Wall clock time and date at job start Mon Mar 30 2020 03:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35100 * 126.41103 * 2 1 4 4 C 1.50706 * 125.68803 * 0.02562 * 3 2 1 5 5 H 1.08997 * 109.46477 * 359.71432 * 4 3 2 6 6 C 1.53001 * 109.47218 * 119.71472 * 4 3 2 7 7 C 1.50697 * 109.47142 * 239.71688 * 4 3 2 8 8 H 1.08000 * 120.00123 * 359.97438 * 7 4 3 9 9 C 1.37880 * 119.99925 * 179.97438 * 7 4 3 10 10 N 1.31506 * 119.99879 * 0.02562 * 9 7 4 11 11 Si 1.86800 * 119.99942 * 179.97438 * 9 7 4 12 12 H 1.48506 * 109.46570 * 90.00200 * 11 9 7 13 13 H 1.48493 * 109.47172 * 210.00070 * 11 9 7 14 14 H 1.48499 * 109.47134 * 330.00642 * 11 9 7 15 15 N 1.33519 * 108.63049 * 179.73946 * 3 2 1 16 16 C 1.32564 * 109.15580 * 0.23080 * 15 3 2 17 17 C 1.40932 * 132.32946 * 180.02562 * 16 15 3 18 18 C 1.36019 * 119.33082 * 179.97438 * 17 16 15 19 19 C 1.40474 * 119.69009 * 359.97438 * 18 17 16 20 20 C 1.34955 * 120.30272 * 359.97438 * 19 18 17 21 21 N 1.36480 * 120.60488 * 0.04332 * 20 19 18 22 22 H 1.09002 * 109.46695 * 89.99834 * 1 2 3 23 23 H 1.09000 * 109.47091 * 209.99516 * 1 2 3 24 24 H 1.08999 * 109.47151 * 330.00109 * 1 2 3 25 25 H 1.09001 * 109.47185 * 60.00088 * 6 4 3 26 26 H 1.09002 * 109.46875 * 180.02562 * 6 4 3 27 27 H 1.09001 * 109.47117 * 300.00222 * 6 4 3 28 28 H 0.97000 * 120.00242 * 179.97438 * 10 9 7 29 29 H 1.08004 * 120.33145 * 359.94405 * 17 16 15 30 30 H 1.07995 * 120.15826 * 179.97438 * 18 17 16 31 31 H 1.08001 * 119.84815 * 180.02562 * 19 18 17 32 32 H 1.07994 * 119.69229 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3089 1.0873 0.0000 4 6 1.8457 2.5214 0.0005 5 1 0.7561 2.5511 -0.0042 6 6 2.3698 3.2261 1.2534 7 6 2.3726 3.2199 -1.2264 8 1 2.9823 2.6796 -1.9354 9 6 2.0763 4.5488 -1.4437 10 7 1.3343 5.2068 -0.5801 11 14 2.7301 5.4150 -2.9642 12 1 1.7531 5.2725 -4.0735 13 1 2.9326 6.8552 -2.6649 14 1 4.0242 4.8055 -3.3631 15 7 3.5803 0.6795 0.0058 16 6 3.6121 -0.6457 0.0044 17 6 4.6765 -1.5695 0.0090 18 6 4.4025 -2.9018 0.0066 19 6 3.0670 -3.3374 0.0000 20 6 2.0583 -2.4409 -0.0033 21 7 2.3193 -1.1013 -0.0012 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 3.4594 3.1963 1.2581 26 1 2.0343 4.2633 1.2539 27 1 1.9886 2.7208 2.1408 28 1 1.1261 6.1419 -0.7328 29 1 5.6994 -1.2229 0.0140 30 1 5.2078 -3.6213 0.0096 31 1 2.8465 -4.3947 -0.0015 32 1 1.0352 -2.7867 -0.0079 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260362137.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:33 Heat of formation + Delta-G solvation = 58.199055 kcal Electronic energy + Delta-G solvation = -15593.478845 eV Core-core repulsion = 13133.171774 eV Total energy + Delta-G solvation = -2460.307071 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.62008 -38.51039 -36.01178 -34.73638 -33.11910 -31.41678 -30.35242 -27.30673 -27.17704 -24.78132 -23.50932 -22.51302 -20.73250 -18.55889 -17.81071 -17.56391 -16.82645 -16.74363 -16.10968 -15.64526 -14.74466 -14.67925 -14.15870 -13.88647 -13.58106 -13.39991 -13.04323 -12.99479 -12.85587 -12.52426 -12.41965 -12.18192 -12.14079 -11.74373 -11.71580 -11.07389 -10.66094 -10.46958 -9.37328 -8.54584 -8.09405 -6.21070 -0.01619 0.46181 1.38114 1.39914 1.51052 1.79955 2.07544 2.45098 2.74204 3.16767 3.47661 3.69463 3.91781 4.13211 4.26935 4.29553 4.48163 4.69670 4.74496 4.75205 4.91533 5.05633 5.09760 5.13220 5.22372 5.31372 5.39159 5.54991 5.72703 5.79719 5.87700 6.06735 6.31095 6.44387 6.81942 7.21406 7.44363 8.95415 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.036579 B = 0.007273 C = 0.006800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.273812 B = 3848.924527 C = 4116.380767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.102 4.102 3 C 0.076 3.924 4 C 0.112 3.888 5 H 0.030 0.970 6 C -0.113 4.113 7 C -0.514 4.514 8 H 0.033 0.967 9 C 0.017 3.983 10 N -0.914 5.914 11 Si 0.954 3.046 12 H -0.270 1.270 13 H -0.275 1.275 14 H -0.281 1.281 15 N -0.536 5.536 16 C 0.187 3.813 17 C -0.113 4.113 18 C -0.083 4.083 19 C -0.143 4.143 20 C 0.039 3.961 21 N -0.366 5.366 22 H 0.071 0.929 23 H 0.090 0.910 24 H 0.073 0.927 25 H 0.017 0.983 26 H 0.067 0.933 27 H 0.020 0.980 28 H 0.264 0.736 29 H 0.150 0.850 30 H 0.181 0.819 31 H 0.195 0.805 32 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.138 -18.772 1.628 18.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.213 4.213 3 C -0.056 4.056 4 C 0.093 3.907 5 H 0.048 0.952 6 C -0.171 4.171 7 C -0.552 4.552 8 H 0.051 0.949 9 C -0.181 4.181 10 N -0.554 5.554 11 Si 0.780 3.220 12 H -0.196 1.196 13 H -0.200 1.200 14 H -0.206 1.206 15 N -0.257 5.257 16 C -0.056 4.056 17 C -0.134 4.134 18 C -0.106 4.106 19 C -0.163 4.163 20 C -0.082 4.082 21 N -0.039 5.039 22 H 0.090 0.910 23 H 0.109 0.891 24 H 0.092 0.908 25 H 0.036 0.964 26 H 0.085 0.915 27 H 0.039 0.961 28 H 0.073 0.927 29 H 0.168 0.832 30 H 0.198 0.802 31 H 0.212 0.788 32 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 0.656 -18.039 1.664 18.128 hybrid contribution -0.183 0.622 -0.727 0.974 sum 0.473 -17.417 0.938 17.449 Atomic orbital electron populations 1.20121 0.84541 1.03774 1.02940 1.21356 0.95862 0.84600 1.19526 1.21401 0.88245 0.96962 0.98949 1.17185 0.94956 0.84178 0.94380 0.95218 1.21503 0.98048 1.01939 0.95593 1.21145 1.31642 0.95923 1.06506 0.94890 1.25628 0.95381 0.97683 0.99441 1.69967 1.38600 1.10251 1.36571 0.85619 0.78560 0.77817 0.80021 1.19565 1.20015 1.20600 1.70562 1.23057 1.07694 1.24422 1.21677 0.85769 0.91039 1.07085 1.20520 0.96758 0.92018 1.04062 1.21498 0.98524 0.94122 0.96500 1.21338 0.91075 1.01471 1.02433 1.22379 1.03765 0.79380 1.02683 1.42833 1.08124 1.06508 1.46446 0.90992 0.89123 0.90790 0.96409 0.91453 0.96096 0.92665 0.83207 0.80176 0.78806 0.79440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.78 9.94 71.24 0.71 -1.08 16 2 C -0.10 -4.23 7.03 41.05 0.29 -3.94 16 3 C 0.08 3.87 5.50 41.58 0.23 4.10 16 4 C 0.11 6.30 2.65 -12.28 -0.03 6.27 16 5 H 0.03 1.70 6.77 -2.39 -0.02 1.68 16 6 C -0.11 -6.20 8.95 71.98 0.64 -5.55 16 7 C -0.51 -31.35 8.55 25.60 0.22 -31.13 16 8 H 0.03 2.10 7.74 -2.91 -0.02 2.08 16 9 C 0.02 1.01 5.30 84.66 0.45 1.45 16 10 N -0.91 -54.33 11.32 21.45 0.24 -54.09 16 11 Si 0.95 46.53 29.54 68.60 2.03 48.55 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 14 H -0.28 -13.86 7.11 99.48 0.71 -13.16 16 15 N -0.54 -27.46 11.32 -182.40 -2.06 -29.52 16 16 C 0.19 7.64 7.81 134.10 1.05 8.69 16 17 C -0.11 -3.34 10.11 22.41 0.23 -3.11 16 18 C -0.08 -1.57 10.07 22.30 0.22 -1.34 16 19 C -0.14 -2.35 9.99 22.06 0.22 -2.13 16 20 C 0.04 0.91 10.85 83.21 0.90 1.81 16 21 N -0.37 -13.08 2.94 -338.88 -1.00 -14.08 16 22 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 23 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 24 H 0.07 2.52 7.14 -2.39 -0.02 2.50 16 25 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.07 3.89 6.07 -2.39 -0.01 3.88 16 27 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 29 H 0.15 4.04 8.06 -2.91 -0.02 4.01 16 30 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 31 H 0.19 1.26 8.06 -2.91 -0.02 1.23 16 32 H 0.19 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -77.54 274.01 5.44 -72.09 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: 1.11 Total: 3.01 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 5.13 Total: -25.96 kcal Atomic # 7 Polarization: -94.88 SS G_CDS: -2.82 Total: -97.70 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Total: -77.54 5.44 -72.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260362137.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.293 kcal (2) G-P(sol) polarization free energy of solvation -77.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds