Wall clock time and date at job start Mon Mar 30 2020 03:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34936 * 119.66688 * 2 1 4 4 C 1.40476 * 120.43163 * 180.02562 * 3 2 1 5 5 C 1.36064 * 119.59031 * 359.97438 * 4 3 2 6 6 C 1.40797 * 119.22315 * 0.02562 * 5 4 3 7 7 C 1.38938 * 132.96059 * 180.33734 * 6 5 4 8 8 C 1.38543 * 107.56385 * 180.11361 * 7 6 5 9 9 C 1.50706 * 125.49150 * 179.83894 * 8 7 6 10 10 H 1.08998 * 109.46456 * 204.71246 * 9 8 7 11 11 C 1.52997 * 109.47238 * 324.71412 * 9 8 7 12 12 C 1.50697 * 109.47178 * 84.71938 * 9 8 7 13 13 H 1.07998 * 120.00039 * 359.97438 * 12 9 8 14 14 C 1.37880 * 119.99815 * 179.97438 * 12 9 8 15 15 N 1.31517 * 119.99524 * 179.97438 * 14 12 9 16 16 Si 1.86794 * 120.00267 * 359.97438 * 14 12 9 17 17 H 1.48506 * 109.46589 * 89.99875 * 16 14 12 18 18 H 1.48490 * 109.47303 * 209.99928 * 16 14 12 19 19 H 1.48497 * 109.46869 * 330.00523 * 16 14 12 20 20 N 1.31483 * 109.01133 * 359.57237 * 8 7 6 21 21 N 1.36535 * 119.67515 * 180.02562 * 2 1 3 22 22 H 1.09004 * 109.46870 * 269.97522 * 1 2 3 23 23 H 1.09003 * 109.47427 * 29.97283 * 1 2 3 24 24 H 1.09004 * 109.47063 * 149.97762 * 1 2 3 25 25 H 1.08003 * 119.78635 * 0.02871 * 3 2 1 26 26 H 1.08003 * 120.20548 * 180.02562 * 4 3 2 27 27 H 1.07999 * 120.38651 * 180.02562 * 5 4 3 28 28 H 1.07999 * 126.21373 * 359.97438 * 7 6 5 29 29 H 1.09002 * 109.47153 * 180.02562 * 11 9 8 30 30 H 1.09001 * 109.46832 * 60.00314 * 11 9 8 31 31 H 1.09004 * 109.47261 * 300.00295 * 11 9 8 32 32 H 0.97001 * 119.99599 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1748 1.1725 0.0000 4 6 3.5794 1.1912 -0.0005 5 6 4.2670 0.0171 -0.0005 6 6 3.5541 -1.1970 -0.0005 7 6 3.9514 -2.5283 0.0054 8 6 2.8053 -3.3067 -0.0007 9 6 2.7709 -4.8134 -0.0007 10 1 1.8316 -5.1552 -0.4354 11 6 3.9409 -5.3502 -0.8276 12 6 2.8825 -5.3184 1.4147 13 1 2.9701 -4.6185 2.2325 14 6 2.8728 -6.6742 1.6656 15 7 2.9707 -7.1149 2.9009 16 14 2.7206 -7.8848 0.2513 17 1 4.0748 -8.2381 -0.2456 18 1 2.0304 -9.1122 0.7224 19 1 1.9360 -7.2663 -0.8474 20 7 1.7526 -2.5190 -0.0006 21 7 2.1829 -1.1863 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3634 0.8902 -0.5134 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6259 2.1026 0.0005 26 1 4.1103 2.1318 -0.0001 27 1 5.3470 0.0165 -0.0005 28 1 4.9688 -2.8905 0.0113 29 1 3.9157 -6.4400 -0.8280 30 1 4.8801 -5.0083 -0.3928 31 1 3.8601 -4.9849 -1.8514 32 1 2.9635 -8.0687 3.0775 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260382177.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:07 Heat of formation + Delta-G solvation = 76.447731 kcal Electronic energy + Delta-G solvation = -15442.531342 eV Core-core repulsion = 12983.015593 eV Total energy + Delta-G solvation = -2459.515749 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.88352 -38.69050 -36.14873 -34.59458 -33.63591 -31.16136 -30.14255 -27.92015 -27.15038 -24.84792 -23.46661 -22.44077 -20.55653 -18.83836 -18.16875 -17.45246 -16.73086 -16.51232 -16.30083 -15.21733 -15.13601 -14.93551 -14.29886 -14.10457 -14.02635 -13.41330 -13.27155 -13.03550 -12.87373 -12.62261 -12.47105 -12.23308 -12.00144 -11.48193 -11.42277 -11.29551 -11.02732 -10.77089 -10.01053 -8.40333 -8.33094 -6.39841 -0.06332 0.25902 1.30591 1.37464 1.44633 1.48643 1.85634 2.30833 2.53822 3.00121 3.28143 3.73757 3.83349 4.09454 4.24539 4.29695 4.47808 4.55157 4.59341 4.65004 4.78663 4.79431 4.88661 4.93666 5.06482 5.07407 5.22276 5.34800 5.46267 5.53793 5.70288 5.75409 6.15216 6.23219 6.62450 6.77727 7.23566 8.83733 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.042180 B = 0.006811 C = 0.006505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.656645 B = 4109.940311 C = 4303.110575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.105 3.895 3 C -0.161 4.161 4 C -0.065 4.065 5 C -0.139 4.139 6 C 0.087 3.913 7 C -0.309 4.309 8 C 0.130 3.870 9 C 0.080 3.920 10 H 0.031 0.969 11 C -0.135 4.135 12 C -0.512 4.512 13 H 0.020 0.980 14 C 0.017 3.983 15 N -0.946 5.946 16 Si 0.956 3.044 17 H -0.253 1.253 18 H -0.293 1.293 19 H -0.251 1.251 20 N -0.372 5.372 21 N -0.288 5.288 22 H 0.083 0.917 23 H 0.127 0.873 24 H 0.055 0.945 25 H 0.196 0.804 26 H 0.186 0.814 27 H 0.167 0.833 28 H 0.156 0.844 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.546 18.321 -9.691 20.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.001 4.001 3 C -0.182 4.182 4 C -0.088 4.088 5 C -0.158 4.158 6 C -0.032 4.032 7 C -0.337 4.337 8 C -0.026 4.026 9 C 0.059 3.941 10 H 0.049 0.951 11 C -0.192 4.192 12 C -0.551 4.551 13 H 0.039 0.961 14 C -0.181 4.181 15 N -0.586 5.586 16 Si 0.781 3.219 17 H -0.178 1.178 18 H -0.221 1.221 19 H -0.175 1.175 20 N -0.197 5.197 21 N -0.055 5.055 22 H 0.102 0.898 23 H 0.145 0.855 24 H 0.074 0.926 25 H 0.213 0.787 26 H 0.203 0.797 27 H 0.185 0.815 28 H 0.173 0.827 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.784 18.093 -9.582 20.489 hybrid contribution 0.740 -1.261 0.226 1.480 sum -0.044 16.832 -9.356 19.257 Atomic orbital electron populations 1.20939 0.86605 1.04993 1.04189 1.21027 0.96996 0.82024 1.00043 1.21211 0.95341 0.96501 1.05170 1.21671 0.93801 0.99156 0.94178 1.20966 1.01792 0.88537 1.04495 1.20138 0.84208 0.96834 1.01979 1.21352 0.99899 0.89903 1.22588 1.22462 0.90819 0.96975 0.92296 1.17680 0.96344 0.84520 0.95551 0.95116 1.22000 0.99058 0.99314 0.98848 1.20876 1.51003 0.92159 0.91066 0.96125 1.25865 0.93641 0.99993 0.98582 1.70037 1.51740 1.15253 1.21571 0.85749 0.79515 0.77337 0.79308 1.17831 1.22093 1.17471 1.77702 1.22310 0.84318 1.35366 1.46509 1.06118 1.05722 1.47121 0.89796 0.85489 0.92599 0.78658 0.79653 0.81521 0.82657 0.93834 0.91806 0.91939 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.46 10.04 71.23 0.71 -1.75 16 2 C 0.11 2.95 6.81 41.07 0.28 3.23 16 3 C -0.16 -2.96 9.58 22.06 0.21 -2.75 16 4 C -0.07 -1.14 10.07 22.31 0.22 -0.92 16 5 C -0.14 -3.48 10.11 22.39 0.23 -3.25 16 6 C 0.09 3.25 6.81 39.11 0.27 3.52 16 7 C -0.31 -13.37 10.06 22.51 0.23 -13.15 16 8 C 0.13 6.45 6.01 42.69 0.26 6.70 16 9 C 0.08 4.17 2.35 -12.29 -0.03 4.14 16 10 H 0.03 1.65 7.20 -2.39 -0.02 1.63 16 11 C -0.13 -5.92 8.26 71.98 0.59 -5.33 16 12 C -0.51 -31.65 9.13 25.60 0.23 -31.41 16 13 H 0.02 1.44 7.98 -2.91 -0.02 1.41 16 14 C 0.02 1.01 5.45 84.65 0.46 1.47 16 15 N -0.95 -61.09 13.96 21.45 0.30 -60.79 16 16 Si 0.96 46.03 24.38 68.60 1.67 47.70 16 17 H -0.25 -11.20 6.87 99.48 0.68 -10.52 16 18 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 19 H -0.25 -11.42 6.53 99.48 0.65 -10.77 16 20 N -0.37 -18.02 12.42 -47.88 -0.59 -18.61 16 21 N -0.29 -11.27 3.90 -176.09 -0.69 -11.96 16 22 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.13 1.61 8.07 -2.39 -0.02 1.59 16 24 H 0.05 1.55 8.06 -2.38 -0.02 1.54 16 25 H 0.20 1.65 8.06 -2.91 -0.02 1.62 16 26 H 0.19 1.42 8.06 -2.91 -0.02 1.40 16 27 H 0.17 3.20 8.06 -2.91 -0.02 3.18 16 28 H 0.16 6.18 7.38 -2.91 -0.02 6.16 16 29 H 0.04 1.90 3.28 -2.39 -0.01 1.89 16 30 H 0.06 2.70 7.26 -2.39 -0.02 2.68 16 31 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 32 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 Total: -1.00 -80.49 267.81 5.39 -75.10 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 1.03 Total: 8.06 kcal Atomic # 6 Polarization: -43.17 SS G_CDS: 3.67 Total: -39.50 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -0.98 Total: -91.36 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.67 Total: 47.70 kcal Total: -80.49 5.39 -75.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260382177.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.547 kcal (2) G-P(sol) polarization free energy of solvation -80.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds