Wall clock time and date at job start Mon Mar 30 2020 03:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40464 * 119.78496 * 2 1 4 4 C 1.36068 * 119.58815 * 180.02562 * 3 2 1 5 5 C 1.40789 * 119.22892 * 0.02562 * 4 3 2 6 6 C 1.38933 * 132.96781 * 180.33959 * 5 4 3 7 7 C 1.38541 * 107.56730 * 180.13024 * 6 5 4 8 8 C 1.50708 * 125.49301 * 179.83285 * 7 6 5 9 9 H 1.09002 * 109.46828 * 154.71841 * 8 7 6 10 10 C 1.52997 * 109.47141 * 34.71972 * 8 7 6 11 11 C 1.50697 * 109.47025 * 274.71599 * 8 7 6 12 12 H 1.07999 * 120.00055 * 0.02562 * 11 8 7 13 13 C 1.37878 * 119.99687 * 180.02562 * 11 8 7 14 14 N 1.31511 * 120.00458 * 359.97438 * 13 11 8 15 15 Si 1.86805 * 119.99926 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.46980 * 89.99582 * 15 13 11 17 17 H 1.48493 * 109.47135 * 209.99651 * 15 13 11 18 18 H 1.48498 * 109.47274 * 330.00048 * 15 13 11 19 19 N 1.31481 * 109.01014 * 359.57070 * 7 6 5 20 20 N 1.37135 * 119.97108 * 0.02562 * 5 4 3 21 21 C 1.34940 * 119.78259 * 180.02562 * 2 1 3 22 22 H 1.09007 * 109.47106 * 269.97665 * 1 2 3 23 23 H 1.09001 * 109.47423 * 29.97427 * 1 2 3 24 24 H 1.09004 * 109.47193 * 149.97973 * 1 2 3 25 25 H 1.08001 * 120.21137 * 0.02562 * 3 2 1 26 26 H 1.08008 * 120.38226 * 179.97438 * 4 3 2 27 27 H 1.07999 * 126.21194 * 359.95909 * 6 5 4 28 28 H 1.09002 * 109.47153 * 299.99670 * 10 8 7 29 29 H 1.09001 * 109.46832 * 179.97438 * 10 8 7 30 30 H 1.09004 * 109.47261 * 59.99842 * 10 8 7 31 31 H 0.96999 * 120.00480 * 179.97438 * 14 13 11 32 32 H 1.08001 * 119.66742 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2047 1.2191 0.0000 4 6 3.5654 1.2144 -0.0005 5 6 4.2487 -0.0166 -0.0016 6 6 5.5971 -0.3512 0.0037 7 6 5.6848 -1.7338 -0.0038 8 6 6.9649 -2.5293 -0.0051 9 1 6.7818 -3.5128 0.4278 10 6 8.0219 -1.7961 0.8231 11 6 7.4566 -2.6874 -1.4208 12 1 6.8983 -2.2547 -2.2378 13 6 8.6192 -3.3844 -1.6730 14 7 9.2993 -3.9109 -0.6781 15 14 9.2292 -3.5797 -3.4278 16 1 10.1275 -2.4474 -3.7685 17 1 9.9744 -4.8580 -3.5534 18 1 8.0705 -3.5889 -4.3565 19 7 4.4714 -2.2400 -0.0039 20 7 3.5424 -1.1921 -0.0027 21 6 2.1772 -1.1712 -0.0005 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3634 0.8902 -0.5134 24 1 -0.3634 -0.8898 -0.5142 25 1 1.6647 2.1544 0.0004 26 1 4.1149 2.1443 -0.0010 27 1 6.4262 0.3409 0.0095 28 1 8.2049 -0.8127 0.3901 29 1 8.9475 -2.3718 0.8225 30 1 7.6661 -1.6818 1.8471 31 1 10.1170 -4.4015 -0.8555 32 1 1.6283 -2.1012 -0.0014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260270426.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:54 Heat of formation + Delta-G solvation = 89.740691 kcal Electronic energy + Delta-G solvation = -15237.937379 eV Core-core repulsion = 12778.998056 eV Total energy + Delta-G solvation = -2458.939323 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.40254 -37.43070 -34.34315 -32.53681 -31.93461 -29.91431 -28.40966 -25.85310 -25.14168 -23.18374 -21.99501 -21.45457 -18.73336 -17.00897 -16.24446 -16.12322 -15.03314 -14.95407 -14.59275 -14.16478 -13.43075 -13.39561 -12.77706 -12.46244 -12.43812 -11.78349 -11.52274 -11.37103 -11.05553 -10.90815 -10.65811 -10.42263 -10.24221 -10.00043 -9.88902 -9.62638 -9.10456 -8.37562 -8.31253 -7.01274 -6.00951 -4.07151 1.11340 1.53587 2.85317 3.32250 3.37913 3.41561 3.52101 3.79596 4.45974 4.61443 4.81462 5.02275 5.08491 5.23101 5.31323 5.46644 5.48987 5.74479 5.84590 6.04807 6.15142 6.35385 6.49517 6.56965 6.76614 6.87594 7.00886 7.13830 7.39361 7.51208 7.68372 7.84998 8.07390 8.34047 8.46145 8.93311 9.56524 11.05262 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043814 B = 0.006018 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.911318 B = 4651.512194 C = 4798.203498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.159 4.159 3 C -0.094 4.094 4 C -0.109 4.109 5 C 0.078 3.922 6 C -0.269 4.269 7 C 0.156 3.844 8 C 0.109 3.891 9 H 0.045 0.955 10 C -0.130 4.130 11 C -0.503 4.503 12 H 0.056 0.944 13 C 0.064 3.936 14 N -0.890 5.890 15 Si 0.898 3.102 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.275 1.275 19 N -0.328 5.328 20 N -0.286 5.286 21 C 0.119 3.881 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.131 0.869 26 H 0.140 0.860 27 H 0.150 0.850 28 H 0.033 0.967 29 H 0.090 0.910 30 H 0.011 0.989 31 H 0.262 0.738 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.329 9.448 2.132 16.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.163 4.163 3 C -0.117 4.117 4 C -0.129 4.129 5 C -0.039 4.039 6 C -0.298 4.298 7 C -0.001 4.001 8 C 0.089 3.911 9 H 0.063 0.937 10 C -0.189 4.189 11 C -0.542 4.542 12 H 0.074 0.926 13 C -0.138 4.138 14 N -0.528 5.528 15 Si 0.725 3.275 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.200 1.200 19 N -0.151 5.151 20 N -0.052 5.052 21 C -0.008 4.008 22 H 0.086 0.914 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.149 0.851 26 H 0.158 0.842 27 H 0.167 0.833 28 H 0.052 0.948 29 H 0.109 0.891 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.759 8.144 2.167 16.135 hybrid contribution 0.790 0.656 -0.994 1.429 sum -12.969 8.800 1.173 15.717 Atomic orbital electron populations 1.20543 0.89497 1.02831 1.02227 1.19260 0.96774 0.91726 1.08560 1.20882 0.93696 0.97531 0.99576 1.20521 0.94047 0.95710 1.02580 1.19620 0.92978 0.87326 1.03950 1.21337 0.93127 0.96042 1.19260 1.23329 0.94277 0.93464 0.89027 1.17487 0.83252 0.93215 0.97192 0.93720 1.21773 1.02235 0.99697 0.95166 1.20912 1.07893 1.34317 0.91052 0.92575 1.24904 0.96405 0.95169 0.97289 1.69877 1.16642 1.35775 1.30538 0.86500 0.78819 0.77498 0.84661 1.20551 1.21121 1.19965 1.77996 0.97757 1.06205 1.33183 1.46404 1.04970 1.06511 1.47286 1.21152 0.80189 0.99809 0.99614 0.91388 0.91312 0.91604 0.85072 0.84214 0.83274 0.94792 0.89140 0.96973 0.92810 0.82450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 10.00 36.00 0.36 -0.40 16 2 C -0.16 -1.94 5.84 -104.96 -0.61 -2.56 16 3 C -0.09 -1.13 9.74 -39.52 -0.38 -1.52 16 4 C -0.11 -1.57 10.11 -39.40 -0.40 -1.97 16 5 C 0.08 1.50 6.81 -84.27 -0.57 0.92 16 6 C -0.27 -5.78 10.05 -39.21 -0.39 -6.17 16 7 C 0.16 3.82 6.02 -82.63 -0.50 3.32 16 8 C 0.11 2.89 2.76 -92.92 -0.26 2.64 16 9 H 0.04 1.28 8.14 -51.93 -0.42 0.86 16 10 C -0.13 -3.18 8.54 37.16 0.32 -2.87 16 11 C -0.50 -14.27 8.55 -34.44 -0.29 -14.57 16 12 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 13 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 14 N -0.89 -25.39 11.32 55.43 0.63 -24.76 16 15 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 N -0.33 -7.84 12.66 33.51 0.42 -7.42 16 20 N -0.29 -5.72 3.90 -10.71 -0.04 -5.76 16 21 C 0.12 1.82 10.80 -16.63 -0.18 1.64 16 22 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 24 H 0.06 0.48 8.07 -51.93 -0.42 0.06 16 25 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 26 H 0.14 1.63 8.06 -52.48 -0.42 1.20 16 27 H 0.15 2.95 7.37 -52.49 -0.39 2.56 16 28 H 0.03 0.78 7.25 -51.93 -0.38 0.40 16 29 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 30 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.16 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 274.75 15.07 4.14 4.14 Total: -1.00 -31.61 274.75 -6.88 -38.49 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -4.00 Total: -1.44 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -3.01 Total: -19.84 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 1.01 Total: -37.94 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.61 -6.88 -38.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260270426.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.227 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds