Wall clock time and date at job start Mon Mar 30 2020 03:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40464 * 119.78496 * 2 1 4 4 C 1.36068 * 119.58815 * 180.02562 * 3 2 1 5 5 C 1.40789 * 119.22892 * 0.02562 * 4 3 2 6 6 C 1.38933 * 132.96781 * 180.33959 * 5 4 3 7 7 C 1.38541 * 107.56730 * 180.13024 * 6 5 4 8 8 C 1.50708 * 125.49301 * 179.83285 * 7 6 5 9 9 H 1.09002 * 109.46828 * 154.71841 * 8 7 6 10 10 C 1.52997 * 109.47141 * 34.71972 * 8 7 6 11 11 C 1.50697 * 109.47025 * 274.71599 * 8 7 6 12 12 H 1.07999 * 120.00055 * 0.02562 * 11 8 7 13 13 C 1.37878 * 119.99687 * 180.02562 * 11 8 7 14 14 N 1.31511 * 120.00458 * 359.97438 * 13 11 8 15 15 Si 1.86805 * 119.99926 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.46980 * 89.99582 * 15 13 11 17 17 H 1.48493 * 109.47135 * 209.99651 * 15 13 11 18 18 H 1.48498 * 109.47274 * 330.00048 * 15 13 11 19 19 N 1.31481 * 109.01014 * 359.57070 * 7 6 5 20 20 N 1.37135 * 119.97108 * 0.02562 * 5 4 3 21 21 C 1.34940 * 119.78259 * 180.02562 * 2 1 3 22 22 H 1.09007 * 109.47106 * 269.97665 * 1 2 3 23 23 H 1.09001 * 109.47423 * 29.97427 * 1 2 3 24 24 H 1.09004 * 109.47193 * 149.97973 * 1 2 3 25 25 H 1.08001 * 120.21137 * 0.02562 * 3 2 1 26 26 H 1.08008 * 120.38226 * 179.97438 * 4 3 2 27 27 H 1.07999 * 126.21194 * 359.95909 * 6 5 4 28 28 H 1.09002 * 109.47153 * 299.99670 * 10 8 7 29 29 H 1.09001 * 109.46832 * 179.97438 * 10 8 7 30 30 H 1.09004 * 109.47261 * 59.99842 * 10 8 7 31 31 H 0.96999 * 120.00480 * 179.97438 * 14 13 11 32 32 H 1.08001 * 119.66742 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2047 1.2191 0.0000 4 6 3.5654 1.2144 -0.0005 5 6 4.2487 -0.0166 -0.0016 6 6 5.5971 -0.3512 0.0037 7 6 5.6848 -1.7338 -0.0038 8 6 6.9649 -2.5293 -0.0051 9 1 6.7818 -3.5128 0.4278 10 6 8.0219 -1.7961 0.8231 11 6 7.4566 -2.6874 -1.4208 12 1 6.8983 -2.2547 -2.2378 13 6 8.6192 -3.3844 -1.6730 14 7 9.2993 -3.9109 -0.6781 15 14 9.2292 -3.5797 -3.4278 16 1 10.1275 -2.4474 -3.7685 17 1 9.9744 -4.8580 -3.5534 18 1 8.0705 -3.5889 -4.3565 19 7 4.4714 -2.2400 -0.0039 20 7 3.5424 -1.1921 -0.0027 21 6 2.1772 -1.1712 -0.0005 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3634 0.8902 -0.5134 24 1 -0.3634 -0.8898 -0.5142 25 1 1.6647 2.1544 0.0004 26 1 4.1149 2.1443 -0.0010 27 1 6.4262 0.3409 0.0095 28 1 8.2049 -0.8127 0.3901 29 1 8.9475 -2.3718 0.8225 30 1 7.6661 -1.6818 1.8471 31 1 10.1170 -4.4015 -0.8555 32 1 1.6283 -2.1012 -0.0014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260270426.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:53 Heat of formation + Delta-G solvation = 70.715396 kcal Electronic energy + Delta-G solvation = -15238.762378 eV Core-core repulsion = 12778.998056 eV Total energy + Delta-G solvation = -2459.764321 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.83759 -38.76664 -36.23300 -33.86965 -33.49120 -31.65166 -29.74787 -27.27462 -27.06510 -24.44234 -23.75241 -22.76103 -20.46822 -18.46358 -18.22108 -17.44843 -16.67126 -16.46673 -15.89586 -15.53244 -14.95935 -14.81293 -14.16970 -13.90680 -13.54309 -13.20764 -13.08387 -12.84022 -12.74694 -12.51764 -12.34203 -12.14349 -12.06738 -11.81632 -11.45935 -11.34113 -10.99770 -10.50736 -9.87847 -8.41963 -8.14123 -6.29858 -0.05844 0.23650 1.39723 1.41225 1.49033 1.52878 1.89094 2.43020 2.51880 3.11769 3.39354 3.75478 3.92194 3.98519 4.12880 4.49195 4.63296 4.70705 4.81376 4.88568 4.91143 4.92681 5.06706 5.11575 5.25117 5.27626 5.35854 5.49203 5.61351 5.75518 5.78711 5.99301 6.14414 6.24824 6.73675 6.82673 7.37204 8.90812 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043814 B = 0.006018 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.911318 B = 4651.512194 C = 4798.203498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.124 4.124 3 C -0.070 4.070 4 C -0.122 4.122 5 C 0.082 3.918 6 C -0.307 4.307 7 C 0.127 3.873 8 C 0.110 3.890 9 H 0.003 0.997 10 C -0.114 4.114 11 C -0.524 4.524 12 H 0.040 0.960 13 C 0.019 3.981 14 N -0.913 5.913 15 Si 0.963 3.037 16 H -0.267 1.267 17 H -0.276 1.276 18 H -0.277 1.277 19 N -0.380 5.380 20 N -0.287 5.287 21 C 0.071 3.929 22 H 0.087 0.913 23 H 0.095 0.905 24 H 0.074 0.926 25 H 0.185 0.815 26 H 0.171 0.829 27 H 0.154 0.846 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.025 0.975 31 H 0.266 0.734 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.061 12.179 1.483 20.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.093 4.093 4 C -0.142 4.142 5 C -0.037 4.037 6 C -0.335 4.335 7 C -0.028 4.028 8 C 0.089 3.911 9 H 0.021 0.979 10 C -0.173 4.173 11 C -0.563 4.563 12 H 0.059 0.941 13 C -0.180 4.180 14 N -0.552 5.552 15 Si 0.788 3.212 16 H -0.192 1.192 17 H -0.201 1.201 18 H -0.203 1.203 19 N -0.206 5.206 20 N -0.052 5.052 21 C -0.054 4.054 22 H 0.105 0.895 23 H 0.114 0.886 24 H 0.093 0.907 25 H 0.202 0.798 26 H 0.189 0.811 27 H 0.172 0.828 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -16.494 10.867 1.529 19.811 hybrid contribution 1.278 -0.055 -0.749 1.483 sum -15.215 10.812 0.780 18.682 Atomic orbital electron populations 1.20736 0.85747 1.04705 1.03980 1.19991 0.99125 0.90597 1.03076 1.21578 0.92841 0.99445 0.95410 1.20979 0.95382 0.94755 1.03054 1.20122 0.92329 0.88794 1.02459 1.21339 0.94857 0.94815 1.22515 1.22911 0.93682 0.94682 0.91549 1.17258 0.85439 0.91964 0.96400 0.97878 1.21559 1.00585 0.99342 0.95781 1.21064 1.08442 1.35127 0.91633 0.94143 1.25697 0.96285 0.94531 1.01477 1.69993 1.16884 1.35858 1.32437 0.85482 0.78172 0.78077 0.79463 1.19182 1.20117 1.20259 1.77781 0.98362 1.08470 1.35957 1.46524 1.06199 1.05959 1.46563 1.21866 0.78585 1.02285 1.02688 0.89454 0.88601 0.90714 0.79801 0.81143 0.82801 0.93909 0.91272 0.95569 0.92430 0.81082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.98 10.00 71.24 0.71 -0.27 16 2 C -0.12 -2.48 5.84 -20.08 -0.12 -2.59 16 3 C -0.07 -1.29 9.74 22.31 0.22 -1.07 16 4 C -0.12 -3.11 10.11 22.39 0.23 -2.88 16 5 C 0.08 3.12 6.81 39.10 0.27 3.38 16 6 C -0.31 -13.72 10.05 22.51 0.23 -13.49 16 7 C 0.13 6.60 6.02 42.69 0.26 6.85 16 8 C 0.11 6.26 2.76 -12.29 -0.03 6.23 16 9 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 10 C -0.11 -5.90 8.54 71.98 0.61 -5.29 16 11 C -0.52 -31.41 8.55 25.60 0.22 -31.19 16 12 H 0.04 2.48 7.74 -2.91 -0.02 2.46 16 13 C 0.02 1.12 5.30 84.66 0.45 1.57 16 14 N -0.91 -53.97 11.32 21.45 0.24 -53.73 16 15 Si 0.96 45.34 29.54 68.60 2.03 47.36 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 18 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 19 N -0.38 -19.30 12.66 -47.88 -0.61 -19.90 16 20 N -0.29 -11.61 3.90 -187.78 -0.73 -12.35 16 21 C 0.07 2.05 10.80 83.20 0.90 2.95 16 22 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 23 H 0.10 0.60 8.09 -2.39 -0.02 0.58 16 24 H 0.07 0.73 8.07 -2.38 -0.02 0.71 16 25 H 0.18 1.61 8.06 -2.91 -0.02 1.58 16 26 H 0.17 3.24 8.06 -2.91 -0.02 3.22 16 27 H 0.15 6.36 7.37 -2.91 -0.02 6.34 16 28 H 0.04 2.06 7.25 -2.39 -0.02 2.04 16 29 H 0.07 3.83 6.07 -2.39 -0.01 3.82 16 30 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 32 H 0.17 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -74.74 274.75 5.97 -68.77 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: 1.11 Total: 5.66 kcal Atomic # 6 Polarization: -39.74 SS G_CDS: 3.93 Total: -35.81 kcal Atomic # 7 Polarization: -84.88 SS G_CDS: -1.10 Total: -85.98 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -74.74 5.97 -68.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260270426.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.482 kcal (2) G-P(sol) polarization free energy of solvation -74.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds