Wall clock time and date at job start Mon Mar 30 2020 02:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 114.00147 * 2 1 4 4 C 1.52995 * 109.47406 * 184.76341 * 3 2 1 5 5 H 1.09005 * 109.46642 * 302.88773 * 4 3 2 6 6 C 1.50701 * 109.47498 * 62.88466 * 4 3 2 7 7 H 1.07999 * 119.99675 * 62.61138 * 6 4 3 8 8 C 1.37878 * 120.00264 * 242.34052 * 6 4 3 9 9 N 1.31517 * 119.99902 * 173.36249 * 8 6 4 10 10 Si 1.86797 * 119.99803 * 353.36664 * 8 6 4 11 11 H 1.48496 * 109.47394 * 84.83910 * 10 8 6 12 12 H 1.48504 * 109.46953 * 204.83946 * 10 8 6 13 13 H 1.48499 * 109.47493 * 324.83564 * 10 8 6 14 14 C 1.52995 * 109.47262 * 182.89154 * 4 3 2 15 15 H 1.09002 * 109.38607 * 299.99278 * 14 4 3 16 16 C 1.52579 * 109.39480 * 59.79802 * 14 4 3 17 17 C 1.52580 * 110.73050 * 190.82737 * 16 14 4 18 18 C 1.53098 * 109.95512 * 289.32436 * 17 16 14 19 19 S 1.81742 * 108.83915 * 63.02313 * 18 17 16 20 20 C 1.53092 * 109.39191 * 180.19684 * 14 4 3 21 21 H 1.09000 * 109.47517 * 64.78038 * 1 2 3 22 22 H 1.09007 * 109.46725 * 184.78082 * 1 2 3 23 23 H 1.09004 * 109.47016 * 304.77939 * 1 2 3 24 24 H 1.08996 * 109.47103 * 64.75616 * 3 2 1 25 25 H 1.09001 * 109.46756 * 304.75889 * 3 2 1 26 26 H 0.96997 * 119.99195 * 180.02562 * 9 8 6 27 27 H 1.09013 * 109.22245 * 311.14771 * 16 14 4 28 28 H 1.09000 * 109.22749 * 70.50020 * 16 14 4 29 29 H 1.09003 * 109.38855 * 49.47331 * 17 16 14 30 30 H 1.09000 * 109.39146 * 169.16950 * 17 16 14 31 31 H 1.08995 * 109.57099 * 182.82854 * 18 17 16 32 32 H 1.08996 * 109.57340 * 303.21364 * 18 17 16 33 33 H 1.09004 * 109.57509 * 296.63030 * 20 14 4 34 34 H 1.08995 * 109.57761 * 57.01661 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5309 1.1867 -0.1198 5 1 3.9127 0.5733 0.6964 6 6 3.8825 0.5452 -1.4373 7 1 3.6208 1.0354 -2.3634 8 6 4.5432 -0.6647 -1.4604 9 7 4.7346 -1.2877 -2.6028 10 14 5.1665 -1.4190 0.1308 11 1 4.0719 -2.1869 0.7767 12 1 6.3022 -2.3291 -0.1645 13 1 5.6211 -0.3408 1.0450 14 6 4.1585 2.5801 -0.0473 15 1 3.7758 3.1923 -0.8640 16 6 3.7974 3.2299 1.2852 17 6 4.1756 4.7080 1.2854 18 6 5.6987 4.8576 1.3270 19 16 6.4016 4.1276 -0.1817 20 6 5.6796 2.4596 -0.1723 21 1 -0.3634 0.4379 -0.9297 22 1 -0.3633 -1.0242 0.0857 23 1 -0.3633 0.5862 0.8441 24 1 1.7577 1.8157 0.9295 25 1 1.6227 1.8757 -0.8443 26 1 5.1991 -2.1391 -2.6189 27 1 2.7244 3.1339 1.4521 28 1 4.3317 2.7225 2.0884 29 1 3.7902 5.1803 0.3818 30 1 3.7403 5.1929 2.1592 31 1 5.9606 5.9144 1.3776 32 1 6.0928 4.3395 2.2013 33 1 6.0719 1.8952 0.6737 34 1 5.9303 1.9491 -1.1021 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260209021.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:16 Heat of formation + Delta-G solvation = -66.244590 kcal Electronic energy + Delta-G solvation = -14970.261550 eV Core-core repulsion = 12607.709399 eV Total energy + Delta-G solvation = -2362.552152 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.97763 -36.38801 -33.43558 -31.61850 -28.94006 -27.01396 -26.00243 -24.39185 -22.43853 -20.83119 -19.14437 -17.06355 -16.19494 -15.75849 -14.95042 -14.54393 -14.44250 -14.21356 -13.71319 -13.05236 -12.90077 -12.59141 -12.50109 -12.21477 -11.86712 -11.25479 -11.08507 -10.95702 -10.80039 -10.69042 -10.49820 -10.13772 -9.66894 -9.27299 -9.25206 -9.12186 -8.66150 -8.45981 -7.26877 -6.03474 -4.01575 2.24066 3.01861 3.34185 3.40295 3.43720 4.47559 4.63672 4.94765 5.04148 5.26671 5.29426 5.47708 5.64353 5.71173 5.74975 5.83956 5.88645 5.98108 6.04021 6.08698 6.17465 6.19487 6.32149 6.38652 6.68061 6.69170 6.78380 6.93424 7.20826 7.72975 8.08959 8.52065 9.00358 9.60628 11.09915 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.022270 B = 0.011212 C = 0.008509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.019760 B = 2496.746431 C = 3290.012593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.370 6.370 3 C 0.074 3.926 4 C 0.018 3.982 5 H 0.043 0.957 6 C -0.500 4.500 7 H 0.072 0.928 8 C 0.081 3.919 9 N -0.898 5.898 10 Si 0.873 3.127 11 H -0.273 1.273 12 H -0.293 1.293 13 H -0.268 1.268 14 C -0.071 4.071 15 H 0.075 0.925 16 C -0.135 4.135 17 C -0.119 4.119 18 C -0.079 4.079 19 S -0.300 6.300 20 C -0.050 4.050 21 H 0.034 0.966 22 H 0.074 0.926 23 H 0.027 0.973 24 H 0.022 0.978 25 H 0.037 0.963 26 H 0.263 0.737 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.862 8.923 8.737 12.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.288 6.288 3 C -0.003 4.003 4 C -0.003 4.003 5 H 0.061 0.939 6 C -0.537 4.537 7 H 0.091 0.909 8 C -0.121 4.121 9 N -0.536 5.536 10 Si 0.701 3.299 11 H -0.198 1.198 12 H -0.220 1.220 13 H -0.193 1.193 14 C -0.092 4.092 15 H 0.093 0.907 16 C -0.173 4.173 17 C -0.158 4.158 18 C -0.227 4.227 19 S -0.073 6.073 20 C -0.197 4.197 21 H 0.052 0.948 22 H 0.093 0.907 23 H 0.045 0.955 24 H 0.040 0.960 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.917 9.065 7.898 12.175 hybrid contribution -0.684 -0.855 1.665 1.993 sum -2.601 8.210 9.563 12.869 Atomic orbital electron populations 1.22613 0.83533 1.01459 0.98842 1.88033 1.17226 1.28598 1.94957 1.22812 0.97113 0.83512 0.96851 1.19229 0.89525 0.92456 0.99059 0.93864 1.20720 1.37109 1.04720 0.91181 0.90943 1.24986 0.95378 0.96197 0.95538 1.69907 1.42294 1.15993 1.25377 0.86940 0.78701 0.79417 0.84825 1.19829 1.21954 1.19342 1.21355 0.93452 0.98652 0.95737 0.90683 1.21838 1.01908 0.94471 0.99075 1.21715 0.93821 0.97814 1.02413 1.23347 0.98462 1.03044 0.97864 1.86715 1.66246 1.19304 1.35018 1.23572 0.97616 0.91355 1.07199 0.94763 0.90697 0.95467 0.96000 0.94453 0.92747 0.91114 0.92449 0.90830 0.91797 0.88739 0.90546 0.90977 0.85710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.66 16 2 O -0.37 -8.18 10.40 -35.23 -0.37 -8.54 16 3 C 0.07 1.51 5.07 37.16 0.19 1.70 16 4 C 0.02 0.40 1.60 -91.78 -0.15 0.26 16 5 H 0.04 1.01 4.71 -51.93 -0.24 0.77 16 6 C -0.50 -13.43 7.25 -34.44 -0.25 -13.68 16 7 H 0.07 2.14 8.06 -52.49 -0.42 1.72 16 8 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 9 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 10 Si 0.87 21.75 27.00 -169.99 -4.59 17.16 16 11 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 13 H -0.27 -6.25 6.38 56.52 0.36 -5.89 16 14 C -0.07 -1.35 1.62 -90.79 -0.15 -1.50 16 15 H 0.07 1.46 8.06 -51.93 -0.42 1.05 16 16 C -0.14 -2.10 4.82 -27.16 -0.13 -2.23 16 17 C -0.12 -1.56 5.75 -26.90 -0.15 -1.71 16 18 C -0.08 -1.06 6.45 37.21 0.24 -0.82 16 19 S -0.30 -5.15 22.33 -107.50 -2.40 -7.55 16 20 C -0.05 -0.98 5.53 37.21 0.21 -0.77 16 21 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 23 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.02 0.39 6.04 -51.93 -0.31 0.07 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.07 1.04 5.81 -51.92 -0.30 0.74 16 28 H 0.06 0.89 8.08 -51.93 -0.42 0.48 16 29 H 0.07 0.99 8.06 -51.93 -0.42 0.57 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.42 7.81 -51.93 -0.41 1.01 16 34 H 0.12 2.77 7.11 -51.93 -0.37 2.40 16 LS Contribution 277.88 15.07 4.19 4.19 Total: -1.00 -29.76 277.88 -7.02 -36.78 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -5.45 Total: -0.68 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 0.82 Total: -14.90 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.77 Total: -26.45 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: -0.37 Total: -8.54 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.59 Total: 17.16 kcal Atomic # 16 Polarization: -5.15 SS G_CDS: -2.40 Total: -7.55 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.76 -7.02 -36.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260209021.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.464 kcal (2) G-P(sol) polarization free energy of solvation -29.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds