Wall clock time and date at job start Mon Mar 30 2020 03:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30906 * 125.31397 * 2 1 4 4 C 1.33409 * 109.86514 * 180.11179 * 3 2 1 5 5 C 1.50702 * 126.26369 * 179.87566 * 4 3 2 6 6 H 1.08998 * 109.46654 * 179.68766 * 5 4 3 7 7 C 1.53007 * 109.46801 * 59.69348 * 5 4 3 8 8 C 1.50695 * 109.47380 * 299.69158 * 5 4 3 9 9 H 1.07997 * 120.00269 * 29.10087 * 8 5 4 10 10 C 1.37879 * 119.99697 * 209.09789 * 8 5 4 11 11 N 1.31517 * 120.00016 * 352.54228 * 10 8 5 12 12 Si 1.86800 * 119.99938 * 172.54222 * 10 8 5 13 13 H 1.48505 * 109.47141 * 179.97438 * 12 10 8 14 14 H 1.48491 * 109.47312 * 300.00061 * 12 10 8 15 15 H 1.48507 * 109.47197 * 60.00073 * 12 10 8 16 16 C 1.37988 * 107.46253 * 359.61679 * 4 3 2 17 17 C 1.40967 * 133.70751 * 180.22333 * 16 4 3 18 18 C 1.35874 * 119.17613 * 180.02562 * 17 16 4 19 19 C 1.40816 * 119.77118 * 359.94109 * 18 17 16 20 20 C 1.34666 * 120.61859 * 0.02879 * 19 18 17 21 21 N 1.35035 * 125.31054 * 179.67812 * 2 1 3 22 22 H 1.08996 * 109.47793 * 270.32441 * 1 2 3 23 23 H 1.09006 * 109.46705 * 30.31926 * 1 2 3 24 24 H 1.08997 * 109.47128 * 150.31311 * 1 2 3 25 25 H 1.09001 * 109.46791 * 297.45881 * 7 5 4 26 26 H 1.08999 * 109.47483 * 57.46132 * 7 5 4 27 27 H 1.09000 * 109.46949 * 177.46175 * 7 5 4 28 28 H 0.96996 * 120.00413 * 354.50174 * 11 10 8 29 29 H 1.08001 * 120.41307 * 0.02562 * 17 16 4 30 30 H 1.07999 * 120.11513 * 179.97438 * 18 17 16 31 31 H 1.08004 * 119.68610 * 180.02562 * 19 18 17 32 32 H 1.08005 * 119.71845 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2637 1.0682 0.0000 4 6 3.5496 0.7128 -0.0024 5 6 4.7324 1.6466 -0.0059 6 1 5.6543 1.0650 -0.0018 7 6 4.6844 2.5351 1.2388 8 6 4.6880 2.5090 -1.2409 9 1 3.7389 2.7568 -1.6927 10 6 5.8592 2.9819 -1.7939 11 7 7.0012 2.8055 -1.1658 12 14 5.8239 3.8730 -3.4352 13 1 7.2030 4.2786 -3.8081 14 1 5.2744 2.9693 -4.4775 15 1 4.9663 5.0804 -3.3247 16 6 3.5981 -0.6662 0.0047 17 6 4.6507 -1.6038 0.0101 18 6 4.3562 -2.9302 0.0163 19 6 3.0114 -3.3479 0.0185 20 6 2.0127 -2.4446 0.0139 21 7 2.2875 -1.1019 0.0062 22 1 -0.3634 0.0058 1.0276 23 1 -0.3633 0.8872 -0.5188 24 1 -0.3633 -0.8927 -0.5089 25 1 3.7843 3.1495 1.2120 26 1 4.6710 1.9098 2.1314 27 1 5.5634 3.1792 1.2595 28 1 7.0112 2.4147 -0.2781 29 1 5.6785 -1.2720 0.0094 30 1 5.1508 -3.6617 0.0201 31 1 2.7789 -4.4026 0.0238 32 1 0.9864 -2.7811 0.0161 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260235446.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:25 Heat of formation + Delta-G solvation = 49.450777 kcal Electronic energy + Delta-G solvation = -15666.325704 eV Core-core repulsion = 13205.639280 eV Total energy + Delta-G solvation = -2460.686424 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.64987 -38.40785 -36.73614 -34.38823 -32.39855 -32.03406 -30.72909 -27.33349 -26.72325 -24.59647 -23.96731 -22.22456 -21.27384 -18.96477 -17.73648 -17.56131 -16.91126 -16.52796 -15.77895 -15.65270 -15.46189 -14.59137 -14.34041 -13.93394 -13.56350 -13.44911 -13.24343 -13.00036 -12.73879 -12.58472 -12.46468 -12.33153 -11.96457 -11.73369 -11.50068 -11.08613 -10.57436 -10.45470 -10.10978 -8.62647 -8.10457 -6.27541 -0.02218 0.39014 1.50037 1.58013 1.78070 1.79059 2.18357 2.53428 2.60218 3.19953 3.54850 3.62738 3.90260 4.03102 4.06528 4.24699 4.41335 4.55826 4.59814 4.69777 4.77629 4.86379 4.96453 5.01043 5.03443 5.22841 5.24572 5.38800 5.53205 5.72515 5.83077 6.11069 6.24539 6.46952 6.66898 7.16478 7.47088 8.78957 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027629 B = 0.008332 C = 0.007573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.196699 B = 3359.921970 C = 3696.298697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C 0.142 3.858 3 N -0.489 5.489 4 C 0.027 3.973 5 C 0.101 3.899 6 H 0.021 0.979 7 C -0.111 4.111 8 C -0.585 4.585 9 H 0.032 0.968 10 C -0.028 4.028 11 N -0.934 5.934 12 Si 1.110 2.890 13 H -0.276 1.276 14 H -0.278 1.278 15 H -0.274 1.274 16 C -0.041 4.041 17 C -0.097 4.097 18 C -0.122 4.122 19 C -0.132 4.132 20 C 0.032 3.968 21 N -0.371 5.371 22 H 0.093 0.907 23 H 0.085 0.915 24 H 0.102 0.898 25 H 0.035 0.965 26 H 0.031 0.969 27 H 0.033 0.967 28 H 0.259 0.741 29 H 0.126 0.874 30 H 0.164 0.836 31 H 0.193 0.807 32 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.182 -14.801 2.570 18.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.114 4.114 3 N -0.205 5.205 4 C -0.108 4.108 5 C 0.081 3.919 6 H 0.040 0.960 7 C -0.169 4.169 8 C -0.624 4.624 9 H 0.050 0.950 10 C -0.226 4.226 11 N -0.571 5.571 12 Si 0.933 3.067 13 H -0.201 1.201 14 H -0.204 1.204 15 H -0.200 1.200 16 C -0.148 4.148 17 C -0.117 4.117 18 C -0.143 4.143 19 C -0.152 4.152 20 C -0.087 4.087 21 N -0.044 5.044 22 H 0.112 0.888 23 H 0.103 0.897 24 H 0.120 0.880 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.144 0.856 30 H 0.182 0.818 31 H 0.210 0.790 32 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -10.688 -13.315 1.432 17.134 hybrid contribution -0.239 -0.959 1.291 1.626 sum -10.927 -14.274 2.722 18.181 Atomic orbital electron populations 1.20258 0.81057 1.05058 1.04557 1.24156 0.97368 0.79295 1.10541 1.69747 1.02972 1.29512 1.18245 1.21452 0.93049 0.90584 1.05726 1.17206 0.88718 0.91463 0.94472 0.96049 1.21639 0.99540 0.98960 0.96779 1.22057 0.94511 1.33212 1.12593 0.94987 1.27165 0.91730 0.96879 1.06830 1.70893 1.27681 1.43599 1.14935 0.83027 0.76271 0.75804 0.71647 1.20140 1.20408 1.19952 1.19635 0.85831 0.94860 1.14489 1.20632 0.97088 0.93139 1.00866 1.21406 0.98542 0.94333 1.00001 1.21322 0.90979 1.01606 1.01311 1.22435 1.03568 0.79010 1.03647 1.42859 1.06773 1.07263 1.47511 0.88804 0.89662 0.87955 0.94579 0.94948 0.94775 0.93033 0.85573 0.81836 0.79017 0.77988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.19 10.33 71.24 0.74 -0.46 16 2 C 0.14 5.30 7.96 138.01 1.10 6.40 16 3 N -0.49 -23.82 11.20 -174.15 -1.95 -25.76 16 4 C 0.03 1.40 5.70 42.26 0.24 1.64 16 5 C 0.10 5.72 2.36 -12.28 -0.03 5.69 16 6 H 0.02 1.26 6.60 -2.39 -0.02 1.25 16 7 C -0.11 -5.83 9.08 71.98 0.65 -5.18 16 8 C -0.59 -36.13 8.29 25.60 0.21 -35.92 16 9 H 0.03 2.06 7.82 -2.91 -0.02 2.03 16 10 C -0.03 -1.71 5.44 84.65 0.46 -1.24 16 11 N -0.93 -58.61 13.55 21.45 0.29 -58.32 16 12 Si 1.11 53.62 29.91 68.60 2.05 55.67 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 14 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 15 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 16 C -0.04 -1.78 6.74 38.76 0.26 -1.52 16 17 C -0.10 -3.56 9.96 22.39 0.22 -3.34 16 18 C -0.12 -3.10 10.07 22.35 0.23 -2.88 16 19 C -0.13 -2.58 9.97 22.08 0.22 -2.36 16 20 C 0.03 0.73 10.80 83.06 0.90 1.62 16 21 N -0.37 -13.04 2.94 -337.92 -0.99 -14.03 16 22 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 24 H 0.10 1.61 8.04 -2.39 -0.02 1.60 16 25 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.03 1.81 7.65 -2.39 -0.02 1.79 16 28 H 0.26 16.33 6.37 -92.71 -0.59 15.74 16 29 H 0.13 4.80 7.83 -2.91 -0.02 4.77 16 30 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 31 H 0.19 1.78 8.06 -2.91 -0.02 1.75 16 32 H 0.20 2.53 7.98 -2.91 -0.02 2.51 16 Total: -1.00 -80.45 276.59 5.88 -74.57 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: 1.28 Total: 5.42 kcal Atomic # 6 Polarization: -42.75 SS G_CDS: 5.20 Total: -37.55 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -2.65 Total: -98.12 kcal Atomic # 14 Polarization: 53.62 SS G_CDS: 2.05 Total: 55.67 kcal Total: -80.45 5.88 -74.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260235446.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.024 kcal (2) G-P(sol) polarization free energy of solvation -80.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds