Wall clock time and date at job start Mon Mar 30 2020 03:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35104 * 126.40983 * 2 1 4 4 C 1.50701 * 125.68458 * 0.02562 * 3 2 1 5 5 H 1.09000 * 109.47592 * 359.97438 * 4 3 2 6 6 C 1.53004 * 109.47095 * 239.99871 * 4 3 2 7 7 C 1.50702 * 109.47102 * 120.00110 * 4 3 2 8 8 H 1.08001 * 120.00346 * 5.61851 * 7 4 3 9 9 C 1.37879 * 119.99922 * 185.62297 * 7 4 3 10 10 N 1.31510 * 120.00521 * 197.53537 * 9 7 4 11 11 Si 1.86803 * 119.99931 * 17.54048 * 9 7 4 12 12 H 1.48498 * 109.47171 * 180.02562 * 11 9 7 13 13 H 1.48498 * 109.47228 * 299.99717 * 11 9 7 14 14 H 1.48499 * 109.47495 * 60.00007 * 11 9 7 15 15 N 1.33506 * 108.62812 * 180.26926 * 3 2 1 16 16 C 1.32559 * 109.15617 * 359.60232 * 15 3 2 17 17 C 1.40936 * 132.32721 * 180.14578 * 16 15 3 18 18 C 1.36025 * 119.33145 * 180.26910 * 17 16 15 19 19 C 1.40472 * 119.69060 * 0.02562 * 18 17 16 20 20 C 1.34952 * 120.29766 * 0.02562 * 19 18 17 21 21 N 1.36481 * 120.61339 * 359.97438 * 20 19 18 22 22 H 1.09003 * 109.46743 * 90.00541 * 1 2 3 23 23 H 1.09001 * 109.47147 * 209.99900 * 1 2 3 24 24 H 1.08994 * 109.47341 * 330.00885 * 1 2 3 25 25 H 1.09001 * 109.46965 * 306.26517 * 6 4 3 26 26 H 1.08996 * 109.46770 * 66.26256 * 6 4 3 27 27 H 1.08999 * 109.47260 * 186.26961 * 6 4 3 28 28 H 0.97006 * 119.99204 * 354.87040 * 10 9 7 29 29 H 1.08007 * 120.33960 * 0.24908 * 17 16 15 30 30 H 1.07995 * 120.15897 * 179.97438 * 18 17 16 31 31 H 1.08003 * 119.85154 * 179.97438 * 19 18 17 32 32 H 1.08012 * 119.69411 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3090 1.0873 0.0000 4 6 1.8456 2.5213 0.0005 5 1 0.7560 2.5512 0.0005 6 6 2.3747 3.2287 -1.2487 7 6 2.3677 3.2174 1.2310 8 1 3.0477 2.7039 1.8945 9 6 1.9770 4.5100 1.5098 10 7 2.6689 5.2374 2.3593 11 14 0.4648 5.2280 0.6810 12 1 0.2607 6.6234 1.1464 13 1 0.6570 5.2212 -0.7915 14 1 -0.7254 4.4108 1.0286 15 7 3.5802 0.6796 -0.0059 16 6 3.6121 -0.6456 -0.0011 17 6 4.6765 -1.5693 -0.0012 18 6 4.4025 -2.9017 -0.0008 19 6 3.0671 -3.3374 -0.0009 20 6 2.0584 -2.4409 -0.0018 21 7 2.3193 -1.1012 -0.0022 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 3.4559 3.1030 -1.3069 26 1 1.9105 2.7964 -2.1350 27 1 2.1349 4.2906 -1.1940 28 1 3.4092 4.8419 2.8457 29 1 5.6995 -1.2229 -0.0019 30 1 5.2078 -3.6212 -0.0013 31 1 2.8466 -4.3947 -0.0010 32 1 1.0352 -2.7867 -0.0023 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260362134.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:32 Heat of formation + Delta-G solvation = 78.374713 kcal Electronic energy + Delta-G solvation = -15646.985688 eV Core-core repulsion = 13187.553500 eV Total energy + Delta-G solvation = -2459.432188 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.34536 -37.32031 -34.19176 -33.46751 -31.56172 -30.24418 -29.22844 -26.07756 -24.66269 -23.28244 -22.22896 -21.11590 -18.93763 -17.46719 -16.67900 -16.46692 -15.56248 -15.30597 -14.60274 -13.94854 -13.36812 -13.02165 -12.81460 -12.63271 -12.42243 -11.96492 -11.91859 -11.52010 -11.39254 -10.91719 -10.87677 -10.57197 -10.37812 -9.83475 -9.65680 -9.24791 -8.85467 -8.18178 -8.03459 -7.27897 -6.34682 -3.93616 1.01701 1.60466 2.97368 3.38494 3.44277 3.45250 3.64808 3.99938 4.55688 4.56368 4.72242 4.93470 5.07800 5.25169 5.35333 5.46457 5.60503 5.82369 5.85259 6.00116 6.11477 6.17652 6.33150 6.44281 6.56412 6.71044 6.82844 6.88640 7.11872 7.37893 7.45571 7.66236 8.17266 8.51300 8.62053 9.04809 9.73095 11.04429 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.041280 B = 0.007581 C = 0.006975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.130033 B = 3692.364919 C = 4013.447430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.096 4.096 3 C 0.131 3.869 4 C 0.085 3.915 5 H 0.034 0.966 6 C -0.141 4.141 7 C -0.581 4.581 8 H 0.057 0.943 9 C 0.028 3.972 10 N -0.908 5.908 11 Si 1.044 2.956 12 H -0.286 1.286 13 H -0.273 1.273 14 H -0.283 1.283 15 N -0.471 5.471 16 C 0.202 3.798 17 C -0.072 4.072 18 C -0.120 4.120 19 C -0.159 4.159 20 C 0.059 3.941 21 N -0.363 5.363 22 H 0.064 0.936 23 H 0.055 0.945 24 H 0.088 0.912 25 H 0.051 0.949 26 H 0.019 0.981 27 H 0.056 0.944 28 H 0.267 0.733 29 H 0.145 0.855 30 H 0.135 0.865 31 H 0.142 0.858 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.958 -16.227 -6.336 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.207 4.207 3 C -0.002 4.002 4 C 0.065 3.935 5 H 0.052 0.948 6 C -0.198 4.198 7 C -0.619 4.619 8 H 0.076 0.924 9 C -0.176 4.176 10 N -0.543 5.543 11 Si 0.872 3.128 12 H -0.212 1.212 13 H -0.199 1.199 14 H -0.210 1.210 15 N -0.191 5.191 16 C -0.039 4.039 17 C -0.092 4.092 18 C -0.144 4.144 19 C -0.181 4.181 20 C -0.064 4.064 21 N -0.037 5.037 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.107 0.893 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.163 0.837 30 H 0.153 0.847 31 H 0.160 0.840 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.233 -14.265 -6.485 16.000 hybrid contribution 0.345 -2.167 0.311 2.216 sum -2.888 -16.432 -6.174 17.789 Atomic orbital electron populations 1.20107 0.87042 1.03139 1.01956 1.21062 0.94443 0.84769 1.20428 1.21280 0.87158 0.96322 0.95416 1.17701 0.95115 0.84414 0.96252 0.94838 1.22148 1.01208 1.00409 0.96075 1.21849 1.30894 1.00923 1.08273 0.92429 1.25753 1.00823 0.93428 0.97600 1.70838 1.19642 1.36325 1.27479 0.84074 0.75895 0.76295 0.76514 1.21165 1.19898 1.20971 1.70742 1.22249 1.04920 1.21151 1.21088 0.83798 0.91438 1.07612 1.20224 0.97414 0.90967 1.00603 1.20854 0.96571 0.95133 1.01805 1.20609 0.92193 0.99389 1.05903 1.21478 1.00906 0.81262 1.02761 1.42720 1.09184 1.05115 1.46651 0.91685 0.92610 0.89310 0.92948 0.96184 0.92479 0.92272 0.83749 0.84744 0.84015 0.82914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.00 9.94 36.01 0.36 -0.64 16 2 C -0.10 -1.92 7.03 -81.47 -0.57 -2.49 16 3 C 0.13 3.11 5.50 -82.98 -0.46 2.66 16 4 C 0.09 2.14 2.23 -92.92 -0.21 1.94 16 5 H 0.03 0.80 5.42 -51.93 -0.28 0.52 16 6 C -0.14 -3.34 8.85 37.16 0.33 -3.01 16 7 C -0.58 -17.14 8.81 -34.44 -0.30 -17.44 16 8 H 0.06 1.90 7.99 -52.49 -0.42 1.48 16 9 C 0.03 0.83 5.29 -17.82 -0.09 0.74 16 10 N -0.91 -28.67 13.70 55.43 0.76 -27.91 16 11 Si 1.04 25.23 26.29 -169.99 -4.47 20.76 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.07 5.76 56.52 0.33 -5.75 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 15 N -0.47 -11.38 11.32 -9.01 -0.10 -11.48 16 16 C 0.20 4.06 7.81 -156.05 -1.22 2.84 16 17 C -0.07 -1.11 10.11 -39.36 -0.40 -1.50 16 18 C -0.12 -1.42 10.07 -39.54 -0.40 -1.81 16 19 C -0.16 -1.76 9.99 -39.91 -0.40 -2.16 16 20 C 0.06 0.78 10.85 -16.65 -0.18 0.60 16 21 N -0.36 -6.57 2.94 -58.46 -0.17 -6.75 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.09 1.44 7.13 -51.93 -0.37 1.07 16 25 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 1.36 4.88 -51.93 -0.25 1.11 16 28 H 0.27 8.51 8.73 -40.82 -0.36 8.16 16 29 H 0.14 1.98 8.06 -52.48 -0.42 1.55 16 30 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 32 H 0.15 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 269.65 15.07 4.06 4.06 Total: -1.00 -34.61 269.65 -7.40 -42.01 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -3.94 Total: -0.41 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -3.54 Total: -20.28 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.48 Total: -46.14 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -4.47 Total: 20.76 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -34.61 -7.40 -42.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260362134.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.384 kcal (2) G-P(sol) polarization free energy of solvation -34.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds