Wall clock time and date at job start Mon Mar 30 2020 03:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40472 * 119.78640 * 2 1 4 4 C 1.36060 * 119.59304 * 180.02562 * 3 2 1 5 5 C 1.40802 * 119.22395 * 0.02562 * 4 3 2 6 6 C 1.38931 * 132.96323 * 179.97438 * 5 4 3 7 7 C 1.38547 * 107.56568 * 180.02562 * 6 5 4 8 8 C 1.50703 * 125.49279 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47092 * 204.99680 * 8 7 6 10 10 C 1.52994 * 109.47202 * 324.99525 * 8 7 6 11 11 C 1.50705 * 109.47128 * 84.99922 * 8 7 6 12 12 H 1.08000 * 119.99647 * 359.97438 * 11 8 7 13 13 C 1.37877 * 119.99707 * 179.97438 * 11 8 7 14 14 N 1.31509 * 120.00133 * 359.97438 * 13 11 8 15 15 Si 1.86799 * 119.99471 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47470 * 89.99869 * 15 13 11 17 17 H 1.48503 * 109.46838 * 209.99433 * 15 13 11 18 18 H 1.48498 * 109.47230 * 329.99695 * 15 13 11 19 19 N 1.31479 * 109.00900 * 359.97438 * 7 6 5 20 20 N 1.37126 * 119.97151 * 0.02562 * 5 4 3 21 21 C 1.34934 * 119.78376 * 180.02562 * 2 1 3 22 22 H 1.09003 * 109.46718 * 269.97288 * 1 2 3 23 23 H 1.08998 * 109.47067 * 29.97413 * 1 2 3 24 24 H 1.08996 * 109.47286 * 149.97768 * 1 2 3 25 25 H 1.07997 * 120.19942 * 0.05149 * 3 2 1 26 26 H 1.07992 * 120.39118 * 180.02562 * 4 3 2 27 27 H 1.08001 * 126.21620 * 0.02562 * 6 5 4 28 28 H 1.09003 * 109.46821 * 179.97438 * 10 8 7 29 29 H 1.09002 * 109.47409 * 300.00347 * 10 8 7 30 30 H 1.09008 * 109.47330 * 60.00313 * 10 8 7 31 31 H 0.97003 * 120.00029 * 180.02562 * 14 13 11 32 32 H 1.08004 * 119.66904 * 359.69697 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2048 1.2191 0.0000 4 6 3.5654 1.2145 -0.0005 5 6 4.2487 -0.0166 -0.0016 6 6 5.5971 -0.3511 -0.0028 7 6 5.6849 -1.7338 -0.0041 8 6 6.9649 -2.5293 -0.0051 9 1 6.7818 -3.5117 -0.4402 10 6 8.0215 -1.7942 -0.8321 11 6 7.4573 -2.6905 1.4101 12 1 6.8993 -2.2597 2.2283 13 6 8.6200 -3.3881 1.6601 14 7 9.2990 -3.9131 0.6638 15 14 9.2298 -3.5885 3.4144 16 1 8.6548 -4.8261 4.0000 17 1 10.7119 -3.6827 3.4154 18 1 8.8077 -2.4162 4.2222 19 7 4.4715 -2.2399 -0.0032 20 7 3.5425 -1.1920 -0.0027 21 6 2.1773 -1.1711 -0.0005 22 1 -0.3633 -0.0005 1.0277 23 1 -0.3633 0.8902 -0.5134 24 1 -0.3633 -0.8897 -0.5142 25 1 1.6646 2.1543 0.0008 26 1 4.1149 2.1442 -0.0001 27 1 6.4263 0.3410 -0.0028 28 1 8.9475 -2.3694 -0.8324 29 1 7.6654 -1.6775 -1.8557 30 1 8.2048 -0.8117 -0.3970 31 1 10.1169 -4.4042 0.8398 32 1 1.6283 -2.1012 0.0040 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260270411.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:52 Heat of formation + Delta-G solvation = 70.730522 kcal Electronic energy + Delta-G solvation = -15238.873247 eV Core-core repulsion = 12779.109582 eV Total energy + Delta-G solvation = -2459.763665 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.83735 -38.76631 -36.23267 -33.86914 -33.49113 -31.65149 -29.74795 -27.27410 -27.06535 -24.44191 -23.75231 -22.76108 -20.46762 -18.46295 -18.22214 -17.44789 -16.67297 -16.46237 -15.89633 -15.53326 -14.95781 -14.81863 -14.15329 -13.91161 -13.54706 -13.20730 -13.09165 -12.85988 -12.73852 -12.51385 -12.33758 -12.13568 -12.06242 -11.81484 -11.45681 -11.34417 -10.99823 -10.51053 -9.87861 -8.41962 -8.14160 -6.29828 -0.05800 0.23643 1.39781 1.40936 1.49280 1.52869 1.89019 2.43024 2.51861 3.11848 3.39379 3.75435 3.92227 3.98526 4.12932 4.49263 4.63314 4.70759 4.81436 4.88544 4.91128 4.92659 5.06743 5.11618 5.25114 5.27677 5.35922 5.49183 5.61382 5.75544 5.78759 5.99237 6.14392 6.24827 6.73700 6.82657 7.37196 8.90826 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043812 B = 0.006019 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.944199 B = 4650.890896 C = 4797.888952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.124 4.124 3 C -0.070 4.070 4 C -0.122 4.122 5 C 0.082 3.918 6 C -0.306 4.306 7 C 0.127 3.873 8 C 0.110 3.890 9 H 0.003 0.997 10 C -0.114 4.114 11 C -0.524 4.524 12 H 0.040 0.960 13 C 0.019 3.981 14 N -0.913 5.913 15 Si 0.963 3.037 16 H -0.277 1.277 17 H -0.272 1.272 18 H -0.271 1.271 19 N -0.380 5.380 20 N -0.287 5.287 21 C 0.071 3.929 22 H 0.085 0.915 23 H 0.096 0.904 24 H 0.075 0.925 25 H 0.185 0.815 26 H 0.171 0.829 27 H 0.154 0.846 28 H 0.068 0.932 29 H 0.025 0.975 30 H 0.042 0.958 31 H 0.266 0.734 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.093 12.162 -1.428 20.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.093 4.093 4 C -0.142 4.142 5 C -0.037 4.037 6 C -0.335 4.335 7 C -0.028 4.028 8 C 0.089 3.911 9 H 0.021 0.979 10 C -0.173 4.173 11 C -0.562 4.562 12 H 0.059 0.941 13 C -0.180 4.180 14 N -0.552 5.552 15 Si 0.788 3.212 16 H -0.203 1.203 17 H -0.197 1.197 18 H -0.196 1.196 19 N -0.205 5.205 20 N -0.052 5.052 21 C -0.054 4.054 22 H 0.104 0.896 23 H 0.115 0.885 24 H 0.094 0.906 25 H 0.202 0.798 26 H 0.188 0.812 27 H 0.172 0.828 28 H 0.087 0.913 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -16.524 10.855 -1.479 19.825 hybrid contribution 1.279 -0.066 0.764 1.491 sum -15.244 10.789 -0.715 18.690 Atomic orbital electron populations 1.20735 0.85746 1.04777 1.03908 1.19993 0.99125 0.90598 1.03080 1.21576 0.92839 0.99448 0.95410 1.20977 0.95383 0.94753 1.03060 1.20121 0.92326 0.88800 1.02464 1.21338 0.94855 0.94823 1.22503 1.22911 0.93684 0.94671 0.91560 1.17258 0.85441 0.91961 0.96406 0.97881 1.21558 1.00583 0.99336 0.95793 1.21069 1.08426 1.35137 0.91617 0.94121 1.25696 0.96279 0.94565 1.01460 1.69995 1.16975 1.35827 1.32376 0.85487 0.77727 0.78445 0.79575 1.20295 1.19685 1.19558 1.77781 0.98355 1.08458 1.35946 1.46523 1.06198 1.05953 1.46573 1.21867 0.78581 1.02286 1.02679 0.89649 0.88520 0.90604 0.79806 0.81155 0.82822 0.91277 0.95560 0.93910 0.92432 0.81072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.98 10.00 71.24 0.71 -0.27 16 2 C -0.12 -2.47 5.84 -20.08 -0.12 -2.59 16 3 C -0.07 -1.29 9.74 22.31 0.22 -1.07 16 4 C -0.12 -3.11 10.11 22.39 0.23 -2.89 16 5 C 0.08 3.12 6.81 39.11 0.27 3.38 16 6 C -0.31 -13.72 10.06 22.51 0.23 -13.50 16 7 C 0.13 6.59 6.01 42.69 0.26 6.85 16 8 C 0.11 6.26 2.75 -12.29 -0.03 6.22 16 9 H 0.00 0.19 8.14 -2.39 -0.02 0.18 16 10 C -0.11 -5.91 8.55 71.98 0.62 -5.29 16 11 C -0.52 -31.39 8.55 25.60 0.22 -31.17 16 12 H 0.04 2.49 7.74 -2.91 -0.02 2.47 16 13 C 0.02 1.12 5.30 84.66 0.45 1.56 16 14 N -0.91 -53.98 11.32 21.45 0.24 -53.74 16 15 Si 0.96 45.32 29.54 68.60 2.03 47.35 16 16 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 19 N -0.38 -19.26 12.66 -47.88 -0.61 -19.87 16 20 N -0.29 -11.60 3.90 -187.78 -0.73 -12.34 16 21 C 0.07 2.05 10.80 83.20 0.90 2.95 16 22 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.10 0.58 8.09 -2.39 -0.02 0.56 16 24 H 0.08 0.72 8.07 -2.39 -0.02 0.70 16 25 H 0.18 1.61 8.06 -2.91 -0.02 1.58 16 26 H 0.17 3.25 8.06 -2.91 -0.02 3.22 16 27 H 0.15 6.37 7.37 -2.91 -0.02 6.35 16 28 H 0.07 3.83 6.07 -2.39 -0.01 3.81 16 29 H 0.03 1.21 8.14 -2.39 -0.02 1.20 16 30 H 0.04 2.06 7.25 -2.38 -0.02 2.04 16 31 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 32 H 0.17 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -74.68 274.76 5.97 -68.71 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: 1.11 Total: 5.68 kcal Atomic # 6 Polarization: -39.74 SS G_CDS: 3.94 Total: -35.80 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -1.10 Total: -85.94 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -74.68 5.97 -68.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260270411.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.438 kcal (2) G-P(sol) polarization free energy of solvation -74.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds