Wall clock time and date at job start Mon Mar 30 2020 03:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38386 * 119.92018 * 2 1 4 4 C 1.38342 * 120.30441 * 180.02562 * 3 2 1 5 5 C 1.50694 * 119.92681 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47471 * 20.01560 * 5 4 3 7 7 N 1.46898 * 109.47553 * 140.02163 * 5 4 3 8 8 C 1.50707 * 109.47200 * 260.02155 * 5 4 3 9 9 H 1.08002 * 119.99213 * 359.97438 * 8 5 4 10 10 C 1.37876 * 120.00381 * 179.97438 * 8 5 4 11 11 N 1.31516 * 119.99920 * 0.02562 * 10 8 5 12 12 Si 1.86801 * 120.00243 * 179.97438 * 10 8 5 13 13 H 1.48500 * 109.47094 * 59.99683 * 12 10 8 14 14 H 1.48497 * 109.47348 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.46834 * 300.00232 * 12 10 8 16 16 C 1.37975 * 120.15049 * 0.02562 * 4 3 2 17 17 C 1.39606 * 119.84706 * 359.97438 * 16 4 3 18 18 C 1.43197 * 120.15169 * 179.97438 * 17 16 4 19 19 N 4.80116 * 134.70895 * 180.02562 * 2 1 3 20 20 C 1.37923 * 119.92863 * 180.02562 * 2 1 3 21 21 C 1.50703 * 120.07714 * 359.95396 * 20 2 1 22 22 H 1.08999 * 109.47094 * 90.00347 * 1 2 3 23 23 H 1.09006 * 109.46671 * 210.00306 * 1 2 3 24 24 H 1.08996 * 109.47133 * 330.00152 * 1 2 3 25 25 H 1.07996 * 119.84912 * 359.97438 * 3 2 1 26 26 H 1.00896 * 111.00189 * 59.99859 * 7 5 4 27 27 H 1.00903 * 110.99899 * 183.95168 * 7 5 4 28 28 H 0.96993 * 120.00171 * 179.97438 * 11 10 8 29 29 H 1.08007 * 120.07456 * 179.70086 * 16 4 3 30 30 H 1.09001 * 109.46932 * 89.99488 * 21 20 2 31 31 H 1.08993 * 109.47271 * 210.00402 * 21 20 2 32 32 H 1.09003 * 109.47290 * 330.00449 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1994 0.0000 4 6 3.5806 1.2087 -0.0005 5 6 4.3237 2.5197 0.0001 6 1 3.6630 3.3117 0.3526 7 7 5.4888 2.4219 0.8893 8 6 4.7850 2.8363 -1.3993 9 1 4.5627 2.1559 -2.2080 10 6 5.4908 3.9945 -1.6471 11 7 5.7619 4.8228 -0.6622 12 14 6.0633 4.3866 -3.3815 13 1 4.8859 4.4845 -4.2811 14 1 6.7954 5.6785 -3.3810 15 1 6.9642 3.3079 -3.8610 16 6 4.2816 0.0203 -0.0016 17 6 3.5917 -1.1934 -0.0016 18 6 4.3126 -2.4306 -0.0033 19 7 4.8846 -3.4121 -0.0015 20 6 2.1951 -1.1953 -0.0005 21 6 1.4417 -2.5005 -0.0001 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6535 2.1325 -0.0004 26 1 6.1171 1.6942 0.5835 27 1 5.9672 3.3078 0.9572 28 1 6.2588 5.6374 -0.8364 29 1 5.3617 0.0290 -0.0069 30 1 1.2593 -2.8151 -1.0276 31 1 2.0312 -3.2601 0.5133 32 1 0.4896 -2.3703 0.5144 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260224486.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:05 Heat of formation + Delta-G solvation = 19.163448 kcal Electronic energy + Delta-G solvation = -15226.870574 eV Core-core repulsion = 12764.870792 eV Total energy + Delta-G solvation = -2461.999782 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.83581 -37.71974 -36.86226 -34.29374 -33.26605 -32.31776 -29.04468 -27.81319 -27.00580 -24.57525 -23.74732 -20.70439 -18.89396 -18.53201 -17.22187 -16.79019 -16.46793 -15.51744 -15.47795 -14.78839 -14.64681 -14.37911 -14.12686 -13.97443 -13.82570 -13.48702 -13.45929 -13.08773 -13.00077 -12.75366 -12.55994 -12.37011 -12.29822 -11.92385 -11.82981 -11.35660 -10.69689 -9.62955 -9.35544 -9.11385 -8.10714 -6.36322 -0.09034 0.54192 1.39278 1.41035 1.48104 1.59992 1.98898 2.37875 2.90968 2.97641 3.07803 3.91298 3.93945 4.13365 4.27448 4.52787 4.62074 4.72797 4.77933 4.83503 4.92967 4.97728 5.06107 5.19347 5.33794 5.43989 5.48656 5.64918 5.67344 5.90817 6.04718 6.14404 6.43742 6.65003 6.93377 7.11211 7.39737 8.83066 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027054 B = 0.007356 C = 0.006697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.724537 B = 3805.365267 C = 4179.910349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.085 4.085 3 C -0.094 4.094 4 C -0.055 4.055 5 C 0.244 3.756 6 H 0.022 0.978 7 N -0.844 5.844 8 C -0.559 4.559 9 H 0.049 0.951 10 C 0.026 3.974 11 N -0.914 5.914 12 Si 0.953 3.047 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.276 1.276 16 C -0.070 4.070 17 C -0.048 4.048 18 C 0.286 3.714 19 N -0.463 5.463 20 C -0.054 4.054 21 C -0.116 4.116 22 H 0.082 0.918 23 H 0.091 0.909 24 H 0.074 0.926 25 H 0.129 0.871 26 H 0.316 0.684 27 H 0.346 0.654 28 H 0.268 0.732 29 H 0.116 0.884 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.438 -8.142 0.634 13.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.085 4.085 3 C -0.113 4.113 4 C -0.055 4.055 5 C 0.133 3.867 6 H 0.040 0.960 7 N -0.373 5.373 8 C -0.598 4.598 9 H 0.067 0.933 10 C -0.175 4.175 11 N -0.554 5.554 12 Si 0.779 3.221 13 H -0.198 1.198 14 H -0.208 1.208 15 H -0.202 1.202 16 C -0.091 4.091 17 C -0.051 4.051 18 C -0.028 4.028 19 N -0.140 5.140 20 C -0.057 4.057 21 C -0.172 4.172 22 H 0.101 0.899 23 H 0.109 0.891 24 H 0.093 0.907 25 H 0.147 0.853 26 H 0.126 0.874 27 H 0.161 0.839 28 H 0.077 0.923 29 H 0.134 0.866 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.000 -9.663 1.269 13.964 hybrid contribution 1.322 1.406 -1.754 2.608 sum -8.678 -8.257 -0.485 11.989 Atomic orbital electron populations 1.20917 0.87989 1.04248 1.03568 1.19883 0.97914 0.90760 0.99912 1.21318 0.93152 0.98758 0.98068 1.20124 0.94323 0.95140 0.95939 1.17838 0.89794 0.89053 0.89976 0.96013 1.59528 1.12697 1.11566 1.53505 1.22034 1.35971 1.06263 0.95580 0.93271 1.25672 0.95733 0.95569 1.00532 1.69818 1.40454 1.12344 1.32772 0.85690 0.78447 0.77311 0.80660 1.19750 1.20797 1.20170 1.20822 0.99749 0.90442 0.98059 1.15914 0.92459 0.85965 1.10801 1.25768 0.92259 0.92474 0.92250 1.81178 1.09619 1.12143 1.11019 1.19881 0.90498 0.96894 0.98418 1.20963 1.00875 0.91758 1.03636 0.89901 0.89080 0.90720 0.85326 0.87372 0.83924 0.92300 0.86557 0.89638 0.92644 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.92 9.60 71.24 0.68 -1.23 16 2 C -0.08 -2.22 5.87 -19.90 -0.12 -2.34 16 3 C -0.09 -3.13 9.31 22.33 0.21 -2.92 16 4 C -0.05 -2.18 4.89 -19.90 -0.10 -2.27 16 5 C 0.24 11.62 2.95 43.42 0.13 11.75 16 6 H 0.02 1.15 8.00 -2.39 -0.02 1.13 16 7 N -0.84 -39.31 9.01 -174.96 -1.58 -40.88 16 8 C -0.56 -28.97 8.70 25.60 0.22 -28.75 16 9 H 0.05 2.57 7.74 -2.91 -0.02 2.55 16 10 C 0.03 1.33 5.38 84.65 0.46 1.78 16 11 N -0.91 -49.23 11.54 21.45 0.25 -48.98 16 12 Si 0.95 41.85 29.54 68.60 2.03 43.87 16 13 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 14 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 15 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 16 C -0.07 -2.58 8.99 22.54 0.20 -2.38 16 17 C -0.05 -1.53 5.73 -21.36 -0.12 -1.65 16 18 C 0.29 9.29 13.80 88.33 1.22 10.51 16 19 N -0.46 -16.05 18.54 19.00 0.35 -15.70 16 20 C -0.05 -1.44 5.91 -19.60 -0.12 -1.55 16 21 C -0.12 -2.21 9.20 71.24 0.66 -1.56 16 22 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.09 1.16 5.94 -2.38 -0.01 1.14 16 24 H 0.07 1.21 8.08 -2.39 -0.02 1.19 16 25 H 0.13 4.10 8.03 -2.91 -0.02 4.08 16 26 H 0.32 14.05 7.34 -89.70 -0.66 13.39 16 27 H 0.35 17.39 7.08 -89.69 -0.63 16.76 16 28 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 29 H 0.12 4.44 6.66 -2.91 -0.02 4.42 16 30 H 0.09 1.45 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.14 7.09 -2.39 -0.02 1.12 16 32 H 0.10 1.40 5.94 -2.39 -0.01 1.39 16 Total: -1.00 -57.50 276.78 4.24 -53.26 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: -0.13 Total: 29.04 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 3.32 Total: -20.62 kcal Atomic # 7 Polarization: -104.59 SS G_CDS: -0.98 Total: -105.56 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Total: -57.50 4.24 -53.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260224486.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.427 kcal (2) G-P(sol) polarization free energy of solvation -57.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds