Wall clock time and date at job start Mon Mar 30 2020 02:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 114.00147 * 2 1 4 4 C 1.52995 * 109.47406 * 184.76341 * 3 2 1 5 5 H 1.09005 * 109.46642 * 302.88773 * 4 3 2 6 6 C 1.50701 * 109.47498 * 62.88466 * 4 3 2 7 7 H 1.07999 * 119.99675 * 62.61138 * 6 4 3 8 8 C 1.37878 * 120.00264 * 242.34052 * 6 4 3 9 9 N 1.31517 * 119.99902 * 173.36249 * 8 6 4 10 10 Si 1.86797 * 119.99803 * 353.36664 * 8 6 4 11 11 H 1.48496 * 109.47394 * 84.83910 * 10 8 6 12 12 H 1.48504 * 109.46953 * 204.83946 * 10 8 6 13 13 H 1.48499 * 109.47493 * 324.83564 * 10 8 6 14 14 C 1.52995 * 109.47262 * 182.89154 * 4 3 2 15 15 H 1.09002 * 109.38607 * 299.99278 * 14 4 3 16 16 C 1.52579 * 109.39480 * 59.79802 * 14 4 3 17 17 C 1.52580 * 110.73050 * 190.82737 * 16 14 4 18 18 C 1.53098 * 109.95512 * 289.32436 * 17 16 14 19 19 S 1.81742 * 108.83915 * 63.02313 * 18 17 16 20 20 C 1.53092 * 109.39191 * 180.19684 * 14 4 3 21 21 H 1.09000 * 109.47517 * 64.78038 * 1 2 3 22 22 H 1.09007 * 109.46725 * 184.78082 * 1 2 3 23 23 H 1.09004 * 109.47016 * 304.77939 * 1 2 3 24 24 H 1.08996 * 109.47103 * 64.75616 * 3 2 1 25 25 H 1.09001 * 109.46756 * 304.75889 * 3 2 1 26 26 H 0.96997 * 119.99195 * 180.02562 * 9 8 6 27 27 H 1.09013 * 109.22245 * 311.14771 * 16 14 4 28 28 H 1.09000 * 109.22749 * 70.50020 * 16 14 4 29 29 H 1.09003 * 109.38855 * 49.47331 * 17 16 14 30 30 H 1.09000 * 109.39146 * 169.16950 * 17 16 14 31 31 H 1.08995 * 109.57099 * 182.82854 * 18 17 16 32 32 H 1.08996 * 109.57340 * 303.21364 * 18 17 16 33 33 H 1.09004 * 109.57509 * 296.63030 * 20 14 4 34 34 H 1.08995 * 109.57761 * 57.01661 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5309 1.1867 -0.1198 5 1 3.9127 0.5733 0.6964 6 6 3.8825 0.5452 -1.4373 7 1 3.6208 1.0354 -2.3634 8 6 4.5432 -0.6647 -1.4604 9 7 4.7346 -1.2877 -2.6028 10 14 5.1665 -1.4190 0.1308 11 1 4.0719 -2.1869 0.7767 12 1 6.3022 -2.3291 -0.1645 13 1 5.6211 -0.3408 1.0450 14 6 4.1585 2.5801 -0.0473 15 1 3.7758 3.1923 -0.8640 16 6 3.7974 3.2299 1.2852 17 6 4.1756 4.7080 1.2854 18 6 5.6987 4.8576 1.3270 19 16 6.4016 4.1276 -0.1817 20 6 5.6796 2.4596 -0.1723 21 1 -0.3634 0.4379 -0.9297 22 1 -0.3633 -1.0242 0.0857 23 1 -0.3633 0.5862 0.8441 24 1 1.7577 1.8157 0.9295 25 1 1.6227 1.8757 -0.8443 26 1 5.1991 -2.1391 -2.6189 27 1 2.7244 3.1339 1.4521 28 1 4.3317 2.7225 2.0884 29 1 3.7902 5.1803 0.3818 30 1 3.7403 5.1929 2.1592 31 1 5.9606 5.9144 1.3776 32 1 6.0928 4.3395 2.2013 33 1 6.0719 1.8952 0.6737 34 1 5.9303 1.9491 -1.1021 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260209021.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:15 Heat of formation + Delta-G solvation = -84.998075 kcal Electronic energy + Delta-G solvation = -14971.074762 eV Core-core repulsion = 12607.709399 eV Total energy + Delta-G solvation = -2363.365364 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.52266 -37.84194 -35.11731 -33.42271 -30.50927 -28.42559 -27.48726 -26.10093 -23.87988 -22.21010 -20.77842 -19.11231 -17.55805 -17.25103 -16.55329 -16.24328 -15.91919 -15.56717 -15.18865 -14.74184 -14.29653 -14.06916 -14.01318 -13.70857 -13.38018 -12.92752 -12.71437 -12.40288 -12.27174 -12.18528 -11.86348 -11.79311 -11.50628 -11.01116 -10.95406 -10.65588 -10.46667 -10.22885 -8.63100 -8.23050 -6.22266 0.93546 1.33014 1.38365 1.42525 1.69517 2.38906 3.13528 3.18279 3.81517 3.89740 4.04747 4.16614 4.37999 4.39852 4.45609 4.57576 4.60021 4.62533 4.65822 4.78806 4.86029 4.95127 4.98347 5.05283 5.14267 5.22596 5.28869 5.36655 5.55882 5.73594 6.33416 6.55599 6.83633 7.42011 8.94624 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.022270 B = 0.011212 C = 0.008509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.019760 B = 2496.746431 C = 3290.012593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.077 3.923 4 C 0.015 3.985 5 H 0.038 0.962 6 C -0.486 4.486 7 H 0.028 0.972 8 C 0.023 3.977 9 N -0.952 5.952 10 Si 0.928 3.072 11 H -0.274 1.274 12 H -0.295 1.295 13 H -0.241 1.241 14 C -0.064 4.064 15 H 0.063 0.937 16 C -0.131 4.131 17 C -0.113 4.113 18 C -0.068 4.068 19 S -0.325 6.325 20 C -0.049 4.049 21 H 0.036 0.964 22 H 0.087 0.913 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.032 0.968 26 H 0.261 0.739 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.121 0.879 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.642 10.853 11.978 16.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C 0.000 4.000 4 C -0.006 4.006 5 H 0.056 0.944 6 C -0.524 4.524 7 H 0.046 0.954 8 C -0.174 4.174 9 N -0.593 5.593 10 Si 0.754 3.246 11 H -0.200 1.200 12 H -0.222 1.222 13 H -0.165 1.165 14 C -0.085 4.085 15 H 0.081 0.919 16 C -0.168 4.168 17 C -0.152 4.152 18 C -0.216 4.216 19 S -0.098 6.098 20 C -0.197 4.197 21 H 0.055 0.945 22 H 0.105 0.895 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.120 0.880 31 H 0.140 0.860 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.710 11.026 11.158 15.919 hybrid contribution -0.511 -1.356 0.604 1.570 sum -3.220 9.670 11.762 15.564 Atomic orbital electron populations 1.22850 0.80813 1.03042 1.00316 1.87962 1.20396 1.29581 1.95310 1.22742 0.95167 0.83467 0.98598 1.19274 0.91639 0.93953 0.95740 0.94426 1.20934 1.35363 1.04133 0.91963 0.95363 1.25743 0.96163 0.97037 0.98433 1.70058 1.44615 1.16805 1.27818 0.86031 0.77918 0.79091 0.81512 1.19987 1.22237 1.16519 1.21200 0.92586 0.96633 0.98053 0.91878 1.21786 1.02847 0.95964 0.96223 1.21689 0.93459 0.96031 1.04029 1.23532 0.98554 1.04160 0.95321 1.86790 1.66775 1.17760 1.38510 1.23327 0.98387 0.93006 1.04960 0.94512 0.89497 0.92368 0.92054 0.94967 0.93013 0.89719 0.91946 0.91171 0.88007 0.86038 0.89292 0.91186 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.06 16 2 O -0.41 -17.76 10.40 -148.98 -1.55 -19.31 16 3 C 0.08 3.00 5.07 71.98 0.37 3.36 16 4 C 0.01 0.64 1.60 -11.54 -0.02 0.62 16 5 H 0.04 1.70 4.71 -2.38 -0.01 1.69 16 6 C -0.49 -27.12 7.25 25.60 0.19 -26.93 16 7 H 0.03 1.78 8.06 -2.91 -0.02 1.75 16 8 C 0.02 1.34 5.47 84.65 0.46 1.80 16 9 N -0.95 -60.57 13.96 21.45 0.30 -60.27 16 10 Si 0.93 45.50 27.00 68.60 1.85 47.36 16 11 H -0.27 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 13 H -0.24 -10.63 6.38 99.48 0.64 -10.00 16 14 C -0.06 -2.36 1.62 -10.90 -0.02 -2.38 16 15 H 0.06 2.45 8.06 -2.39 -0.02 2.43 16 16 C -0.13 -3.54 4.82 30.32 0.15 -3.39 16 17 C -0.11 -2.42 5.75 30.49 0.18 -2.25 16 18 C -0.07 -1.53 6.45 72.02 0.46 -1.07 16 19 S -0.33 -10.71 22.33 -56.49 -1.26 -11.97 16 20 C -0.05 -1.90 5.53 72.01 0.40 -1.50 16 21 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 22 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 23 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.06 1.92 6.04 -2.39 -0.01 1.91 16 25 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 27 H 0.08 2.07 5.81 -2.38 -0.01 2.05 16 28 H 0.06 1.66 8.08 -2.39 -0.02 1.64 16 29 H 0.07 1.60 8.06 -2.39 -0.02 1.58 16 30 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 2.69 7.81 -2.39 -0.02 2.67 16 34 H 0.08 3.92 7.11 -2.39 -0.02 3.91 16 Total: -1.00 -67.84 277.88 3.74 -64.10 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 0.99 Total: 9.76 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: 3.41 Total: -29.68 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: 0.30 Total: -60.27 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -1.55 Total: -19.31 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.85 Total: 47.36 kcal Atomic # 16 Polarization: -10.71 SS G_CDS: -1.26 Total: -11.97 kcal Total: -67.84 3.74 -64.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260209021.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.894 kcal (2) G-P(sol) polarization free energy of solvation -67.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds