Wall clock time and date at job start Mon Mar 30 2020 03:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30242 * 126.10293 * 2 1 4 4 N 1.39876 * 110.08471 * 179.97438 * 3 2 1 5 5 C 1.46497 * 125.46425 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47595 * 89.96868 * 5 4 3 7 7 H 1.07995 * 119.99847 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00132 * 180.02562 * 6 5 4 9 9 N 1.31522 * 120.00069 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00043 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.46964 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.46955 * 120.00000 * 10 8 6 13 13 H 1.48500 * 109.47105 * 239.99883 * 10 8 6 14 14 C 1.37042 * 109.07779 * 359.97438 * 4 3 2 15 15 C 1.39284 * 133.85325 * 179.97438 * 14 4 3 16 16 C 1.36587 * 119.85245 * 180.02562 * 15 14 4 17 17 C 1.38965 * 120.81501 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.68319 * 180.28310 * 17 16 15 19 19 C 1.36465 * 120.62952 * 0.02562 * 17 16 15 20 20 C 1.39946 * 119.63644 * 359.97438 * 19 17 16 21 21 H 1.09000 * 109.47577 * 270.02891 * 1 2 3 22 22 H 1.08997 * 109.47226 * 30.02943 * 1 2 3 23 23 H 1.09000 * 109.47218 * 150.03246 * 1 2 3 24 24 H 1.08999 * 109.47431 * 209.97037 * 5 4 3 25 25 H 1.08999 * 109.46925 * 329.96604 * 5 4 3 26 26 H 0.96999 * 119.99956 * 180.02562 * 9 8 6 27 27 H 1.08002 * 120.07252 * 0.03879 * 15 14 4 28 28 H 1.08006 * 119.59316 * 180.02562 * 16 15 14 29 29 H 1.09000 * 109.47031 * 269.72548 * 18 17 16 30 30 H 1.08997 * 109.47482 * 29.72628 * 18 17 16 31 31 H 1.08999 * 109.46870 * 149.73215 * 18 17 16 32 32 H 1.08000 * 120.18106 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2744 1.0523 0.0000 4 7 3.6189 0.6663 0.0006 5 6 4.7651 1.5786 0.0013 6 6 5.1570 1.8919 1.4223 7 1 4.6070 1.4554 2.2428 8 6 6.2171 2.7366 1.6748 9 7 6.8866 3.2685 0.6755 10 14 6.7025 3.1254 3.4363 11 1 5.7978 2.4068 4.3691 12 1 8.1030 2.6911 3.6711 13 1 6.5922 4.5880 3.6687 14 6 3.6920 -0.7021 0.0016 15 6 4.7465 -1.6121 0.0020 16 6 4.4872 -2.9532 0.0025 17 6 3.1804 -3.4256 0.0031 18 6 2.9236 -4.9106 0.0101 19 6 2.1273 -2.5576 0.0027 20 6 2.3670 -1.1788 0.0022 21 1 -0.3634 0.0005 1.0276 22 1 -0.3633 0.8897 -0.5143 23 1 -0.3634 -0.8903 -0.5133 24 1 5.6040 1.1085 -0.5117 25 1 4.4955 2.5011 -0.5130 26 1 7.6326 3.8625 0.8532 27 1 5.7668 -1.2581 0.0022 28 1 5.3081 -3.6551 0.0032 29 1 2.8582 -5.2728 -1.0159 30 1 3.7403 -5.4181 0.5232 31 1 1.9864 -5.1147 0.5278 32 1 1.1145 -2.9327 0.0027 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260382489.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:31 Heat of formation + Delta-G solvation = 67.077127 kcal Electronic energy + Delta-G solvation = -15298.995491 eV Core-core repulsion = 12839.073402 eV Total energy + Delta-G solvation = -2459.922088 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.60098 -37.12120 -34.01716 -32.54898 -31.27267 -29.70446 -28.98678 -26.81574 -25.28783 -22.63477 -22.41534 -20.46433 -19.02070 -16.72270 -16.11837 -15.98714 -14.72527 -14.54795 -14.40877 -13.60554 -13.32452 -13.27876 -12.85341 -12.74975 -12.32867 -12.13309 -11.91385 -11.65285 -11.35724 -11.13367 -10.84399 -10.72986 -10.54855 -10.22614 -9.93377 -9.80698 -9.05513 -8.64573 -8.05657 -7.05112 -6.23770 -4.32693 1.51840 2.04883 3.12737 3.20177 3.27761 3.31472 3.41485 4.24964 4.31356 4.96759 5.04633 5.11469 5.21966 5.29438 5.51304 5.60350 5.77362 5.84203 5.87208 5.94774 6.00089 6.06894 6.26601 6.30637 6.49457 6.81952 6.92437 7.01279 7.03339 7.24553 7.40644 7.66497 7.89736 7.97901 8.51358 8.74180 9.33699 10.82223 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026940 B = 0.007540 C = 0.006515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.112170 B = 3712.827109 C = 4296.748503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.055 3.945 3 N -0.243 5.243 4 N -0.362 5.362 5 C 0.263 3.737 6 C -0.536 4.536 7 H 0.063 0.937 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.272 1.272 12 H -0.280 1.280 13 H -0.280 1.280 14 C 0.132 3.868 15 C -0.122 4.122 16 C -0.084 4.084 17 C -0.145 4.145 18 C -0.100 4.100 19 C -0.046 4.046 20 C -0.186 4.186 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.267 0.733 27 H 0.126 0.874 28 H 0.120 0.880 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.803 -12.035 -1.855 14.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.120 4.120 3 N -0.059 5.059 4 N -0.147 5.147 5 C 0.146 3.854 6 C -0.575 4.575 7 H 0.082 0.918 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.196 1.196 12 H -0.206 1.206 13 H -0.206 1.206 14 C 0.013 3.987 15 C -0.144 4.144 16 C -0.105 4.105 17 C -0.147 4.147 18 C -0.157 4.157 19 C -0.066 4.066 20 C -0.194 4.194 21 H 0.091 0.909 22 H 0.090 0.910 23 H 0.091 0.909 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.144 0.856 28 H 0.138 0.862 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.463 -10.452 -1.907 12.984 hybrid contribution 0.591 -0.367 0.969 1.193 sum -6.871 -10.819 -0.938 12.851 Atomic orbital electron populations 1.20056 0.86721 1.02798 1.02568 1.23306 0.96179 0.89048 1.03439 1.76495 0.88615 1.23789 1.17007 1.49214 1.04086 1.02990 1.58414 1.19615 0.78875 0.88172 0.98741 1.21405 1.15327 1.29215 0.91541 0.91840 1.24937 0.95634 0.95106 0.98143 1.69934 1.20804 1.31328 1.30975 0.86309 0.78395 0.78308 0.83737 1.19599 1.20603 1.20588 1.18894 0.95077 0.85594 0.99094 1.19917 0.97660 0.91725 1.05069 1.20453 0.96027 0.94324 0.99648 1.19213 0.93052 0.95394 1.07076 1.20620 1.01651 0.91985 1.01426 1.19992 0.98161 0.90286 0.98206 1.19758 0.92045 0.93937 1.13683 0.90868 0.90966 0.90903 0.93210 0.93052 0.92311 0.85566 0.86181 0.92133 0.92171 0.92266 0.86557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.85 10.48 36.00 0.38 -0.47 16 2 C 0.06 1.07 7.43 -80.20 -0.60 0.47 16 3 N -0.24 -5.64 12.40 34.83 0.43 -5.20 16 4 N -0.36 -8.86 3.63 -59.88 -0.22 -9.08 16 5 C 0.26 7.02 6.12 -5.20 -0.03 6.98 16 6 C -0.54 -15.25 9.39 -34.44 -0.32 -15.57 16 7 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 8 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 9 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 10 Si 0.91 21.54 29.54 -169.99 -5.02 16.52 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 C 0.13 2.90 6.87 -84.17 -0.58 2.32 16 15 C -0.12 -2.35 9.97 -39.79 -0.40 -2.75 16 16 C -0.08 -1.33 9.60 -39.91 -0.38 -1.71 16 17 C -0.15 -2.15 5.84 -104.99 -0.61 -2.76 16 18 C -0.10 -1.07 9.99 36.01 0.36 -0.71 16 19 C -0.05 -0.73 9.68 -39.58 -0.38 -1.11 16 20 C -0.19 -3.61 6.33 -105.21 -0.67 -4.27 16 21 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 25 H 0.05 1.44 8.14 -51.93 -0.42 1.02 16 26 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.13 2.42 8.06 -52.49 -0.42 1.99 16 28 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 31 H 0.06 0.56 8.07 -51.93 -0.42 0.15 16 32 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 282.64 15.07 4.26 4.26 Total: -1.00 -31.07 282.64 -7.33 -38.40 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -4.19 Total: -2.14 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -3.33 Total: -17.86 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.95 Total: -39.18 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.07 -7.33 -38.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260382489.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.474 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds