Wall clock time and date at job start Mon Mar 30 2020 03:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30906 * 125.31397 * 2 1 4 4 C 1.33409 * 109.86514 * 180.11179 * 3 2 1 5 5 C 1.50702 * 126.26369 * 179.87566 * 4 3 2 6 6 H 1.08998 * 109.46654 * 179.68766 * 5 4 3 7 7 C 1.53007 * 109.46801 * 59.69348 * 5 4 3 8 8 C 1.50695 * 109.47380 * 299.69158 * 5 4 3 9 9 H 1.07997 * 120.00269 * 29.10087 * 8 5 4 10 10 C 1.37879 * 119.99697 * 209.09789 * 8 5 4 11 11 N 1.31517 * 120.00016 * 352.54228 * 10 8 5 12 12 Si 1.86800 * 119.99938 * 172.54222 * 10 8 5 13 13 H 1.48505 * 109.47141 * 179.97438 * 12 10 8 14 14 H 1.48491 * 109.47312 * 300.00061 * 12 10 8 15 15 H 1.48507 * 109.47197 * 60.00073 * 12 10 8 16 16 C 1.37988 * 107.46253 * 359.61679 * 4 3 2 17 17 C 1.40967 * 133.70751 * 180.22333 * 16 4 3 18 18 C 1.35874 * 119.17613 * 180.02562 * 17 16 4 19 19 C 1.40816 * 119.77118 * 359.94109 * 18 17 16 20 20 C 1.34666 * 120.61859 * 0.02879 * 19 18 17 21 21 N 1.35035 * 125.31054 * 179.67812 * 2 1 3 22 22 H 1.08996 * 109.47793 * 270.32441 * 1 2 3 23 23 H 1.09006 * 109.46705 * 30.31926 * 1 2 3 24 24 H 1.08997 * 109.47128 * 150.31311 * 1 2 3 25 25 H 1.09001 * 109.46791 * 297.45881 * 7 5 4 26 26 H 1.08999 * 109.47483 * 57.46132 * 7 5 4 27 27 H 1.09000 * 109.46949 * 177.46175 * 7 5 4 28 28 H 0.96996 * 120.00413 * 354.50174 * 11 10 8 29 29 H 1.08001 * 120.41307 * 0.02562 * 17 16 4 30 30 H 1.07999 * 120.11513 * 179.97438 * 18 17 16 31 31 H 1.08004 * 119.68610 * 180.02562 * 19 18 17 32 32 H 1.08005 * 119.71845 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2637 1.0682 0.0000 4 6 3.5496 0.7128 -0.0024 5 6 4.7324 1.6466 -0.0059 6 1 5.6543 1.0650 -0.0018 7 6 4.6844 2.5351 1.2388 8 6 4.6880 2.5090 -1.2409 9 1 3.7389 2.7568 -1.6927 10 6 5.8592 2.9819 -1.7939 11 7 7.0012 2.8055 -1.1658 12 14 5.8239 3.8730 -3.4352 13 1 7.2030 4.2786 -3.8081 14 1 5.2744 2.9693 -4.4775 15 1 4.9663 5.0804 -3.3247 16 6 3.5981 -0.6662 0.0047 17 6 4.6507 -1.6038 0.0101 18 6 4.3562 -2.9302 0.0163 19 6 3.0114 -3.3479 0.0185 20 6 2.0127 -2.4446 0.0139 21 7 2.2875 -1.1019 0.0062 22 1 -0.3634 0.0058 1.0276 23 1 -0.3633 0.8872 -0.5188 24 1 -0.3633 -0.8927 -0.5089 25 1 3.7843 3.1495 1.2120 26 1 4.6710 1.9098 2.1314 27 1 5.5634 3.1792 1.2595 28 1 7.0112 2.4147 -0.2781 29 1 5.6785 -1.2720 0.0094 30 1 5.1508 -3.6617 0.0201 31 1 2.7789 -4.4026 0.0238 32 1 0.9864 -2.7811 0.0161 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260235446.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:26 Heat of formation + Delta-G solvation = 69.838941 kcal Electronic energy + Delta-G solvation = -15665.441607 eV Core-core repulsion = 13205.639280 eV Total energy + Delta-G solvation = -2459.802327 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.23029 -37.07126 -34.84487 -32.73861 -31.02519 -30.28294 -29.41458 -25.84128 -24.61983 -23.30457 -22.22123 -20.84430 -19.57242 -17.08901 -16.37438 -16.03964 -15.48675 -15.31116 -14.21200 -14.02336 -13.63467 -12.95820 -12.91762 -12.65073 -12.34538 -11.91068 -11.64398 -11.32378 -11.10141 -10.99606 -10.69426 -10.61313 -10.08890 -10.00976 -9.68986 -9.44331 -8.74075 -8.46284 -8.26960 -6.72738 -6.26053 -3.95805 1.21093 1.70872 3.07735 3.50387 3.51914 3.61864 3.70997 3.97078 4.61699 4.70438 4.79343 5.05866 5.16494 5.32893 5.41683 5.46391 5.61788 5.65212 5.91190 6.04794 6.13601 6.24436 6.39251 6.61494 6.66618 6.78905 6.99125 7.01490 7.28532 7.41883 7.58282 7.80951 8.27829 8.58263 8.70404 8.96300 9.72087 11.10403 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027629 B = 0.008332 C = 0.007573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.196699 B = 3359.921970 C = 3696.298697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.149 3.851 3 N -0.444 5.444 4 C 0.097 3.903 5 C 0.099 3.901 6 H 0.043 0.957 7 C -0.127 4.127 8 C -0.574 4.574 9 H 0.054 0.946 10 C 0.019 3.981 11 N -0.915 5.915 12 Si 1.065 2.935 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.288 1.288 16 C -0.041 4.041 17 C -0.034 4.034 18 C -0.167 4.167 19 C -0.132 4.132 20 C 0.033 3.967 21 N -0.370 5.370 22 H 0.073 0.927 23 H 0.088 0.912 24 H 0.065 0.935 25 H 0.046 0.954 26 H 0.014 0.986 27 H 0.048 0.952 28 H 0.269 0.731 29 H 0.141 0.859 30 H 0.128 0.872 31 H 0.137 0.863 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.116 -11.508 2.967 14.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.105 4.105 3 N -0.160 5.160 4 C -0.040 4.040 5 C 0.080 3.920 6 H 0.061 0.939 7 C -0.185 4.185 8 C -0.612 4.612 9 H 0.072 0.928 10 C -0.184 4.184 11 N -0.551 5.551 12 Si 0.894 3.106 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.214 1.214 16 C -0.146 4.146 17 C -0.055 4.055 18 C -0.187 4.187 19 C -0.154 4.154 20 C -0.087 4.087 21 N -0.044 5.044 22 H 0.091 0.909 23 H 0.107 0.893 24 H 0.084 0.916 25 H 0.065 0.935 26 H 0.033 0.967 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.159 0.841 30 H 0.146 0.854 31 H 0.155 0.845 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.612 -10.018 1.809 13.334 hybrid contribution -0.797 -1.696 1.103 2.175 sum -9.409 -11.714 2.912 15.304 Atomic orbital electron populations 1.20031 0.85236 1.03428 1.02745 1.23221 0.95426 0.80012 1.11862 1.69945 1.02778 1.26592 1.16661 1.21951 0.93208 0.89241 0.99625 1.17468 0.87960 0.91397 0.95210 0.93868 1.21850 1.00989 0.99389 0.96284 1.21856 0.95421 1.32607 1.11346 0.92788 1.25792 0.92163 0.96575 1.03901 1.70795 1.27162 1.42171 1.14974 0.83607 0.75715 0.76157 0.75158 1.20851 1.21635 1.21422 1.19501 0.83615 0.95426 1.16050 1.20587 0.98138 0.91565 0.95168 1.20801 0.96099 0.95605 1.06240 1.20636 0.92521 0.99067 1.03141 1.21368 1.00440 0.81141 1.05712 1.42632 1.08183 1.05486 1.48109 0.90882 0.89302 0.91606 0.93534 0.96673 0.93342 0.91980 0.84086 0.85423 0.84480 0.82986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.73 10.33 36.00 0.37 -0.36 16 2 C 0.15 2.85 7.96 -155.09 -1.23 1.61 16 3 N -0.44 -10.43 11.20 -6.40 -0.07 -10.50 16 4 C 0.10 2.37 5.70 -82.00 -0.47 1.90 16 5 C 0.10 2.62 2.36 -92.92 -0.22 2.40 16 6 H 0.04 1.17 6.60 -51.93 -0.34 0.83 16 7 C -0.13 -3.12 9.08 37.16 0.34 -2.78 16 8 C -0.57 -16.73 8.29 -34.44 -0.29 -17.01 16 9 H 0.05 1.64 7.82 -52.49 -0.41 1.23 16 10 C 0.02 0.55 5.44 -17.82 -0.10 0.46 16 11 N -0.91 -27.51 13.55 55.43 0.75 -26.76 16 12 Si 1.07 25.97 29.91 -169.99 -5.08 20.88 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 C -0.04 -0.88 6.74 -84.09 -0.57 -1.45 16 17 C -0.03 -0.63 9.96 -39.40 -0.39 -1.02 16 18 C -0.17 -2.42 10.07 -39.45 -0.40 -2.82 16 19 C -0.13 -1.68 9.97 -39.87 -0.40 -2.08 16 20 C 0.03 0.46 10.80 -16.48 -0.18 0.28 16 21 N -0.37 -6.85 2.94 -58.16 -0.17 -7.02 16 22 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.07 0.68 8.04 -51.93 -0.42 0.26 16 25 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 1.21 7.65 -51.93 -0.40 0.81 16 28 H 0.27 7.97 6.37 -40.82 -0.26 7.71 16 29 H 0.14 2.49 7.83 -52.49 -0.41 2.08 16 30 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.14 1.22 8.06 -52.48 -0.42 0.79 16 32 H 0.15 1.51 7.98 -52.48 -0.42 1.09 16 LS Contribution 276.59 15.07 4.17 4.17 Total: -1.00 -33.80 276.59 -7.92 -41.72 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -3.99 Total: -1.63 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -3.53 Total: -20.86 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: 0.51 Total: -44.28 kcal Atomic # 14 Polarization: 25.97 SS G_CDS: -5.08 Total: 20.88 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.80 -7.92 -41.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260235446.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.560 kcal (2) G-P(sol) polarization free energy of solvation -33.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds