Wall clock time and date at job start Mon Mar 30 2020 03:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30896 * 125.31899 * 2 1 4 4 C 1.33408 * 109.87149 * 179.44430 * 3 2 1 5 5 C 1.50705 * 126.26965 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.46680 * 270.85590 * 5 4 3 7 7 H 1.07990 * 120.00432 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99581 * 180.02562 * 6 5 4 9 9 N 1.31508 * 120.00386 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99892 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47091 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47293 * 120.00087 * 10 8 6 13 13 H 1.48502 * 109.47114 * 240.00052 * 10 8 6 14 14 C 1.37994 * 107.45528 * 0.67312 * 4 3 2 15 15 C 1.40970 * 133.70785 * 179.25338 * 14 4 3 16 16 C 1.35882 * 119.17565 * 179.97438 * 15 14 4 17 17 C 1.40809 * 119.77118 * 0.02562 * 16 15 14 18 18 C 1.34676 * 120.61746 * 359.97438 * 17 16 15 19 19 C 1.50697 * 119.71886 * 180.02562 * 18 17 16 20 20 N 1.35036 * 125.31264 * 180.02562 * 2 1 3 21 21 H 1.08996 * 109.46783 * 262.36676 * 1 2 3 22 22 H 1.09002 * 109.46722 * 22.36129 * 1 2 3 23 23 H 1.08995 * 109.46871 * 142.36303 * 1 2 3 24 24 H 1.09000 * 109.46919 * 30.85613 * 5 4 3 25 25 H 1.09002 * 109.47243 * 150.85351 * 5 4 3 26 26 H 0.96997 * 120.00646 * 179.97438 * 9 8 6 27 27 H 1.08003 * 120.41362 * 0.02754 * 15 14 4 28 28 H 1.07994 * 120.11703 * 180.02562 * 16 15 14 29 29 H 1.07998 * 119.69569 * 179.97438 * 17 16 15 30 30 H 1.09005 * 109.47599 * 97.67648 * 19 18 17 31 31 H 1.09002 * 109.47812 * 337.68046 * 19 18 17 32 32 H 1.08997 * 109.47167 * 217.67880 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2638 1.0680 0.0000 4 6 3.5497 0.7127 0.0122 5 6 4.7326 1.6464 0.0158 6 6 5.1248 1.9657 -1.4039 7 1 4.5730 1.5352 -2.2263 8 6 6.1888 2.8065 -1.6526 9 7 6.8611 3.3303 -0.6511 10 14 6.6745 3.2029 -3.4123 11 1 5.7662 2.4929 -4.3484 12 1 6.5712 4.6672 -3.6365 13 1 8.0727 2.7630 -3.6509 14 6 3.5981 -0.6663 0.0048 15 6 4.6507 -1.6040 -0.0022 16 6 4.3562 -2.9305 -0.0081 17 6 3.0114 -3.3481 -0.0076 18 6 2.0127 -2.4447 -0.0009 19 6 0.5807 -2.9141 0.0001 20 7 2.2876 -1.1019 -0.0005 21 1 -0.3633 -0.1365 1.0185 22 1 -0.3633 0.9504 -0.3910 23 1 -0.3633 -0.8138 -0.6275 24 1 4.4672 2.5672 0.5352 25 1 5.5700 1.1701 0.5257 26 1 7.6099 3.9216 -0.8260 27 1 5.6785 -1.2722 -0.0020 28 1 5.1507 -3.6620 -0.0131 29 1 2.7787 -4.4027 -0.0127 30 1 0.1949 -2.9019 1.0195 31 1 0.5306 -3.9287 -0.3951 32 1 -0.0194 -2.2514 -0.6234 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260349018.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:43 Heat of formation + Delta-G solvation = 75.153154 kcal Electronic energy + Delta-G solvation = -15521.394012 eV Core-core repulsion = 13061.822126 eV Total energy + Delta-G solvation = -2459.571886 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.24635 -37.22071 -34.32597 -32.88602 -31.28564 -30.56169 -28.94671 -27.37028 -24.92594 -23.16201 -22.67402 -20.79441 -19.19339 -16.69896 -16.31377 -16.03567 -15.57455 -15.16254 -14.54255 -13.85012 -13.62059 -13.37595 -13.12790 -12.75241 -12.34915 -12.13199 -11.91338 -11.62695 -11.22459 -11.08798 -10.87228 -10.67329 -10.59505 -10.07749 -9.79833 -9.30241 -9.14460 -8.64652 -8.34658 -6.63946 -5.94513 -3.98394 1.26009 1.77877 3.08036 3.34706 3.41679 3.47314 3.62370 4.02945 4.52812 4.56591 4.80524 4.96997 5.07903 5.28098 5.32399 5.39082 5.43221 5.53372 5.58874 5.66422 5.91058 5.96778 6.12717 6.31464 6.33726 6.55206 6.72800 7.11818 7.39562 7.57317 7.70830 7.84734 8.00104 8.41328 8.74246 9.04813 9.63988 11.13782 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.032158 B = 0.007438 C = 0.006722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.484333 B = 3763.657970 C = 4164.231147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.149 3.851 3 N -0.454 5.454 4 C 0.085 3.915 5 C 0.093 3.907 6 C -0.502 4.502 7 H 0.054 0.946 8 C 0.058 3.942 9 N -0.896 5.896 10 Si 0.894 3.106 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.284 1.284 14 C -0.031 4.031 15 C -0.034 4.034 16 C -0.166 4.166 17 C -0.134 4.134 18 C 0.062 3.938 19 C -0.119 4.119 20 N -0.367 5.367 21 H 0.071 0.929 22 H 0.088 0.912 23 H 0.074 0.926 24 H 0.037 0.963 25 H 0.034 0.966 26 H 0.261 0.739 27 H 0.146 0.854 28 H 0.128 0.872 29 H 0.135 0.865 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.269 -13.762 1.979 17.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.105 4.105 3 N -0.170 5.170 4 C -0.052 4.052 5 C 0.055 3.945 6 C -0.541 4.541 7 H 0.073 0.927 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.722 3.278 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.210 1.210 14 C -0.136 4.136 15 C -0.054 4.054 16 C -0.186 4.186 17 C -0.156 4.156 18 C -0.039 4.039 19 C -0.176 4.176 20 N -0.040 5.040 21 H 0.090 0.910 22 H 0.107 0.893 23 H 0.092 0.908 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.163 0.837 28 H 0.145 0.855 29 H 0.153 0.847 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.593 -12.853 2.009 16.776 hybrid contribution 0.711 -0.620 -0.990 1.367 sum -9.882 -13.472 1.019 16.739 Atomic orbital electron populations 1.20339 0.85469 1.03985 1.02457 1.23111 0.95321 0.80032 1.12085 1.69990 1.02928 1.26853 1.17232 1.22168 0.93143 0.89907 0.99977 1.17712 0.86639 0.92231 0.97876 1.21051 1.13728 1.27858 0.91487 0.92738 1.24964 0.96306 0.95861 0.97147 1.69957 1.20801 1.32319 1.30444 0.86491 0.78190 0.78164 0.84932 1.19834 1.20913 1.20987 1.19468 0.83221 0.95400 1.15489 1.20623 0.98395 0.91340 0.95006 1.20798 0.95888 0.95689 1.06270 1.20445 0.92132 0.98626 1.04397 1.20059 0.97236 0.81485 1.05151 1.21101 0.90796 1.02339 1.03329 1.42559 1.08317 1.04940 1.48227 0.91009 0.89334 0.90765 0.94448 0.94794 0.92943 0.83663 0.85451 0.84683 0.90526 0.89985 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.85 9.47 36.01 0.34 -0.51 16 2 C 0.15 2.87 7.94 -155.09 -1.23 1.64 16 3 N -0.45 -10.78 11.19 -6.39 -0.07 -10.85 16 4 C 0.08 2.11 6.40 -81.99 -0.52 1.59 16 5 C 0.09 2.58 5.53 -29.03 -0.16 2.42 16 6 C -0.50 -14.81 9.09 -34.44 -0.31 -15.12 16 7 H 0.05 1.64 7.74 -52.49 -0.41 1.23 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 9 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 10 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 11 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 C -0.03 -0.67 6.74 -84.10 -0.57 -1.24 16 15 C -0.03 -0.63 10.10 -39.39 -0.40 -1.02 16 16 C -0.17 -2.49 10.07 -39.45 -0.40 -2.89 16 17 C -0.13 -1.82 9.56 -39.87 -0.38 -2.20 16 18 C 0.06 0.91 6.79 -81.52 -0.55 0.36 16 19 C -0.12 -1.16 9.19 36.00 0.33 -0.83 16 20 N -0.37 -6.92 2.94 -54.00 -0.16 -7.08 16 21 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 23 H 0.07 0.78 5.12 -51.93 -0.27 0.52 16 24 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.15 2.64 8.06 -52.48 -0.42 2.21 16 28 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 29 H 0.14 1.31 7.99 -52.49 -0.42 0.89 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.60 7.97 -51.93 -0.41 0.19 16 32 H 0.08 0.77 4.91 -51.93 -0.26 0.51 16 LS Contribution 273.49 15.07 4.12 4.12 Total: -1.00 -34.05 273.49 -8.20 -42.25 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: -3.85 Total: -3.17 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -3.95 Total: -16.21 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.51 Total: -44.20 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -34.05 -8.20 -42.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260349018.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.407 kcal (2) G-P(sol) polarization free energy of solvation -34.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds