Wall clock time and date at job start Mon Mar 30 2020 03:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30907 * 125.31361 * 2 1 4 4 C 1.33405 * 109.87189 * 180.02562 * 3 2 1 5 5 C 1.37993 * 107.45976 * 359.78167 * 4 3 2 6 6 C 1.40965 * 133.71102 * 179.97438 * 5 4 3 7 7 C 1.35881 * 119.17558 * 180.02562 * 6 5 4 8 8 C 1.50698 * 120.11075 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.47463 * 359.97438 * 8 7 6 10 10 C 1.53003 * 109.47394 * 119.99899 * 8 7 6 11 11 C 1.50704 * 109.46979 * 240.00168 * 8 7 6 12 12 H 1.07995 * 119.99602 * 359.97438 * 11 8 7 13 13 C 1.37879 * 120.00109 * 180.02562 * 11 8 7 14 14 N 1.31517 * 119.99848 * 359.97438 * 13 11 8 15 15 Si 1.86794 * 120.00115 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47062 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47168 * 119.99629 * 15 13 11 18 18 H 1.48500 * 109.47370 * 239.99760 * 15 13 11 19 19 C 1.40811 * 119.77375 * 0.02562 * 7 6 5 20 20 C 1.34665 * 120.61685 * 0.03333 * 19 7 6 21 21 N 1.35031 * 125.31998 * 179.63374 * 2 1 3 22 22 H 1.08998 * 109.46960 * 270.36017 * 1 2 3 23 23 H 1.08993 * 109.46849 * 30.36332 * 1 2 3 24 24 H 1.09000 * 109.46778 * 150.36439 * 1 2 3 25 25 H 1.07996 * 126.27011 * 179.76213 * 4 3 2 26 26 H 1.07999 * 120.41143 * 0.02736 * 6 5 4 27 27 H 1.09003 * 109.46390 * 59.99857 * 10 8 7 28 28 H 1.08993 * 109.47148 * 179.97438 * 10 8 7 29 29 H 1.09000 * 109.47092 * 300.00001 * 10 8 7 30 30 H 0.97003 * 119.99733 * 180.02562 * 14 13 11 31 31 H 1.08001 * 119.68982 * 180.02562 * 19 7 6 32 32 H 1.07999 * 119.72270 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2637 1.0682 0.0000 4 6 3.5496 0.7130 -0.0006 5 6 3.5982 -0.6661 0.0041 6 6 4.6508 -1.6037 0.0054 7 6 4.3563 -2.9302 0.0099 8 6 5.4651 -3.9508 0.0120 9 1 6.4285 -3.4408 0.0088 10 6 5.3533 -4.8229 1.2641 11 6 5.3523 -4.8176 -1.2157 12 1 4.5569 -4.6467 -1.9260 13 6 6.2638 -5.8293 -1.4314 14 7 7.2320 -6.0377 -0.5661 15 14 6.1234 -6.9042 -2.9527 16 1 4.9571 -6.4674 -3.7615 17 1 7.3616 -6.7793 -3.7630 18 1 5.9404 -8.3199 -2.5434 19 6 3.0116 -3.3479 0.0127 20 6 2.0128 -2.4446 0.0103 21 7 2.2877 -1.1017 0.0070 22 1 -0.3633 0.0065 1.0276 23 1 -0.3633 0.8867 -0.5194 24 1 -0.3633 -0.8933 -0.5082 25 1 4.3973 1.3822 -0.0043 26 1 5.6786 -1.2718 0.0028 27 1 4.3900 -5.3329 1.2668 28 1 6.1550 -5.5613 1.2654 29 1 5.4350 -4.1959 2.1520 30 1 7.8735 -6.7492 -0.7181 31 1 2.7791 -4.4026 0.0168 32 1 0.9866 -2.7810 0.0121 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260336304.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:30 Heat of formation + Delta-G solvation = 55.321431 kcal Electronic energy + Delta-G solvation = -15410.443485 eV Core-core repulsion = 12950.011632 eV Total energy + Delta-G solvation = -2460.431854 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.65762 -38.98775 -36.14782 -34.39106 -32.96249 -31.18263 -30.72764 -27.29353 -27.07776 -24.51405 -23.95374 -21.84102 -21.48200 -18.59376 -18.07601 -17.14297 -16.91600 -16.74141 -16.11360 -15.51059 -14.87598 -14.62798 -14.10378 -13.93246 -13.78431 -13.39958 -13.17752 -13.02677 -12.86894 -12.66304 -12.44849 -12.23741 -12.10880 -11.54216 -11.37392 -11.17815 -10.82993 -10.48546 -10.04666 -8.25638 -8.07072 -6.25248 0.01843 0.42795 1.40923 1.44361 1.54175 1.75999 2.08984 2.40904 2.63463 3.17570 3.56119 3.63818 3.87219 4.00786 4.11752 4.37576 4.52406 4.66961 4.75367 4.77696 4.92699 4.97199 5.06199 5.15066 5.22306 5.26413 5.46083 5.58849 5.65377 5.77862 5.96657 6.06000 6.31757 6.37528 6.83320 6.95457 7.43273 8.93635 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.041766 B = 0.006420 C = 0.006187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.238890 B = 4360.105595 C = 4524.418579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.142 3.858 3 N -0.482 5.482 4 C -0.054 4.054 5 C -0.001 4.001 6 C -0.123 4.123 7 C -0.047 4.047 8 C 0.074 3.926 9 H 0.007 0.993 10 C -0.122 4.122 11 C -0.520 4.520 12 H 0.054 0.946 13 C 0.017 3.983 14 N -0.916 5.916 15 Si 0.953 3.047 16 H -0.268 1.268 17 H -0.284 1.284 18 H -0.278 1.278 19 C -0.117 4.117 20 C 0.040 3.960 21 N -0.371 5.371 22 H 0.092 0.908 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.192 0.808 26 H 0.138 0.862 27 H 0.039 0.961 28 H 0.060 0.940 29 H 0.023 0.977 30 H 0.262 0.738 31 H 0.156 0.844 32 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.870 6.000 1.571 13.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.113 4.113 3 N -0.197 5.197 4 C -0.207 4.207 5 C -0.110 4.110 6 C -0.142 4.142 7 C -0.050 4.050 8 C 0.056 3.944 9 H 0.025 0.975 10 C -0.180 4.180 11 C -0.558 4.558 12 H 0.072 0.928 13 C -0.182 4.182 14 N -0.555 5.555 15 Si 0.779 3.221 16 H -0.193 1.193 17 H -0.211 1.211 18 H -0.203 1.203 19 C -0.138 4.138 20 C -0.078 4.078 21 N -0.044 5.044 22 H 0.110 0.890 23 H 0.114 0.886 24 H 0.111 0.889 25 H 0.208 0.792 26 H 0.156 0.844 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.173 0.827 32 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -12.191 6.707 1.606 14.007 hybrid contribution 1.116 -1.475 -0.722 1.985 sum -11.075 5.232 0.883 12.281 Atomic orbital electron populations 1.20291 0.81468 1.05181 1.04600 1.23949 0.97200 0.79125 1.11008 1.69865 1.02916 1.28810 1.18148 1.22711 0.95000 0.90730 1.12291 1.19852 0.84648 0.95647 1.10871 1.20417 0.97819 0.91310 1.04695 1.20398 0.96119 0.94246 0.94283 1.17733 0.90540 0.91279 0.94851 0.97492 1.21617 1.01169 0.99869 0.95336 1.21335 1.12793 1.15109 1.06591 0.92780 1.25676 0.94902 0.98563 0.99075 1.70013 1.16176 1.32560 1.36744 0.85573 0.77937 0.78748 0.79804 1.19265 1.21056 1.20339 1.20970 0.91308 1.00891 1.00611 1.22096 1.02381 0.79258 1.04094 1.42907 1.07695 1.06845 1.46903 0.88966 0.88582 0.88908 0.79152 0.84374 0.94155 0.92097 0.95842 0.92867 0.82674 0.77901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.03 10.33 71.24 0.74 -0.29 16 2 C 0.14 4.21 7.96 138.01 1.10 5.31 16 3 N -0.48 -16.42 11.19 -185.91 -2.08 -18.50 16 4 C -0.05 -1.87 12.02 84.40 1.01 -0.85 16 5 C 0.00 -0.02 6.80 38.76 0.26 0.24 16 6 C -0.12 -4.78 9.72 22.39 0.22 -4.56 16 7 C -0.05 -1.94 4.72 -19.78 -0.09 -2.04 16 8 C 0.07 3.59 2.48 -12.28 -0.03 3.56 16 9 H 0.01 0.37 7.87 -2.39 -0.02 0.35 16 10 C -0.12 -5.60 8.79 71.98 0.63 -4.97 16 11 C -0.52 -27.13 8.26 25.60 0.21 -26.92 16 12 H 0.05 2.80 7.61 -2.91 -0.02 2.77 16 13 C 0.02 0.89 5.30 84.65 0.45 1.34 16 14 N -0.92 -50.86 11.32 21.45 0.24 -50.62 16 15 Si 0.95 41.97 29.54 68.60 2.03 44.00 16 16 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 19 C -0.12 -4.02 8.69 22.08 0.19 -3.83 16 20 C 0.04 1.14 10.80 83.05 0.90 2.04 16 21 N -0.37 -11.99 2.94 -337.92 -0.99 -12.99 16 22 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.09 1.25 8.03 -2.39 -0.02 1.23 16 25 H 0.19 5.49 8.06 -2.91 -0.02 5.47 16 26 H 0.14 5.15 7.93 -2.91 -0.02 5.13 16 27 H 0.04 1.70 7.42 -2.39 -0.02 1.68 16 28 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 29 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 31 H 0.16 5.03 7.61 -2.91 -0.02 5.00 16 32 H 0.20 3.65 7.98 -2.91 -0.02 3.63 16 Total: -1.00 -63.44 273.51 5.89 -57.55 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 1.11 Total: 11.53 kcal Atomic # 6 Polarization: -36.56 SS G_CDS: 5.59 Total: -30.98 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -2.83 Total: -82.10 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -63.44 5.89 -57.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260336304.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.870 kcal (2) G-P(sol) polarization free energy of solvation -63.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds