33672 8.89278 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.034247 B = 0.006965 C = 0.006411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.386942 B = 4019.255750 C = 4366.685949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.090 4.090 3 C 0.064 3.936 4 C 0.104 3.896 5 C -0.523 4.523 6 H 0.042 0.958 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.263 1.263 11 H -0.273 1.273 12 H -0.276 1.276 13 N -0.542 5.542 14 C 0.193 3.807 15 C -0.080 4.080 16 C -0.097 4.097 17 C -0.094 4.094 18 C -0.135 4.135 19 C 0.030 3.970 20 N -0.365 5.365 21 H 0.070 0.930 22 H 0.090 0.910 23 H 0.071 0.929 24 H 0.025 0.975 25 H -0.006 1.006 26 H 0.268 0.732 27 H 0.078 0.922 28 H 0.104 0.896 29 H 0.044 0.956 30 H 0.181 0.819 31 H 0.197 0.803 32 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.628 -20.270 1.060 20.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.202 4.202 3 C -0.067 4.067 4 C 0.066 3.934 5 C -0.562 4.562 6 H 0.060 0.940 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.790 3.210 10 H -0.188 1.188 11 H -0.198 1.198 12 H -0.201 1.201 13 N -0.264 5.264 14 C -0.050 4.050 15 C -0.083 4.083 16 C -0.154 4.154 17 C -0.117 4.117 18 C -0.155 4.155 19 C -0.091 4.091 20 N -0.038 5.038 21 H 0.089 0.911 22 H 0.109 0.891 23 H 0.090 0.910 24 H 0.043 0.957 25 H 0.012 0.988 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.123 0.877 29 H 0.063 0.937 30 H 0.199 0.801 31 H 0.214 0.786 32 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 3.152 -19.540 1.113 19.824 hybrid contribution -0.750 0.691 -0.646 1.207 sum 2.402 -18.850 0.467 19.008 Atomic orbital electron populations 1.20079 0.84561 1.03553 1.02877 1.21238 0.95803 0.84391 1.18744 1.21328 0.88413 0.97118 0.99824 1.17388 0.94561 0.84714 0.96696 1.21121 1.45570 0.97633 0.91848 0.94009 1.25865 0.94673 0.96438 1.01956 1.70060 1.46443 1.07255 1.32939 0.85489 0.78688 0.77667 0.79114 1.18817 1.19817 1.20136 1.70518 1.22707 1.08109 1.25034 1.21434 0.85509 0.90771 1.07288 1.19408 0.93939 0.91990 1.02956 1.20621 0.89914 1.01795 1.03072 1.21409 0.98580 0.93525 0.98169 1.21323 0.90910 1.01458 1.01842 1.22360 1.03797 0.79288 1.03629 1.42806 1.08024 1.06578 1.46382 0.91121 0.89114 0.91015 0.95684 0.98778 0.92345 0.90352 0.87694 0.93677 0.80129 0.78641 0.79477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.81 10.09 71.24 0.72 -1.09 16 2 C -0.09 -3.89 7.03 41.06 0.29 -3.60 16 3 C 0.06 3.39 6.25 41.58 0.26 3.65 16 4 C 0.10 6.21 5.30 29.10 0.15 6.36 16 5 C -0.52 -32.37 9.09 25.60 0.23 -32.14 16 6 H 0.04 2.61 7.74 -2.91 -0.02 2.59 16 7 C 0.01 0.54 5.46 84.66 0.46 1.01 16 8 N -0.93 -57.75 13.29 21.45 0.28 -57.46 16 9 Si 0.97 46.31 29.54 68.60 2.03 48.34 16 10 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 13 N -0.54 -28.07 11.31 -182.41 -2.06 -30.13 16 14 C 0.19 8.00 7.52 134.11 1.01 9.01 16 15 C -0.08 -2.41 5.90 -19.72 -0.12 -2.52 16 16 C -0.10 -2.49 10.03 71.24 0.71 -1.78 16 17 C -0.09 -1.84 9.72 22.30 0.22 -1.62 16 18 C -0.13 -2.33 9.99 22.06 0.22 -2.11 16 19 C 0.03 0.73 10.85 83.22 0.90 1.64 16 20 N -0.37 -13.50 2.94 -338.89 -1.00 -14.49 16 21 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 22 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 23 H 0.07 2.65 7.13 -2.39 -0.02 2.63 16 24 H 0.03 1.49 7.12 -2.39 -0.02 1.47 16 25 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 26 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 27 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.10 1.81 8.09 -2.39 -0.02 1.79 16 29 H 0.04 1.45 8.10 -2.38 -0.02 1.43 16 30 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 31 H 0.20 1.36 8.06 -2.91 -0.02 1.34 16 32 H 0.19 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -80.87 278.85 5.42 -75.45 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: 1.11 Total: 1.49 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: 5.06 Total: -23.19 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -2.78 Total: -102.09 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -80.87 5.42 -75.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260188133.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.827 kcal (2) G-P(sol) polarization free energy of solvation -80.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds