Wall clock time and date at job start Mon Mar 30 2020 03:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35104 * 126.40983 * 2 1 4 4 C 1.50701 * 125.68458 * 0.02562 * 3 2 1 5 5 H 1.09000 * 109.47592 * 359.97438 * 4 3 2 6 6 C 1.53004 * 109.47095 * 239.99871 * 4 3 2 7 7 C 1.50702 * 109.47102 * 120.00110 * 4 3 2 8 8 H 1.08001 * 120.00346 * 5.61851 * 7 4 3 9 9 C 1.37879 * 119.99922 * 185.62297 * 7 4 3 10 10 N 1.31510 * 120.00521 * 197.53537 * 9 7 4 11 11 Si 1.86803 * 119.99931 * 17.54048 * 9 7 4 12 12 H 1.48498 * 109.47171 * 180.02562 * 11 9 7 13 13 H 1.48498 * 109.47228 * 299.99717 * 11 9 7 14 14 H 1.48499 * 109.47495 * 60.00007 * 11 9 7 15 15 N 1.33506 * 108.62812 * 180.26926 * 3 2 1 16 16 C 1.32559 * 109.15617 * 359.60232 * 15 3 2 17 17 C 1.40936 * 132.32721 * 180.14578 * 16 15 3 18 18 C 1.36025 * 119.33145 * 180.26910 * 17 16 15 19 19 C 1.40472 * 119.69060 * 0.02562 * 18 17 16 20 20 C 1.34952 * 120.29766 * 0.02562 * 19 18 17 21 21 N 1.36481 * 120.61339 * 359.97438 * 20 19 18 22 22 H 1.09003 * 109.46743 * 90.00541 * 1 2 3 23 23 H 1.09001 * 109.47147 * 209.99900 * 1 2 3 24 24 H 1.08994 * 109.47341 * 330.00885 * 1 2 3 25 25 H 1.09001 * 109.46965 * 306.26517 * 6 4 3 26 26 H 1.08996 * 109.46770 * 66.26256 * 6 4 3 27 27 H 1.08999 * 109.47260 * 186.26961 * 6 4 3 28 28 H 0.97006 * 119.99204 * 354.87040 * 10 9 7 29 29 H 1.08007 * 120.33960 * 0.24908 * 17 16 15 30 30 H 1.07995 * 120.15897 * 179.97438 * 18 17 16 31 31 H 1.08003 * 119.85154 * 179.97438 * 19 18 17 32 32 H 1.08012 * 119.69411 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3090 1.0873 0.0000 4 6 1.8456 2.5213 0.0005 5 1 0.7560 2.5512 0.0005 6 6 2.3747 3.2287 -1.2487 7 6 2.3677 3.2174 1.2310 8 1 3.0477 2.7039 1.8945 9 6 1.9770 4.5100 1.5098 10 7 2.6689 5.2374 2.3593 11 14 0.4648 5.2280 0.6810 12 1 0.2607 6.6234 1.1464 13 1 0.6570 5.2212 -0.7915 14 1 -0.7254 4.4108 1.0286 15 7 3.5802 0.6796 -0.0059 16 6 3.6121 -0.6456 -0.0011 17 6 4.6765 -1.5693 -0.0012 18 6 4.4025 -2.9017 -0.0008 19 6 3.0671 -3.3374 -0.0009 20 6 2.0584 -2.4409 -0.0018 21 7 2.3193 -1.1012 -0.0022 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 3.4559 3.1030 -1.3069 26 1 1.9105 2.7964 -2.1350 27 1 2.1349 4.2906 -1.1940 28 1 3.4092 4.8419 2.8457 29 1 5.6995 -1.2229 -0.0019 30 1 5.2078 -3.6212 -0.0013 31 1 2.8466 -4.3947 -0.0010 32 1 1.0352 -2.7867 -0.0023 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260362134.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:32 Heat of formation + Delta-G solvation = 55.149568 kcal Electronic energy + Delta-G solvation = -15647.992806 eV Core-core repulsion = 13187.553500 eV Total energy + Delta-G solvation = -2460.439306 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.69206 -38.59781 -36.07408 -34.79913 -33.53029 -31.60447 -30.53789 -27.34173 -26.76752 -24.79656 -23.55875 -22.50714 -20.64787 -19.55501 -18.00584 -17.69951 -16.93755 -16.48534 -15.94887 -15.58992 -15.11459 -14.57121 -14.35105 -14.03210 -13.88503 -13.50894 -13.21631 -13.07053 -12.80642 -12.46305 -12.39109 -12.28227 -11.77623 -11.73710 -11.54822 -11.00705 -10.81837 -10.36262 -9.50142 -8.75015 -8.56772 -6.33021 -0.07327 0.40241 1.48566 1.57770 1.73886 1.77246 2.01938 2.53978 2.67267 3.07640 3.41902 3.61679 3.87192 4.07237 4.21937 4.23521 4.35244 4.53689 4.64141 4.73349 4.78147 4.86783 4.98494 5.02235 5.10948 5.21207 5.25994 5.33108 5.57716 5.70023 5.83176 6.00800 6.08517 6.35095 6.57433 7.14074 7.44927 8.63828 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.041280 B = 0.007581 C = 0.006975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.130033 B = 3692.364919 C = 4013.447430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.097 4.097 3 C 0.074 3.926 4 C 0.086 3.914 5 H 0.054 0.946 6 C -0.132 4.132 7 C -0.583 4.583 8 H -0.003 1.003 9 C -0.026 4.026 10 N -0.940 5.940 11 Si 1.087 2.913 12 H -0.289 1.289 13 H -0.239 1.239 14 H -0.251 1.251 15 N -0.542 5.542 16 C 0.186 3.814 17 C -0.117 4.117 18 C -0.081 4.081 19 C -0.142 4.142 20 C 0.041 3.959 21 N -0.366 5.366 22 H 0.089 0.911 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.025 0.975 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.245 0.755 29 H 0.147 0.853 30 H 0.181 0.819 31 H 0.197 0.803 32 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.298 -20.033 -8.073 22.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.208 4.208 3 C -0.057 4.057 4 C 0.066 3.934 5 H 0.072 0.928 6 C -0.190 4.190 7 C -0.622 4.622 8 H 0.016 0.984 9 C -0.222 4.222 10 N -0.576 5.576 11 Si 0.906 3.094 12 H -0.215 1.215 13 H -0.163 1.163 14 H -0.175 1.175 15 N -0.263 5.263 16 C -0.057 4.057 17 C -0.137 4.137 18 C -0.105 4.105 19 C -0.163 4.163 20 C -0.080 4.080 21 N -0.039 5.039 22 H 0.107 0.893 23 H 0.105 0.895 24 H 0.094 0.906 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.164 0.836 30 H 0.198 0.802 31 H 0.214 0.786 32 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -5.570 -18.123 -8.228 20.668 hybrid contribution 1.251 -1.328 0.900 2.034 sum -4.319 -19.451 -7.328 21.229 Atomic orbital electron populations 1.20233 0.83912 1.04031 1.03758 1.21433 0.96094 0.84369 1.18950 1.21121 0.88267 0.96638 0.99688 1.17557 0.95888 0.85821 0.94096 0.92828 1.22010 0.99748 1.00210 0.97036 1.21958 1.29472 1.01356 1.09365 0.98443 1.27506 1.03158 0.94095 0.97408 1.70999 1.20251 1.36925 1.29462 0.83608 0.72637 0.75692 0.77502 1.21512 1.16321 1.17487 1.70540 1.23420 1.07935 1.24440 1.21616 0.85939 0.90903 1.07230 1.20511 0.96705 0.92175 1.04333 1.21507 0.98686 0.93995 0.96311 1.21361 0.90982 1.01605 1.02329 1.22421 1.03868 0.79249 1.02496 1.42849 1.08013 1.06650 1.46352 0.89272 0.89485 0.90595 0.95572 0.92914 0.92787 0.94636 0.83574 0.80206 0.78641 0.79050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.74 9.94 71.24 0.71 -1.03 16 2 C -0.10 -3.81 7.03 41.06 0.29 -3.52 16 3 C 0.07 3.68 5.50 41.58 0.23 3.91 16 4 C 0.09 4.46 2.23 -12.28 -0.03 4.43 16 5 H 0.05 2.52 5.42 -2.39 -0.01 2.50 16 6 C -0.13 -6.38 8.85 71.98 0.64 -5.75 16 7 C -0.58 -36.61 8.81 25.60 0.23 -36.38 16 8 H 0.00 -0.21 7.99 -2.91 -0.02 -0.24 16 9 C -0.03 -1.58 5.29 84.66 0.45 -1.13 16 10 N -0.94 -62.75 13.70 21.45 0.29 -62.46 16 11 Si 1.09 50.59 26.29 68.60 1.80 52.40 16 12 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 13 H -0.24 -9.81 5.76 99.48 0.57 -9.24 16 14 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 15 N -0.54 -27.92 11.32 -182.41 -2.06 -29.98 16 16 C 0.19 7.62 7.81 134.11 1.05 8.67 16 17 C -0.12 -3.52 10.11 22.42 0.23 -3.29 16 18 C -0.08 -1.56 10.07 22.30 0.22 -1.33 16 19 C -0.14 -2.29 9.99 22.06 0.22 -2.07 16 20 C 0.04 0.91 10.85 83.21 0.90 1.81 16 21 N -0.37 -12.73 2.94 -338.87 -1.00 -13.73 16 22 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.08 2.33 7.13 -2.39 -0.02 2.31 16 25 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.05 2.56 4.88 -2.39 -0.01 2.55 16 28 H 0.24 16.92 8.73 -92.70 -0.81 16.11 16 29 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16 30 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 31 H 0.20 1.16 8.06 -2.91 -0.02 1.14 16 32 H 0.19 2.64 8.06 -2.90 -0.02 2.61 16 Total: -1.00 -86.04 269.65 5.11 -80.93 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.94 Total: 8.52 kcal Atomic # 6 Polarization: -40.82 SS G_CDS: 5.13 Total: -35.69 kcal Atomic # 7 Polarization: -103.40 SS G_CDS: -2.77 Total: -106.17 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 1.80 Total: 52.40 kcal Total: -86.04 5.11 -80.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260362134.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.082 kcal (2) G-P(sol) polarization free energy of solvation -86.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds