Wall clock time and date at job start Mon Mar 30 2020 03:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40478 * 120.20524 * 2 1 4 4 C 1.34933 * 120.43075 * 180.02562 * 3 2 1 5 5 N 1.36534 * 120.66274 * 359.97438 * 4 3 2 6 6 N 1.40047 * 132.43565 * 180.02562 * 5 4 3 7 7 C 1.31484 * 108.91327 * 179.97438 * 6 5 4 8 8 C 1.38539 * 109.00917 * 359.97438 * 7 6 5 9 9 C 1.50701 * 126.21823 * 179.97438 * 8 7 6 10 10 H 1.08992 * 109.47480 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.46839 * 59.97366 * 9 8 7 12 12 C 1.50698 * 109.47084 * 299.97840 * 9 8 7 13 13 H 1.07997 * 119.99984 * 359.97438 * 12 9 8 14 14 C 1.37885 * 120.00220 * 179.97438 * 12 9 8 15 15 N 1.31515 * 119.99489 * 359.97438 * 14 12 9 16 16 Si 1.86797 * 120.00049 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.47027 * 60.00247 * 16 14 12 18 18 H 1.48500 * 109.46861 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47269 * 299.99914 * 16 14 12 20 20 C 1.37124 * 120.12139 * 359.97438 * 5 4 3 21 21 C 1.36074 * 120.20833 * 179.97438 * 2 1 3 22 22 H 1.08994 * 109.47215 * 90.00027 * 1 2 3 23 23 H 1.09006 * 109.46766 * 209.99579 * 1 2 3 24 24 H 1.08995 * 109.47022 * 329.99574 * 1 2 3 25 25 H 1.07999 * 119.78333 * 0.02562 * 3 2 1 26 26 H 1.08000 * 119.66452 * 179.97438 * 4 3 2 27 27 H 1.08003 * 125.49183 * 179.97438 * 7 6 5 28 28 H 1.08998 * 109.46721 * 60.00611 * 11 9 8 29 29 H 1.09001 * 109.47113 * 179.97438 * 11 9 8 30 30 H 1.08992 * 109.47293 * 300.00371 * 11 9 8 31 31 H 0.96999 * 119.99734 * 179.97438 * 15 14 12 32 32 H 1.08000 * 120.37921 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2137 1.2140 0.0000 4 6 3.5630 1.2194 -0.0005 5 7 4.2640 0.0477 -0.0005 6 7 5.6361 -0.2327 -0.0005 7 6 5.8046 -1.5367 0.0000 8 6 4.5635 -2.1521 0.0010 9 6 4.3058 -3.6370 0.0013 10 1 3.2313 -3.8193 0.0026 11 6 4.9308 -4.2627 1.2499 12 6 4.9186 -4.2534 -1.2298 13 1 5.4418 -3.6320 -1.9415 14 6 4.8112 -5.6106 -1.4477 15 7 4.1744 -6.3673 -0.5807 16 14 5.5713 -6.3748 -2.9733 17 1 7.0353 -6.1260 -2.9746 18 1 5.3184 -7.8381 -2.9724 19 1 4.9650 -5.7679 -4.1854 20 6 3.5994 -1.1518 0.0005 21 6 2.1916 -1.1760 0.0005 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 1.6735 2.1492 0.0004 26 1 4.0938 2.1599 -0.0009 27 1 6.7571 -2.0458 -0.0002 28 1 4.4876 -3.8169 2.1403 29 1 4.7441 -5.3366 1.2504 30 1 6.0054 -4.0803 1.2486 31 1 4.0986 -7.3221 -0.7341 32 1 1.6612 -2.1167 0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260315884.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:03 Heat of formation + Delta-G solvation = 90.118443 kcal Electronic energy + Delta-G solvation = -15488.009330 eV Core-core repulsion = 13029.086388 eV Total energy + Delta-G solvation = -2458.922942 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.36449 -37.19698 -34.56140 -32.74861 -31.03003 -30.25251 -28.09058 -26.03476 -25.03578 -23.05627 -21.72134 -21.30741 -19.05789 -16.80501 -16.21675 -15.82350 -14.97873 -14.94417 -14.47847 -14.17728 -13.31653 -13.14129 -12.74915 -12.55883 -12.33466 -11.66801 -11.39739 -11.34553 -11.07519 -10.87057 -10.72896 -10.36639 -10.31498 -9.96840 -9.65806 -9.44212 -8.85451 -8.67356 -8.31254 -6.69316 -5.94749 -4.01432 1.24115 1.61160 2.87343 3.34515 3.38801 3.40330 3.45263 3.91468 4.47862 4.69883 4.90460 5.10793 5.26372 5.35187 5.50214 5.61130 5.66156 5.86619 6.01837 6.12646 6.16249 6.43715 6.61924 6.70836 6.92040 6.96641 7.07832 7.30613 7.46593 7.52869 7.74821 7.96734 8.16122 8.25570 8.49527 9.00818 9.62834 11.09930 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030391 B = 0.007532 C = 0.006890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.105560 B = 3716.608162 C = 4062.805592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.087 4.087 3 C -0.170 4.170 4 C 0.106 3.894 5 N -0.288 5.288 6 N -0.336 5.336 7 C 0.077 3.923 8 C -0.171 4.171 9 C 0.112 3.888 10 H 0.031 0.969 11 C -0.130 4.130 12 C -0.504 4.504 13 H 0.054 0.946 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.071 3.929 21 C -0.085 4.085 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.143 0.857 26 H 0.157 0.843 27 H 0.186 0.814 28 H 0.006 0.994 29 H 0.084 0.916 30 H 0.026 0.974 31 H 0.260 0.740 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.395 11.616 2.044 12.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.092 4.092 3 C -0.193 4.193 4 C -0.019 4.019 5 N -0.057 5.057 6 N -0.161 5.161 7 C -0.098 4.098 8 C -0.182 4.182 9 C 0.092 3.908 10 H 0.049 0.951 11 C -0.188 4.188 12 C -0.543 4.543 13 H 0.073 0.927 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.204 1.204 20 C -0.045 4.045 21 C -0.105 4.105 22 H 0.089 0.911 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.161 0.839 26 H 0.174 0.826 27 H 0.203 0.797 28 H 0.025 0.975 29 H 0.103 0.897 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.698 12.520 2.075 13.533 hybrid contribution 0.128 -1.159 -0.916 1.483 sum -4.570 11.361 1.158 12.301 Atomic orbital electron populations 1.20699 0.90556 1.02720 1.02337 1.19668 0.96425 0.92396 1.00719 1.20500 0.91919 0.98827 1.08027 1.21209 0.91789 0.88360 1.00495 1.46079 1.06162 1.04971 1.48529 1.77687 0.88611 1.17325 1.32451 1.23643 0.99877 0.89762 0.96469 1.20949 0.89607 0.97911 1.09693 1.17178 0.96844 0.82385 0.94389 0.95073 1.21769 0.98002 1.03734 0.95309 1.21120 1.34980 0.92343 1.05808 0.92749 1.24941 0.95351 0.97202 0.96420 1.69874 1.42481 1.05465 1.35261 0.86678 0.79822 0.78006 0.83624 1.20271 1.21322 1.20405 1.19432 0.93133 0.86318 1.05608 1.20510 0.90462 0.99001 1.00509 0.91136 0.91281 0.91661 0.83949 0.82599 0.79674 0.97493 0.89704 0.95457 0.92978 0.83918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.02 36.00 0.36 -0.74 16 2 C -0.09 -1.23 5.88 -104.56 -0.62 -1.84 16 3 C -0.17 -2.16 9.67 -39.91 -0.39 -2.55 16 4 C 0.11 1.57 11.19 -16.63 -0.19 1.39 16 5 N -0.29 -5.57 3.90 -10.71 -0.04 -5.61 16 6 N -0.34 -6.97 12.66 30.46 0.39 -6.58 16 7 C 0.08 1.66 11.43 -17.59 -0.20 1.46 16 8 C -0.17 -3.91 4.83 -104.25 -0.50 -4.41 16 9 C 0.11 2.82 2.68 -92.92 -0.25 2.57 16 10 H 0.03 0.84 7.67 -51.93 -0.40 0.44 16 11 C -0.13 -3.17 8.86 37.16 0.33 -2.84 16 12 C -0.50 -13.82 8.42 -34.44 -0.29 -14.11 16 13 H 0.05 1.50 7.73 -52.49 -0.41 1.10 16 14 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 15 N -0.89 -25.18 11.32 55.43 0.63 -24.55 16 16 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 C 0.07 1.48 6.76 -84.27 -0.57 0.91 16 21 C -0.09 -1.50 9.58 -39.39 -0.38 -1.88 16 22 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 24 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 25 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 26 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 27 H 0.19 3.61 8.06 -52.48 -0.42 3.19 16 28 H 0.01 0.14 8.14 -51.93 -0.42 -0.29 16 29 H 0.08 2.24 6.07 -51.93 -0.32 1.92 16 30 H 0.03 0.62 8.02 -51.93 -0.42 0.21 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.14 2.45 7.76 -52.49 -0.41 2.05 16 LS Contribution 275.56 15.07 4.15 4.15 Total: -1.00 -30.68 275.56 -6.71 -37.39 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -4.03 Total: -0.65 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -2.78 Total: -20.44 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.97 Total: -36.75 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.68 -6.71 -37.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260315884.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.508 kcal (2) G-P(sol) polarization free energy of solvation -30.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds