Wall clock time and date at job start Mon Mar 30 2020 03:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40478 * 120.20524 * 2 1 4 4 C 1.34933 * 120.43075 * 180.02562 * 3 2 1 5 5 N 1.36534 * 120.66274 * 359.97438 * 4 3 2 6 6 N 1.40047 * 132.43565 * 180.02562 * 5 4 3 7 7 C 1.31484 * 108.91327 * 179.97438 * 6 5 4 8 8 C 1.38539 * 109.00917 * 359.97438 * 7 6 5 9 9 C 1.50701 * 126.21823 * 179.97438 * 8 7 6 10 10 H 1.08992 * 109.47480 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.46839 * 59.97366 * 9 8 7 12 12 C 1.50698 * 109.47084 * 299.97840 * 9 8 7 13 13 H 1.07997 * 119.99984 * 359.97438 * 12 9 8 14 14 C 1.37885 * 120.00220 * 179.97438 * 12 9 8 15 15 N 1.31515 * 119.99489 * 359.97438 * 14 12 9 16 16 Si 1.86797 * 120.00049 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.47027 * 60.00247 * 16 14 12 18 18 H 1.48500 * 109.46861 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47269 * 299.99914 * 16 14 12 20 20 C 1.37124 * 120.12139 * 359.97438 * 5 4 3 21 21 C 1.36074 * 120.20833 * 179.97438 * 2 1 3 22 22 H 1.08994 * 109.47215 * 90.00027 * 1 2 3 23 23 H 1.09006 * 109.46766 * 209.99579 * 1 2 3 24 24 H 1.08995 * 109.47022 * 329.99574 * 1 2 3 25 25 H 1.07999 * 119.78333 * 0.02562 * 3 2 1 26 26 H 1.08000 * 119.66452 * 179.97438 * 4 3 2 27 27 H 1.08003 * 125.49183 * 179.97438 * 7 6 5 28 28 H 1.08998 * 109.46721 * 60.00611 * 11 9 8 29 29 H 1.09001 * 109.47113 * 179.97438 * 11 9 8 30 30 H 1.08992 * 109.47293 * 300.00371 * 11 9 8 31 31 H 0.96999 * 119.99734 * 179.97438 * 15 14 12 32 32 H 1.08000 * 120.37921 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2137 1.2140 0.0000 4 6 3.5630 1.2194 -0.0005 5 7 4.2640 0.0477 -0.0005 6 7 5.6361 -0.2327 -0.0005 7 6 5.8046 -1.5367 0.0000 8 6 4.5635 -2.1521 0.0010 9 6 4.3058 -3.6370 0.0013 10 1 3.2313 -3.8193 0.0026 11 6 4.9308 -4.2627 1.2499 12 6 4.9186 -4.2534 -1.2298 13 1 5.4418 -3.6320 -1.9415 14 6 4.8112 -5.6106 -1.4477 15 7 4.1744 -6.3673 -0.5807 16 14 5.5713 -6.3748 -2.9733 17 1 7.0353 -6.1260 -2.9746 18 1 5.3184 -7.8381 -2.9724 19 1 4.9650 -5.7679 -4.1854 20 6 3.5994 -1.1518 0.0005 21 6 2.1916 -1.1760 0.0005 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 1.6735 2.1492 0.0004 26 1 4.0938 2.1599 -0.0009 27 1 6.7571 -2.0458 -0.0002 28 1 4.4876 -3.8169 2.1403 29 1 4.7441 -5.3366 1.2504 30 1 6.0054 -4.0803 1.2486 31 1 4.0986 -7.3221 -0.7341 32 1 1.6612 -2.1167 0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260315884.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:03 Heat of formation + Delta-G solvation = 72.699969 kcal Electronic energy + Delta-G solvation = -15488.764652 eV Core-core repulsion = 13029.086388 eV Total energy + Delta-G solvation = -2459.678264 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.81038 -38.51637 -36.39288 -34.27133 -32.69716 -31.76252 -29.41615 -27.42673 -27.11824 -24.38509 -23.46092 -22.65462 -20.70120 -18.48498 -17.76161 -17.35726 -16.64308 -16.40697 -15.97760 -15.54324 -14.83023 -14.49494 -14.24439 -14.17855 -13.43454 -13.34347 -12.94776 -12.81758 -12.70745 -12.58772 -12.31004 -12.09573 -12.07654 -11.76503 -11.34398 -11.15463 -10.77816 -10.41589 -10.02326 -8.24904 -7.98277 -6.18246 -0.02607 0.25043 1.42697 1.43775 1.51235 1.53022 1.90813 2.44881 2.56614 3.21386 3.43569 3.77958 3.86283 4.15337 4.26274 4.53847 4.64917 4.73221 4.82721 4.89094 4.92679 4.99547 5.09759 5.20672 5.27391 5.32289 5.51863 5.62424 5.66841 5.79468 5.96816 6.12430 6.13816 6.42078 6.74963 6.89279 7.49010 8.99122 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030391 B = 0.007532 C = 0.006890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.105560 B = 3716.608162 C = 4062.805592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.052 4.052 3 C -0.150 4.150 4 C 0.087 3.913 5 N -0.289 5.289 6 N -0.355 5.355 7 C 0.071 3.929 8 C -0.226 4.226 9 C 0.120 3.880 10 H 0.001 0.999 11 C -0.118 4.118 12 C -0.520 4.520 13 H 0.044 0.956 14 C 0.016 3.984 15 N -0.917 5.917 16 Si 0.951 3.049 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.276 1.276 20 C 0.073 3.927 21 C -0.137 4.137 22 H 0.086 0.914 23 H 0.068 0.932 24 H 0.099 0.901 25 H 0.199 0.801 26 H 0.193 0.807 27 H 0.190 0.810 28 H 0.017 0.983 29 H 0.061 0.939 30 H 0.030 0.970 31 H 0.262 0.738 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.920 14.311 1.596 15.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.057 4.057 3 C -0.171 4.171 4 C -0.036 4.036 5 N -0.057 5.057 6 N -0.180 5.180 7 C -0.103 4.103 8 C -0.237 4.237 9 C 0.100 3.900 10 H 0.020 0.980 11 C -0.176 4.176 12 C -0.558 4.558 13 H 0.062 0.938 14 C -0.182 4.182 15 N -0.556 5.556 16 Si 0.777 3.223 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.202 1.202 20 C -0.045 4.045 21 C -0.157 4.157 22 H 0.105 0.895 23 H 0.087 0.913 24 H 0.117 0.883 25 H 0.216 0.784 26 H 0.210 0.790 27 H 0.207 0.793 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.211 15.230 1.631 16.529 hybrid contribution 0.358 -1.767 -0.753 1.954 sum -5.853 13.463 0.878 14.707 Atomic orbital electron populations 1.20867 0.87322 1.04498 1.03811 1.20290 0.98679 0.91530 0.95247 1.21219 0.91189 1.00305 1.04424 1.22171 0.92986 0.88199 1.00283 1.46367 1.05785 1.05904 1.47664 1.77587 0.89664 1.16592 1.34202 1.23652 0.99712 0.90215 0.96730 1.20646 0.91149 0.96963 1.14947 1.16895 0.94629 0.84652 0.93809 0.98046 1.21606 0.98216 1.02047 0.95774 1.21380 1.35060 0.92743 1.06592 0.93761 1.25667 0.95785 0.97592 0.99162 1.69997 1.43317 1.05618 1.36692 0.85722 0.79153 0.77304 0.80134 1.19657 1.20586 1.20201 1.19682 0.94227 0.86567 1.04047 1.20604 0.89443 1.00495 1.05120 0.89538 0.91262 0.88253 0.78408 0.79015 0.79322 0.96374 0.92052 0.95128 0.92906 0.84960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 10.02 71.23 0.71 -1.03 16 2 C -0.05 -1.29 5.88 -19.82 -0.12 -1.41 16 3 C -0.15 -3.03 9.67 22.06 0.21 -2.81 16 4 C 0.09 2.27 11.19 83.20 0.93 3.20 16 5 N -0.29 -10.91 3.90 -187.79 -0.73 -11.64 16 6 N -0.35 -14.85 12.66 -57.54 -0.73 -15.57 16 7 C 0.07 3.14 11.43 84.82 0.97 4.11 16 8 C -0.23 -10.82 4.83 -19.63 -0.09 -10.92 16 9 C 0.12 6.40 2.68 -12.28 -0.03 6.36 16 10 H 0.00 0.08 7.67 -2.39 -0.02 0.06 16 11 C -0.12 -6.06 8.86 71.98 0.64 -5.42 16 12 C -0.52 -29.72 8.42 25.60 0.22 -29.50 16 13 H 0.04 2.55 7.73 -2.91 -0.02 2.53 16 14 C 0.02 0.92 5.30 84.66 0.45 1.37 16 15 N -0.92 -53.42 11.32 21.45 0.24 -53.18 16 16 Si 0.95 44.55 29.54 68.60 2.03 46.57 16 17 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 C 0.07 3.08 6.76 39.11 0.26 3.34 16 21 C -0.14 -4.80 9.58 22.39 0.21 -4.59 16 22 H 0.09 1.23 8.14 -2.39 -0.02 1.22 16 23 H 0.07 1.17 8.08 -2.38 -0.02 1.15 16 24 H 0.10 1.00 8.10 -2.39 -0.02 0.98 16 25 H 0.20 1.91 8.06 -2.91 -0.02 1.88 16 26 H 0.19 3.53 8.06 -2.91 -0.02 3.50 16 27 H 0.19 7.81 8.06 -2.91 -0.02 7.79 16 28 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 3.39 6.07 -2.39 -0.01 3.38 16 30 H 0.03 1.47 8.02 -2.39 -0.02 1.45 16 31 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 32 H 0.13 4.79 7.76 -2.91 -0.02 4.76 16 Total: -1.00 -69.92 275.56 6.28 -63.64 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 1.11 Total: 7.46 kcal Atomic # 6 Polarization: -41.64 SS G_CDS: 4.36 Total: -37.28 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -1.22 Total: -80.40 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -69.92 6.28 -63.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260315884.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.341 kcal (2) G-P(sol) polarization free energy of solvation -69.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds