Wall clock time and date at job start Mon Mar 30 2020 03:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34936 * 119.66688 * 2 1 4 4 C 1.40476 * 120.43163 * 180.02562 * 3 2 1 5 5 C 1.36064 * 119.59031 * 359.97438 * 4 3 2 6 6 C 1.40797 * 119.22315 * 0.02562 * 5 4 3 7 7 C 1.38938 * 132.96059 * 180.33734 * 6 5 4 8 8 C 1.38543 * 107.56385 * 180.11361 * 7 6 5 9 9 C 1.50706 * 125.49150 * 179.83894 * 8 7 6 10 10 H 1.08998 * 109.46456 * 204.71246 * 9 8 7 11 11 C 1.52997 * 109.47238 * 324.71412 * 9 8 7 12 12 C 1.50697 * 109.47178 * 84.71938 * 9 8 7 13 13 H 1.07998 * 120.00039 * 359.97438 * 12 9 8 14 14 C 1.37880 * 119.99815 * 179.97438 * 12 9 8 15 15 N 1.31517 * 119.99524 * 179.97438 * 14 12 9 16 16 Si 1.86794 * 120.00267 * 359.97438 * 14 12 9 17 17 H 1.48506 * 109.46589 * 89.99875 * 16 14 12 18 18 H 1.48490 * 109.47303 * 209.99928 * 16 14 12 19 19 H 1.48497 * 109.46869 * 330.00523 * 16 14 12 20 20 N 1.31483 * 109.01133 * 359.57237 * 8 7 6 21 21 N 1.36535 * 119.67515 * 180.02562 * 2 1 3 22 22 H 1.09004 * 109.46870 * 269.97522 * 1 2 3 23 23 H 1.09003 * 109.47427 * 29.97283 * 1 2 3 24 24 H 1.09004 * 109.47063 * 149.97762 * 1 2 3 25 25 H 1.08003 * 119.78635 * 0.02871 * 3 2 1 26 26 H 1.08003 * 120.20548 * 180.02562 * 4 3 2 27 27 H 1.07999 * 120.38651 * 180.02562 * 5 4 3 28 28 H 1.07999 * 126.21373 * 359.97438 * 7 6 5 29 29 H 1.09002 * 109.47153 * 180.02562 * 11 9 8 30 30 H 1.09001 * 109.46832 * 60.00314 * 11 9 8 31 31 H 1.09004 * 109.47261 * 300.00295 * 11 9 8 32 32 H 0.97001 * 119.99599 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1748 1.1725 0.0000 4 6 3.5794 1.1912 -0.0005 5 6 4.2670 0.0171 -0.0005 6 6 3.5541 -1.1970 -0.0005 7 6 3.9514 -2.5283 0.0054 8 6 2.8053 -3.3067 -0.0007 9 6 2.7709 -4.8134 -0.0007 10 1 1.8316 -5.1552 -0.4354 11 6 3.9409 -5.3502 -0.8276 12 6 2.8825 -5.3184 1.4147 13 1 2.9701 -4.6185 2.2325 14 6 2.8728 -6.6742 1.6656 15 7 2.9707 -7.1149 2.9009 16 14 2.7206 -7.8848 0.2513 17 1 4.0748 -8.2381 -0.2456 18 1 2.0304 -9.1122 0.7224 19 1 1.9360 -7.2663 -0.8474 20 7 1.7526 -2.5190 -0.0006 21 7 2.1829 -1.1863 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3634 0.8902 -0.5134 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6259 2.1026 0.0005 26 1 4.1103 2.1318 -0.0001 27 1 5.3470 0.0165 -0.0005 28 1 4.9688 -2.8905 0.0113 29 1 3.9157 -6.4400 -0.8280 30 1 4.8801 -5.0083 -0.3928 31 1 3.8601 -4.9849 -1.8514 32 1 2.9635 -8.0687 3.0775 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260382177.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:07 Heat of formation + Delta-G solvation = 98.976560 kcal Electronic energy + Delta-G solvation = -15441.554418 eV Core-core repulsion = 12983.015593 eV Total energy + Delta-G solvation = -2458.538825 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.50997 -37.34483 -34.31058 -33.43460 -31.60390 -29.66034 -28.84367 -26.79380 -25.10282 -23.17537 -22.21726 -21.03054 -18.90644 -16.97564 -16.60750 -16.00275 -15.36731 -15.28155 -14.62680 -13.94719 -13.59614 -13.07335 -12.89241 -12.75394 -12.43782 -12.21686 -11.81970 -11.60029 -11.39220 -11.19189 -10.90419 -10.46667 -10.25919 -9.84672 -9.77164 -9.51446 -9.22668 -8.57037 -8.47671 -7.06477 -6.07369 -4.07650 1.06186 1.51918 2.73567 3.27992 3.38983 3.41216 3.42021 3.74713 4.40357 4.45370 4.81640 5.01808 5.18410 5.23919 5.25526 5.46665 5.52023 5.62008 5.91891 6.02143 6.03101 6.24792 6.34758 6.35968 6.45693 6.53481 6.61272 6.80346 6.94516 7.24506 7.33298 7.48825 7.67151 8.31354 8.49495 8.95910 9.51663 11.05594 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.042180 B = 0.006811 C = 0.006505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.656645 B = 4109.940311 C = 4303.110575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.153 3.847 3 C -0.193 4.193 4 C -0.091 4.091 5 C -0.119 4.119 6 C 0.088 3.912 7 C -0.270 4.270 8 C 0.162 3.838 9 C 0.078 3.922 10 H 0.045 0.955 11 C -0.143 4.143 12 C -0.505 4.505 13 H 0.075 0.925 14 C 0.073 3.927 15 N -0.897 5.897 16 Si 0.888 3.112 17 H -0.277 1.277 18 H -0.296 1.296 19 H -0.265 1.265 20 N -0.324 5.324 21 N -0.284 5.284 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.144 0.856 26 H 0.132 0.868 27 H 0.140 0.860 28 H 0.151 0.849 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.033 0.967 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.021 15.104 -7.702 16.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.045 3.955 3 C -0.215 4.215 4 C -0.114 4.114 5 C -0.139 4.139 6 C -0.029 4.029 7 C -0.299 4.299 8 C 0.005 3.995 9 C 0.057 3.943 10 H 0.063 0.937 11 C -0.201 4.201 12 C -0.544 4.544 13 H 0.093 0.907 14 C -0.129 4.129 15 N -0.535 5.535 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.223 1.223 19 H -0.190 1.190 20 N -0.147 5.147 21 N -0.052 5.052 22 H 0.101 0.899 23 H 0.101 0.899 24 H 0.101 0.899 25 H 0.162 0.838 26 H 0.150 0.850 27 H 0.158 0.842 28 H 0.169 0.831 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.306 14.864 -7.582 16.737 hybrid contribution 0.947 -0.685 -0.486 1.265 sum -0.359 14.179 -8.068 16.318 Atomic orbital electron populations 1.20866 0.88229 1.04178 1.03879 1.20101 0.95203 0.82487 0.97723 1.20417 0.94721 0.96078 1.10298 1.20964 0.93763 0.98093 0.98609 1.20513 1.00244 0.89567 1.03559 1.19605 0.84046 0.95945 1.03342 1.21294 1.00333 0.88763 1.19469 1.22687 0.89334 0.97577 0.89935 1.17863 0.95835 0.82624 0.97989 0.93701 1.22129 1.00361 0.99778 0.97792 1.20743 1.51082 0.92604 0.89977 0.90707 1.24934 0.94337 0.98021 0.95582 1.69883 1.50180 1.14508 1.18947 0.86842 0.78182 0.80435 0.82781 1.20349 1.22340 1.18985 1.77906 1.21626 0.82303 1.32878 1.46308 1.05328 1.05737 1.47777 0.89871 0.89916 0.89861 0.83796 0.84961 0.84223 0.83127 0.93580 0.92208 0.94786 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.04 36.00 0.36 -1.01 16 2 C 0.15 2.30 6.81 -81.67 -0.56 1.75 16 3 C -0.19 -2.31 9.58 -39.91 -0.38 -2.69 16 4 C -0.09 -1.07 10.07 -39.52 -0.40 -1.47 16 5 C -0.12 -1.69 10.11 -39.40 -0.40 -2.09 16 6 C 0.09 1.64 6.81 -84.27 -0.57 1.07 16 7 C -0.27 -5.61 10.06 -39.21 -0.39 -6.00 16 8 C 0.16 3.81 6.01 -82.63 -0.50 3.31 16 9 C 0.08 1.94 2.35 -92.92 -0.22 1.72 16 10 H 0.05 1.15 7.20 -51.93 -0.37 0.78 16 11 C -0.14 -3.13 8.26 37.16 0.31 -2.82 16 12 C -0.51 -14.65 9.13 -34.44 -0.31 -14.96 16 13 H 0.07 2.40 7.98 -52.49 -0.42 1.98 16 14 C 0.07 2.13 5.45 -17.82 -0.10 2.03 16 15 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 16 Si 0.89 21.94 24.38 -169.99 -4.14 17.80 16 17 H -0.28 -6.56 6.87 56.52 0.39 -6.17 16 18 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 19 H -0.26 -6.29 6.53 56.52 0.37 -5.93 16 20 N -0.32 -7.43 12.42 33.51 0.42 -7.01 16 21 N -0.28 -5.54 3.90 -7.01 -0.03 -5.57 16 22 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 24 H 0.08 1.14 8.06 -51.93 -0.42 0.72 16 25 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 26 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 27 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 28 H 0.15 2.85 7.38 -52.49 -0.39 2.46 16 29 H 0.05 1.03 3.28 -51.93 -0.17 0.86 16 30 H 0.06 1.24 7.26 -51.93 -0.38 0.87 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 267.81 15.07 4.04 4.04 Total: -1.00 -33.28 267.81 -5.97 -39.24 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -3.86 Total: -0.42 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: -3.16 Total: -21.17 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 1.16 Total: -39.48 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.14 Total: 17.80 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.28 -5.97 -39.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260382177.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.219 kcal (2) G-P(sol) polarization free energy of solvation -33.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds