Wall clock time and date at job start Mon Mar 30 2020 03:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38386 * 119.92018 * 2 1 4 4 C 1.38342 * 120.30441 * 180.02562 * 3 2 1 5 5 C 1.50694 * 119.92681 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47471 * 20.01560 * 5 4 3 7 7 N 1.46898 * 109.47553 * 140.02163 * 5 4 3 8 8 C 1.50707 * 109.47200 * 260.02155 * 5 4 3 9 9 H 1.08002 * 119.99213 * 359.97438 * 8 5 4 10 10 C 1.37876 * 120.00381 * 179.97438 * 8 5 4 11 11 N 1.31516 * 119.99920 * 0.02562 * 10 8 5 12 12 Si 1.86801 * 120.00243 * 179.97438 * 10 8 5 13 13 H 1.48500 * 109.47094 * 59.99683 * 12 10 8 14 14 H 1.48497 * 109.47348 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.46834 * 300.00232 * 12 10 8 16 16 C 1.37975 * 120.15049 * 0.02562 * 4 3 2 17 17 C 1.39606 * 119.84706 * 359.97438 * 16 4 3 18 18 C 1.43197 * 120.15169 * 179.97438 * 17 16 4 19 19 N 4.80116 * 134.70895 * 180.02562 * 2 1 3 20 20 C 1.37923 * 119.92863 * 180.02562 * 2 1 3 21 21 C 1.50703 * 120.07714 * 359.95396 * 20 2 1 22 22 H 1.08999 * 109.47094 * 90.00347 * 1 2 3 23 23 H 1.09006 * 109.46671 * 210.00306 * 1 2 3 24 24 H 1.08996 * 109.47133 * 330.00152 * 1 2 3 25 25 H 1.07996 * 119.84912 * 359.97438 * 3 2 1 26 26 H 1.00896 * 111.00189 * 59.99859 * 7 5 4 27 27 H 1.00903 * 110.99899 * 183.95168 * 7 5 4 28 28 H 0.96993 * 120.00171 * 179.97438 * 11 10 8 29 29 H 1.08007 * 120.07456 * 179.70086 * 16 4 3 30 30 H 1.09001 * 109.46932 * 89.99488 * 21 20 2 31 31 H 1.08993 * 109.47271 * 210.00402 * 21 20 2 32 32 H 1.09003 * 109.47290 * 330.00449 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1994 0.0000 4 6 3.5806 1.2087 -0.0005 5 6 4.3237 2.5197 0.0001 6 1 3.6630 3.3117 0.3526 7 7 5.4888 2.4219 0.8893 8 6 4.7850 2.8363 -1.3993 9 1 4.5627 2.1559 -2.2080 10 6 5.4908 3.9945 -1.6471 11 7 5.7619 4.8228 -0.6622 12 14 6.0633 4.3866 -3.3815 13 1 4.8859 4.4845 -4.2811 14 1 6.7954 5.6785 -3.3810 15 1 6.9642 3.3079 -3.8610 16 6 4.2816 0.0203 -0.0016 17 6 3.5917 -1.1934 -0.0016 18 6 4.3126 -2.4306 -0.0033 19 7 4.8846 -3.4121 -0.0015 20 6 2.1951 -1.1953 -0.0005 21 6 1.4417 -2.5005 -0.0001 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6535 2.1325 -0.0004 26 1 6.1171 1.6942 0.5835 27 1 5.9672 3.3078 0.9572 28 1 6.2588 5.6374 -0.8364 29 1 5.3617 0.0290 -0.0069 30 1 1.2593 -2.8151 -1.0276 31 1 2.0312 -3.2601 0.5133 32 1 0.4896 -2.3703 0.5144 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260224486.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:05 Heat of formation + Delta-G solvation = 34.351718 kcal Electronic energy + Delta-G solvation = -15226.211961 eV Core-core repulsion = 12764.870792 eV Total energy + Delta-G solvation = -2461.341169 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.52836 -36.29507 -35.27282 -32.71827 -31.97329 -30.67589 -27.80286 -26.28701 -25.54145 -23.19993 -22.20078 -19.32954 -17.47621 -16.59118 -15.86917 -15.37967 -14.73282 -14.34980 -13.85523 -13.35537 -13.21940 -12.97895 -12.78205 -12.64938 -12.58290 -12.53262 -12.01028 -11.66560 -11.46210 -11.37172 -11.02299 -10.88291 -10.72759 -10.55166 -10.05727 -9.71530 -8.73549 -8.31516 -7.97911 -7.27658 -6.16644 -4.34028 1.24222 1.83244 2.95048 3.20047 3.25652 3.27710 3.35587 4.22081 4.24270 4.35879 5.03238 5.05920 5.09280 5.28122 5.38452 5.58968 5.76922 5.80396 5.91589 5.95547 6.01812 6.06462 6.27508 6.51667 6.54681 6.82640 6.89833 6.96367 7.36019 7.60677 7.67113 7.78438 7.99680 8.57624 8.83995 9.02393 9.38389 10.80963 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027054 B = 0.007356 C = 0.006697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.724537 B = 3805.365267 C = 4179.910349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.087 4.087 4 C -0.027 4.027 5 C 0.240 3.760 6 H 0.051 0.949 7 N -0.851 5.851 8 C -0.548 4.548 9 H 0.057 0.943 10 C 0.068 3.932 11 N -0.892 5.892 12 Si 0.897 3.103 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.276 1.276 16 C -0.058 4.058 17 C -0.043 4.043 18 C 0.273 3.727 19 N -0.445 5.445 20 C -0.066 4.066 21 C -0.117 4.117 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.125 0.875 26 H 0.311 0.689 27 H 0.357 0.643 28 H 0.267 0.733 29 H 0.127 0.873 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.596 -6.823 1.158 11.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.094 4.094 3 C -0.106 4.106 4 C -0.027 4.027 5 C 0.130 3.870 6 H 0.069 0.931 7 N -0.381 5.381 8 C -0.588 4.588 9 H 0.075 0.925 10 C -0.135 4.135 11 N -0.531 5.531 12 Si 0.724 3.276 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.202 1.202 16 C -0.079 4.079 17 C -0.046 4.046 18 C -0.042 4.042 19 N -0.121 5.121 20 C -0.068 4.068 21 C -0.173 4.173 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.143 0.857 26 H 0.121 0.879 27 H 0.174 0.826 28 H 0.077 0.923 29 H 0.145 0.855 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.150 -8.327 1.792 11.788 hybrid contribution 0.812 1.034 -1.947 2.349 sum -7.337 -7.293 -0.155 10.346 Atomic orbital electron populations 1.20805 0.91306 1.02559 1.02161 1.19513 0.95725 0.92107 1.02060 1.21169 0.94085 0.97207 0.98175 1.20410 0.93200 0.96503 0.92632 1.18026 0.90012 0.87726 0.91233 0.93097 1.59550 1.12754 1.12196 1.53576 1.21781 1.36015 1.06381 0.94608 0.92470 1.25006 0.95485 0.95544 0.97429 1.69722 1.39914 1.12098 1.31365 0.86570 0.78955 0.77620 0.84405 1.20075 1.21138 1.20181 1.20962 1.00158 0.89914 0.96849 1.15894 0.91491 0.86959 1.10300 1.25819 0.92744 0.92747 0.92856 1.81166 1.09204 1.11447 1.10257 1.19442 0.91223 0.95157 1.01006 1.20856 1.00153 0.94010 1.02316 0.91357 0.91524 0.91537 0.85681 0.87910 0.82617 0.92278 0.85466 0.91151 0.92248 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.60 36.01 0.35 -0.86 16 2 C -0.09 -1.36 5.87 -104.68 -0.61 -1.97 16 3 C -0.09 -1.49 9.31 -39.49 -0.37 -1.85 16 4 C -0.03 -0.53 4.89 -104.68 -0.51 -1.04 16 5 C 0.24 5.55 2.95 -70.02 -0.21 5.34 16 6 H 0.05 1.28 8.00 -51.93 -0.42 0.87 16 7 N -0.85 -19.16 9.01 -6.65 -0.06 -19.22 16 8 C -0.55 -13.91 8.70 -34.44 -0.30 -14.21 16 9 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 10 C 0.07 1.76 5.38 -17.82 -0.10 1.66 16 11 N -0.89 -23.57 11.54 55.43 0.64 -22.93 16 12 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 C -0.06 -1.06 8.99 -39.17 -0.35 -1.42 16 17 C -0.04 -0.71 5.73 -106.93 -0.61 -1.32 16 18 C 0.27 4.58 13.80 -22.47 -0.31 4.27 16 19 N -0.44 -7.94 18.54 41.84 0.78 -7.17 16 20 C -0.07 -0.96 5.91 -104.21 -0.62 -1.58 16 21 C -0.12 -1.35 9.20 36.01 0.33 -1.02 16 22 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.07 0.61 5.94 -51.93 -0.31 0.30 16 24 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 25 H 0.13 2.01 8.03 -52.49 -0.42 1.59 16 26 H 0.31 6.68 7.34 -39.29 -0.29 6.39 16 27 H 0.36 8.68 7.08 -39.29 -0.28 8.40 16 28 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.13 2.35 6.66 -52.48 -0.35 2.00 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.71 7.09 -51.93 -0.37 0.34 16 32 H 0.07 0.71 5.94 -51.93 -0.31 0.40 16 LS Contribution 276.78 15.07 4.17 4.17 Total: -1.00 -26.61 276.78 -6.35 -32.96 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -3.54 Total: 10.93 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -3.31 Total: -14.00 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 1.36 Total: -49.32 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -26.61 -6.35 -32.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260224486.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.309 kcal (2) G-P(sol) polarization free energy of solvation -26.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds