Wall clock time and date at job start Mon Mar 30 2020 03:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40472 * 119.78640 * 2 1 4 4 C 1.36060 * 119.59304 * 180.02562 * 3 2 1 5 5 C 1.40802 * 119.22395 * 0.02562 * 4 3 2 6 6 C 1.38931 * 132.96323 * 179.97438 * 5 4 3 7 7 C 1.38547 * 107.56568 * 180.02562 * 6 5 4 8 8 C 1.50703 * 125.49279 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47092 * 204.99680 * 8 7 6 10 10 C 1.52994 * 109.47202 * 324.99525 * 8 7 6 11 11 C 1.50705 * 109.47128 * 84.99922 * 8 7 6 12 12 H 1.08000 * 119.99647 * 359.97438 * 11 8 7 13 13 C 1.37877 * 119.99707 * 179.97438 * 11 8 7 14 14 N 1.31509 * 120.00133 * 359.97438 * 13 11 8 15 15 Si 1.86799 * 119.99471 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47470 * 89.99869 * 15 13 11 17 17 H 1.48503 * 109.46838 * 209.99433 * 15 13 11 18 18 H 1.48498 * 109.47230 * 329.99695 * 15 13 11 19 19 N 1.31479 * 109.00900 * 359.97438 * 7 6 5 20 20 N 1.37126 * 119.97151 * 0.02562 * 5 4 3 21 21 C 1.34934 * 119.78376 * 180.02562 * 2 1 3 22 22 H 1.09003 * 109.46718 * 269.97288 * 1 2 3 23 23 H 1.08998 * 109.47067 * 29.97413 * 1 2 3 24 24 H 1.08996 * 109.47286 * 149.97768 * 1 2 3 25 25 H 1.07997 * 120.19942 * 0.05149 * 3 2 1 26 26 H 1.07992 * 120.39118 * 180.02562 * 4 3 2 27 27 H 1.08001 * 126.21620 * 0.02562 * 6 5 4 28 28 H 1.09003 * 109.46821 * 179.97438 * 10 8 7 29 29 H 1.09002 * 109.47409 * 300.00347 * 10 8 7 30 30 H 1.09008 * 109.47330 * 60.00313 * 10 8 7 31 31 H 0.97003 * 120.00029 * 180.02562 * 14 13 11 32 32 H 1.08004 * 119.66904 * 359.69697 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2048 1.2191 0.0000 4 6 3.5654 1.2145 -0.0005 5 6 4.2487 -0.0166 -0.0016 6 6 5.5971 -0.3511 -0.0028 7 6 5.6849 -1.7338 -0.0041 8 6 6.9649 -2.5293 -0.0051 9 1 6.7818 -3.5117 -0.4402 10 6 8.0215 -1.7942 -0.8321 11 6 7.4573 -2.6905 1.4101 12 1 6.8993 -2.2597 2.2283 13 6 8.6200 -3.3881 1.6601 14 7 9.2990 -3.9131 0.6638 15 14 9.2298 -3.5885 3.4144 16 1 8.6548 -4.8261 4.0000 17 1 10.7119 -3.6827 3.4154 18 1 8.8077 -2.4162 4.2222 19 7 4.4715 -2.2399 -0.0032 20 7 3.5425 -1.1920 -0.0027 21 6 2.1773 -1.1711 -0.0005 22 1 -0.3633 -0.0005 1.0277 23 1 -0.3633 0.8902 -0.5134 24 1 -0.3633 -0.8897 -0.5142 25 1 1.6646 2.1543 0.0008 26 1 4.1149 2.1442 -0.0001 27 1 6.4263 0.3410 -0.0028 28 1 8.9475 -2.3694 -0.8324 29 1 7.6654 -1.6775 -1.8557 30 1 8.2048 -0.8117 -0.3970 31 1 10.1169 -4.4042 0.8398 32 1 1.6283 -2.1012 0.0040 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260270411.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:52 Heat of formation + Delta-G solvation = 89.740165 kcal Electronic energy + Delta-G solvation = -15238.048927 eV Core-core repulsion = 12779.109582 eV Total energy + Delta-G solvation = -2458.939345 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.40216 -37.43043 -34.34295 -32.53650 -31.93452 -29.91444 -28.40960 -25.85360 -25.14101 -23.18337 -21.99510 -21.45431 -18.73283 -17.00836 -16.24751 -16.12140 -15.02617 -14.96012 -14.59197 -14.16561 -13.44628 -13.38005 -12.77123 -12.46147 -12.43801 -11.79171 -11.51946 -11.37415 -11.05130 -10.90428 -10.67260 -10.42016 -10.23992 -9.99854 -9.88758 -9.62266 -9.10724 -8.38011 -8.30832 -7.01233 -6.01008 -4.07161 1.11393 1.53627 2.85362 3.32559 3.37983 3.41119 3.52037 3.79625 4.45951 4.61450 4.81444 5.02278 5.08481 5.23052 5.31330 5.46778 5.49107 5.74508 5.84600 6.04815 6.15185 6.35426 6.49605 6.57021 6.76642 6.87594 7.00920 7.13846 7.39399 7.51242 7.68328 7.85052 8.07315 8.34001 8.46139 8.93291 9.56502 11.05240 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043812 B = 0.006019 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.944199 B = 4650.890896 C = 4797.888952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.159 4.159 3 C -0.094 4.094 4 C -0.109 4.109 5 C 0.078 3.922 6 C -0.269 4.269 7 C 0.156 3.844 8 C 0.109 3.891 9 H 0.045 0.955 10 C -0.130 4.130 11 C -0.503 4.503 12 H 0.056 0.944 13 C 0.064 3.936 14 N -0.890 5.890 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.274 1.274 19 N -0.328 5.328 20 N -0.286 5.286 21 C 0.119 3.881 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.131 0.869 26 H 0.140 0.860 27 H 0.150 0.850 28 H 0.090 0.910 29 H 0.011 0.989 30 H 0.033 0.967 31 H 0.262 0.738 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.327 9.460 -2.086 16.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.163 4.163 3 C -0.117 4.117 4 C -0.128 4.128 5 C -0.039 4.039 6 C -0.297 4.297 7 C -0.001 4.001 8 C 0.089 3.911 9 H 0.063 0.937 10 C -0.189 4.189 11 C -0.542 4.542 12 H 0.074 0.926 13 C -0.138 4.138 14 N -0.528 5.528 15 Si 0.725 3.275 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.199 1.199 19 N -0.151 5.151 20 N -0.052 5.052 21 C -0.008 4.008 22 H 0.086 0.914 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.149 0.851 26 H 0.158 0.842 27 H 0.167 0.833 28 H 0.109 0.891 29 H 0.030 0.970 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.753 8.162 -2.127 16.134 hybrid contribution 0.780 0.636 1.008 1.425 sum -12.973 8.799 -1.119 15.715 Atomic orbital electron populations 1.20542 0.89497 1.02788 1.02270 1.19261 0.96773 0.91727 1.08557 1.20880 0.93697 0.97530 0.99584 1.20519 0.94046 0.95709 1.02570 1.19621 0.92978 0.87329 1.03961 1.21338 0.93126 0.96044 1.19226 1.23331 0.94275 0.93463 0.89042 1.17486 0.83256 0.93205 0.97202 0.93729 1.21771 1.02230 0.99691 0.95173 1.20914 1.07880 1.34347 0.91033 0.92575 1.24903 0.96391 0.95196 0.97281 1.69879 1.16731 1.35744 1.30474 0.86501 0.77779 0.78567 0.84639 1.20644 1.21093 1.19891 1.77995 0.97757 1.06205 1.33179 1.46403 1.04967 1.06507 1.47304 1.21151 0.80188 0.99808 0.99620 0.91366 0.91324 0.91614 0.85074 0.84216 0.83271 0.89142 0.96967 0.94792 0.92812 0.82452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 10.00 36.01 0.36 -0.40 16 2 C -0.16 -1.94 5.84 -104.95 -0.61 -2.56 16 3 C -0.09 -1.13 9.74 -39.52 -0.38 -1.52 16 4 C -0.11 -1.57 10.11 -39.40 -0.40 -1.97 16 5 C 0.08 1.50 6.81 -84.27 -0.57 0.92 16 6 C -0.27 -5.77 10.06 -39.21 -0.39 -6.17 16 7 C 0.16 3.81 6.01 -82.63 -0.50 3.32 16 8 C 0.11 2.89 2.75 -92.92 -0.26 2.64 16 9 H 0.04 1.28 8.14 -51.93 -0.42 0.86 16 10 C -0.13 -3.18 8.55 37.15 0.32 -2.86 16 11 C -0.50 -14.27 8.55 -34.44 -0.29 -14.57 16 12 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 13 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 14 N -0.89 -25.39 11.32 55.43 0.63 -24.76 16 15 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 19 N -0.33 -7.84 12.66 33.51 0.42 -7.41 16 20 N -0.29 -5.72 3.90 -10.70 -0.04 -5.76 16 21 C 0.12 1.82 10.80 -16.63 -0.18 1.64 16 22 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 24 H 0.06 0.48 8.07 -51.93 -0.42 0.06 16 25 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 26 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 27 H 0.15 2.95 7.37 -52.49 -0.39 2.57 16 28 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 29 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.03 0.78 7.25 -51.92 -0.38 0.40 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.16 2.03 8.06 -52.48 -0.42 1.61 16 LS Contribution 274.76 15.07 4.14 4.14 Total: -1.00 -31.60 274.76 -6.87 -38.47 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -4.00 Total: -1.43 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -3.01 Total: -19.84 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 1.01 Total: -37.94 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.60 -6.87 -38.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260270411.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.215 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds