Wall clock time and date at job start Mon Mar 30 2020 03:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40474 * 120.20586 * 2 1 4 4 C 1.34934 * 120.43310 * 180.02562 * 3 2 1 5 5 N 1.36535 * 120.65790 * 359.97438 * 4 3 2 6 6 N 1.40043 * 132.42946 * 179.97438 * 5 4 3 7 7 C 1.31491 * 108.91451 * 180.02562 * 6 5 4 8 8 C 1.38546 * 109.00375 * 0.02562 * 7 6 5 9 9 C 1.50708 * 126.21190 * 179.97438 * 8 7 6 10 10 H 1.09005 * 109.46650 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.46977 * 300.02396 * 9 8 7 12 12 C 1.50700 * 109.46953 * 60.03036 * 9 8 7 13 13 H 1.07999 * 120.00176 * 354.47660 * 12 9 8 14 14 C 1.37879 * 119.99857 * 174.48507 * 12 9 8 15 15 N 1.31516 * 119.99966 * 164.74647 * 14 12 9 16 16 Si 1.86798 * 120.00018 * 344.75032 * 14 12 9 17 17 H 1.48497 * 109.47065 * 270.00130 * 16 14 12 18 18 H 1.48494 * 109.47154 * 149.99880 * 16 14 12 19 19 H 1.48502 * 109.47169 * 29.99780 * 16 14 12 20 20 C 1.37128 * 120.12635 * 0.27222 * 5 4 3 21 21 C 1.36064 * 120.20657 * 179.97438 * 2 1 3 22 22 H 1.08992 * 109.47029 * 90.00022 * 1 2 3 23 23 H 1.08997 * 109.46803 * 210.00365 * 1 2 3 24 24 H 1.09006 * 109.46843 * 330.00096 * 1 2 3 25 25 H 1.08007 * 119.78603 * 359.97438 * 3 2 1 26 26 H 1.08004 * 119.67134 * 179.97438 * 4 3 2 27 27 H 1.07995 * 125.49796 * 180.02562 * 7 6 5 28 28 H 1.09009 * 109.46577 * 173.70397 * 11 9 8 29 29 H 1.08995 * 109.47253 * 293.70114 * 11 9 8 30 30 H 1.08999 * 109.47032 * 53.71060 * 11 9 8 31 31 H 0.97004 * 119.99602 * 354.90636 * 15 14 12 32 32 H 1.08003 * 120.38462 * 0.04945 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2137 1.2140 0.0000 4 6 3.5630 1.2194 -0.0005 5 7 4.2639 0.0476 -0.0005 6 7 5.6360 -0.2326 -0.0015 7 6 5.8047 -1.5367 -0.0016 8 6 4.5634 -2.1521 -0.0013 9 6 4.3059 -3.6371 -0.0018 10 1 3.2312 -3.8194 -0.0019 11 6 4.9294 -4.2623 -1.2513 12 6 4.9199 -4.2538 1.2285 13 1 5.5196 -3.6499 1.8934 14 6 4.7163 -5.5891 1.5052 15 7 5.4750 -6.2008 2.3882 16 14 3.3629 -6.5293 0.6257 17 1 2.1038 -6.4310 1.4068 18 1 3.7548 -7.9557 0.4960 19 1 3.1539 -5.9486 -0.7250 20 6 3.5993 -1.1518 -0.0056 21 6 2.1915 -1.1759 0.0005 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8901 0.5139 25 1 1.6735 2.1493 -0.0004 26 1 4.0940 2.1599 -0.0009 27 1 6.7571 -2.0458 -0.0018 28 1 4.8413 -5.3475 -1.1971 29 1 4.4089 -3.8994 -2.1375 30 1 5.9821 -3.9857 -1.3093 31 1 6.2242 -5.7338 2.7903 32 1 1.6612 -2.1167 0.0001 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260315876.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:01 Heat of formation + Delta-G solvation = 70.385928 kcal Electronic energy + Delta-G solvation = -15558.165125 eV Core-core repulsion = 13098.386517 eV Total energy + Delta-G solvation = -2459.778608 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.88395 -38.58102 -36.50752 -34.35923 -33.09564 -31.92370 -29.58872 -27.53135 -26.64053 -24.44177 -23.37798 -22.71975 -20.63695 -19.49000 -17.95530 -17.47336 -16.52899 -16.41245 -15.70077 -15.61413 -15.05306 -14.65322 -14.26393 -14.11796 -14.00455 -13.44102 -13.15629 -12.83381 -12.74329 -12.39671 -12.19887 -12.14897 -11.96023 -11.40515 -11.32902 -11.19526 -10.82620 -10.42853 -10.08110 -8.76561 -8.17409 -6.29196 -0.06690 0.19809 1.46468 1.51749 1.57504 1.76549 1.82130 2.49993 2.56301 3.12991 3.36913 3.72371 3.82136 4.09340 4.22263 4.46963 4.50704 4.62434 4.67921 4.81263 4.88709 4.90822 5.00110 5.01998 5.17062 5.21610 5.35410 5.47520 5.62342 5.68168 5.80868 6.06255 6.07761 6.16983 6.63285 6.67057 7.47987 8.69572 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.028648 B = 0.008586 C = 0.007260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.133318 B = 3260.455005 C = 3855.842222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.050 4.050 3 C -0.148 4.148 4 C 0.085 3.915 5 N -0.288 5.288 6 N -0.358 5.358 7 C 0.067 3.933 8 C -0.225 4.225 9 C 0.091 3.909 10 H 0.031 0.969 11 C -0.132 4.132 12 C -0.584 4.584 13 H 0.009 0.991 14 C -0.023 4.023 15 N -0.945 5.945 16 Si 1.082 2.918 17 H -0.273 1.273 18 H -0.289 1.289 19 H -0.233 1.233 20 C 0.078 3.922 21 C -0.137 4.137 22 H 0.092 0.908 23 H 0.070 0.930 24 H 0.095 0.905 25 H 0.199 0.801 26 H 0.191 0.809 27 H 0.181 0.819 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.038 0.962 31 H 0.249 0.751 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.298 14.673 -8.285 20.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.055 4.055 3 C -0.169 4.169 4 C -0.039 4.039 5 N -0.057 5.057 6 N -0.184 5.184 7 C -0.107 4.107 8 C -0.236 4.236 9 C 0.071 3.929 10 H 0.049 0.951 11 C -0.190 4.190 12 C -0.622 4.622 13 H 0.028 0.972 14 C -0.220 4.220 15 N -0.582 5.582 16 Si 0.903 3.097 17 H -0.199 1.199 18 H -0.215 1.215 19 H -0.156 1.156 20 C -0.041 4.041 21 C -0.157 4.157 22 H 0.110 0.890 23 H 0.089 0.911 24 H 0.114 0.886 25 H 0.216 0.784 26 H 0.208 0.792 27 H 0.198 0.802 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.278 14.340 -8.359 20.646 hybrid contribution 1.543 0.376 0.809 1.782 sum -10.735 14.716 -7.550 19.718 Atomic orbital electron populations 1.20883 0.87050 1.04526 1.04088 1.20323 0.98819 0.91481 0.94895 1.21253 0.91041 1.00566 1.04027 1.22174 0.93078 0.88133 1.00523 1.46369 1.05707 1.06108 1.47477 1.77603 0.89929 1.16484 1.34336 1.23572 0.99707 0.90422 0.96994 1.20374 0.90988 0.96612 1.15648 1.17345 0.95731 0.86379 0.93477 0.95117 1.22060 0.99926 0.99781 0.97198 1.22175 1.34234 0.96128 1.09625 0.97246 1.27275 1.01595 0.96496 0.96589 1.70945 1.17265 1.39504 1.30481 0.83678 0.73663 0.74710 0.77664 1.19926 1.21477 1.15586 1.19703 0.94344 0.86309 1.03709 1.20686 0.89026 1.00940 1.05037 0.88957 0.91056 0.88619 0.78410 0.79247 0.80212 0.93594 0.93386 0.94299 0.94217 0.83778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.02 71.24 0.71 -0.74 16 2 C -0.05 -1.11 5.88 -19.83 -0.12 -1.22 16 3 C -0.15 -2.76 9.67 22.05 0.21 -2.55 16 4 C 0.08 2.13 11.19 83.20 0.93 3.06 16 5 N -0.29 -10.67 3.90 -187.79 -0.73 -11.40 16 6 N -0.36 -15.09 12.66 -57.54 -0.73 -15.81 16 7 C 0.07 3.00 11.26 84.82 0.96 3.95 16 8 C -0.23 -10.39 4.84 -19.62 -0.09 -10.48 16 9 C 0.09 4.43 2.22 -12.28 -0.03 4.40 16 10 H 0.03 1.44 6.30 -2.38 -0.02 1.43 16 11 C -0.13 -5.80 8.43 71.98 0.61 -5.20 16 12 C -0.58 -34.29 8.71 25.60 0.22 -34.06 16 13 H 0.01 0.61 7.93 -2.91 -0.02 0.58 16 14 C -0.02 -1.37 5.33 84.65 0.45 -0.92 16 15 N -0.95 -60.84 13.70 21.45 0.29 -60.55 16 16 Si 1.08 49.98 26.17 68.60 1.80 51.78 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 18 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 19 H -0.23 -9.31 5.54 99.48 0.55 -8.76 16 20 C 0.08 3.11 6.76 39.11 0.26 3.38 16 21 C -0.14 -4.34 9.58 22.39 0.21 -4.13 16 22 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.07 1.01 8.08 -2.39 -0.02 0.99 16 24 H 0.10 0.82 8.10 -2.38 -0.02 0.80 16 25 H 0.20 1.67 8.06 -2.91 -0.02 1.64 16 26 H 0.19 3.44 8.06 -2.91 -0.02 3.41 16 27 H 0.18 7.81 8.06 -2.91 -0.02 7.78 16 28 H 0.05 2.01 5.06 -2.38 -0.01 2.00 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.04 1.69 7.85 -2.39 -0.02 1.67 16 31 H 0.25 16.39 8.73 -92.71 -0.81 15.58 16 32 H 0.14 4.37 7.76 -2.91 -0.02 4.34 16 Total: -1.00 -75.99 270.35 5.88 -70.12 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 0.92 Total: 10.38 kcal Atomic # 6 Polarization: -48.84 SS G_CDS: 4.33 Total: -44.51 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -1.17 Total: -87.76 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 1.80 Total: 51.78 kcal Total: -75.99 5.88 -70.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260315876.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.502 kcal (2) G-P(sol) polarization free energy of solvation -75.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds