Wall clock time and date at job start Mon Mar 30 2020 03:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30242 * 126.10293 * 2 1 4 4 N 1.39876 * 110.08471 * 179.97438 * 3 2 1 5 5 C 1.46497 * 125.46425 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47595 * 89.96868 * 5 4 3 7 7 H 1.07995 * 119.99847 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00132 * 180.02562 * 6 5 4 9 9 N 1.31522 * 120.00069 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00043 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.46964 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.46955 * 120.00000 * 10 8 6 13 13 H 1.48500 * 109.47105 * 239.99883 * 10 8 6 14 14 C 1.37042 * 109.07779 * 359.97438 * 4 3 2 15 15 C 1.39284 * 133.85325 * 179.97438 * 14 4 3 16 16 C 1.36587 * 119.85245 * 180.02562 * 15 14 4 17 17 C 1.38965 * 120.81501 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.68319 * 180.28310 * 17 16 15 19 19 C 1.36465 * 120.62952 * 0.02562 * 17 16 15 20 20 C 1.39946 * 119.63644 * 359.97438 * 19 17 16 21 21 H 1.09000 * 109.47577 * 270.02891 * 1 2 3 22 22 H 1.08997 * 109.47226 * 30.02943 * 1 2 3 23 23 H 1.09000 * 109.47218 * 150.03246 * 1 2 3 24 24 H 1.08999 * 109.47431 * 209.97037 * 5 4 3 25 25 H 1.08999 * 109.46925 * 329.96604 * 5 4 3 26 26 H 0.96999 * 119.99956 * 180.02562 * 9 8 6 27 27 H 1.08002 * 120.07252 * 0.03879 * 15 14 4 28 28 H 1.08006 * 119.59316 * 180.02562 * 16 15 14 29 29 H 1.09000 * 109.47031 * 269.72548 * 18 17 16 30 30 H 1.08997 * 109.47482 * 29.72628 * 18 17 16 31 31 H 1.08999 * 109.46870 * 149.73215 * 18 17 16 32 32 H 1.08000 * 120.18106 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2744 1.0523 0.0000 4 7 3.6189 0.6663 0.0006 5 6 4.7651 1.5786 0.0013 6 6 5.1570 1.8919 1.4223 7 1 4.6070 1.4554 2.2428 8 6 6.2171 2.7366 1.6748 9 7 6.8866 3.2685 0.6755 10 14 6.7025 3.1254 3.4363 11 1 5.7978 2.4068 4.3691 12 1 8.1030 2.6911 3.6711 13 1 6.5922 4.5880 3.6687 14 6 3.6920 -0.7021 0.0016 15 6 4.7465 -1.6121 0.0020 16 6 4.4872 -2.9532 0.0025 17 6 3.1804 -3.4256 0.0031 18 6 2.9236 -4.9106 0.0101 19 6 2.1273 -2.5576 0.0027 20 6 2.3670 -1.1788 0.0022 21 1 -0.3634 0.0005 1.0276 22 1 -0.3633 0.8897 -0.5143 23 1 -0.3634 -0.8903 -0.5133 24 1 5.6040 1.1085 -0.5117 25 1 4.4955 2.5011 -0.5130 26 1 7.6326 3.8625 0.8532 27 1 5.7668 -1.2581 0.0022 28 1 5.3081 -3.6551 0.0032 29 1 2.8582 -5.2728 -1.0159 30 1 3.7403 -5.4181 0.5232 31 1 1.9864 -5.1147 0.5278 32 1 1.1145 -2.9327 0.0027 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260382489.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:31 Heat of formation + Delta-G solvation = 48.511507 kcal Electronic energy + Delta-G solvation = -15299.800556 eV Core-core repulsion = 12839.073402 eV Total energy + Delta-G solvation = -2460.727154 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.10449 -38.48185 -35.91271 -34.31578 -32.61455 -31.07722 -30.61200 -28.26407 -26.85769 -24.43916 -23.82643 -21.88928 -20.51919 -18.87702 -17.71823 -17.49485 -16.46228 -16.05069 -15.92754 -15.01037 -14.74681 -14.56846 -14.23589 -14.17648 -13.70615 -13.60492 -13.22586 -13.02143 -12.79723 -12.77845 -12.58853 -12.37885 -12.17558 -11.81071 -11.71682 -11.43955 -10.80446 -10.61269 -9.52532 -8.66172 -8.29694 -6.58012 0.12502 0.67236 1.31001 1.31893 1.44920 1.63785 1.74448 2.28814 2.89086 2.90263 3.59972 3.72338 3.92544 4.09639 4.30641 4.51945 4.60340 4.70561 4.76355 4.83766 4.84499 4.88670 5.03305 5.05604 5.14214 5.22204 5.36465 5.46023 5.52892 5.75532 5.75760 5.79056 6.10653 6.22229 6.54946 6.93788 7.13512 8.67573 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026940 B = 0.007540 C = 0.006515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.112170 B = 3712.827109 C = 4296.748503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.071 3.929 3 N -0.300 5.300 4 N -0.398 5.398 5 C 0.284 3.716 6 C -0.556 4.556 7 H 0.045 0.955 8 C 0.019 3.981 9 N -0.920 5.920 10 Si 0.976 3.024 11 H -0.274 1.274 12 H -0.265 1.265 13 H -0.269 1.269 14 C 0.096 3.904 15 C -0.160 4.160 16 C -0.066 4.066 17 C -0.139 4.139 18 C -0.097 4.097 19 C -0.040 4.040 20 C -0.202 4.202 21 H 0.091 0.909 22 H 0.077 0.923 23 H 0.108 0.892 24 H 0.034 0.966 25 H 0.021 0.979 26 H 0.275 0.725 27 H 0.109 0.891 28 H 0.153 0.847 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.299 -14.980 -0.942 17.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.105 4.105 3 N -0.115 5.115 4 N -0.184 5.184 5 C 0.164 3.836 6 C -0.594 4.594 7 H 0.063 0.937 8 C -0.181 4.181 9 N -0.559 5.559 10 Si 0.799 3.201 11 H -0.199 1.199 12 H -0.189 1.189 13 H -0.194 1.194 14 C -0.020 4.020 15 C -0.182 4.182 16 C -0.086 4.086 17 C -0.141 4.141 18 C -0.153 4.153 19 C -0.060 4.060 20 C -0.210 4.210 21 H 0.110 0.890 22 H 0.096 0.904 23 H 0.127 0.873 24 H 0.051 0.949 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.127 0.873 28 H 0.171 0.829 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -8.964 -13.421 -1.008 16.171 hybrid contribution 0.973 0.353 0.626 1.209 sum -7.991 -13.068 -0.383 15.323 Atomic orbital electron populations 1.20337 0.82407 1.04877 1.04331 1.24350 0.98474 0.88161 0.99491 1.76407 0.88473 1.26133 1.20531 1.48849 1.03974 1.03688 1.61899 1.19002 0.79729 0.87413 0.97428 1.21508 1.15991 1.30082 0.91814 0.93677 1.25836 0.95150 0.94431 1.02728 1.70024 1.21145 1.31532 1.33166 0.85248 0.78441 0.78421 0.77995 1.19893 1.18950 1.19410 1.19464 0.97373 0.84832 1.00341 1.20056 0.96604 0.93255 1.08257 1.20916 0.98140 0.93079 0.96508 1.19787 0.91987 0.97930 1.04379 1.20702 1.03255 0.88320 1.03054 1.20489 1.00680 0.88420 0.96403 1.20164 0.90769 0.95709 1.14359 0.89007 0.90372 0.87338 0.94859 0.96128 0.91625 0.87273 0.82891 0.90386 0.90814 0.90318 0.82364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.49 10.48 71.24 0.75 -0.74 16 2 C 0.07 2.74 7.43 44.78 0.33 3.07 16 3 N -0.30 -14.65 12.40 -43.70 -0.54 -15.20 16 4 N -0.40 -20.93 3.63 -343.37 -1.25 -22.18 16 5 C 0.28 16.46 6.12 85.63 0.52 16.99 16 6 C -0.56 -33.57 9.39 25.60 0.24 -33.33 16 7 H 0.04 2.82 7.81 -2.91 -0.02 2.79 16 8 C 0.02 1.11 5.46 84.65 0.46 1.57 16 9 N -0.92 -54.79 13.29 21.45 0.28 -54.50 16 10 Si 0.98 45.09 29.54 68.60 2.03 47.11 16 11 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 13 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 14 C 0.10 4.42 6.87 39.21 0.27 4.69 16 15 C -0.16 -6.39 9.97 22.14 0.22 -6.17 16 16 C -0.07 -1.97 9.60 22.06 0.21 -1.76 16 17 C -0.14 -3.57 5.84 -20.10 -0.12 -3.69 16 18 C -0.10 -1.54 9.99 71.24 0.71 -0.82 16 19 C -0.04 -1.12 9.68 22.27 0.22 -0.91 16 20 C -0.20 -7.71 6.33 -20.24 -0.13 -7.84 16 21 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 22 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.03 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.02 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 27 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 28 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.02 8.08 -2.39 -0.02 1.00 16 31 H 0.08 1.01 8.07 -2.39 -0.02 0.99 16 32 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -73.05 282.64 5.31 -67.73 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: 1.10 Total: 5.97 kcal Atomic # 6 Polarization: -32.63 SS G_CDS: 3.69 Total: -28.94 kcal Atomic # 7 Polarization: -90.37 SS G_CDS: -1.50 Total: -91.88 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -73.05 5.31 -67.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260382489.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.246 kcal (2) G-P(sol) polarization free energy of solvation -73.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds