Wall clock time and date at job start Mon Mar 30 2020 03:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30894 * 125.31764 * 2 1 4 4 C 1.33405 * 109.87562 * 180.02562 * 3 2 1 5 5 C 1.37994 * 107.45741 * 359.97438 * 4 3 2 6 6 C 1.40966 * 133.70941 * 180.02562 * 5 4 3 7 7 C 1.35883 * 119.17669 * 179.97438 * 6 5 4 8 8 C 1.40813 * 119.77086 * 0.06282 * 7 6 5 9 9 C 1.50704 * 119.68877 * 179.97438 * 8 7 6 10 10 H 1.08997 * 109.46782 * 179.97438 * 9 8 7 11 11 C 1.52993 * 109.47246 * 299.91642 * 9 8 7 12 12 C 1.50703 * 109.46984 * 59.91848 * 9 8 7 13 13 H 1.07997 * 119.99674 * 359.97438 * 12 9 8 14 14 C 1.37876 * 119.99486 * 179.97438 * 12 9 8 15 15 N 1.31507 * 120.00410 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99698 * 179.97438 * 14 12 9 17 17 H 1.48508 * 109.47104 * 59.99887 * 16 14 12 18 18 H 1.48493 * 109.47410 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47169 * 300.00433 * 16 14 12 20 20 C 1.34669 * 120.61787 * 359.91008 * 8 7 6 21 21 N 1.35041 * 125.31384 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.47703 * 269.98008 * 1 2 3 23 23 H 1.09000 * 109.46944 * 29.98141 * 1 2 3 24 24 H 1.09007 * 109.47383 * 149.97761 * 1 2 3 25 25 H 1.07999 * 126.27266 * 179.97438 * 4 3 2 26 26 H 1.07998 * 120.41516 * 359.97438 * 6 5 4 27 27 H 1.08005 * 120.11395 * 180.02562 * 7 6 5 28 28 H 1.08996 * 109.47428 * 179.97438 * 11 9 8 29 29 H 1.09002 * 109.47695 * 300.00247 * 11 9 8 30 30 H 1.09000 * 109.47204 * 59.99679 * 11 9 8 31 31 H 0.97001 * 120.00312 * 179.97438 * 15 14 12 32 32 H 1.08004 * 119.71701 * 180.34328 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2636 1.0680 0.0000 4 6 3.5495 0.7128 -0.0006 5 6 3.5981 -0.6663 -0.0003 6 6 4.6507 -1.6039 -0.0002 7 6 4.3562 -2.9304 0.0005 8 6 3.0114 -3.3481 -0.0002 9 6 2.6869 -4.8198 0.0001 10 1 1.6051 -4.9532 -0.0001 11 6 3.2803 -5.4731 -1.2496 12 6 3.2734 -5.4633 1.2301 13 1 3.8263 -4.8663 1.9403 14 6 3.1042 -6.8141 1.4486 15 7 2.4315 -7.5410 0.5835 16 14 3.8319 -7.6119 2.9729 17 1 3.2568 -6.9773 4.1862 18 1 3.5120 -9.0620 2.9732 19 1 5.3058 -7.4306 2.9708 20 6 2.0126 -2.4447 0.0003 21 7 2.2875 -1.1019 -0.0005 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3634 -0.8898 -0.5142 25 1 4.3973 1.3820 -0.0011 26 1 5.6784 -1.2721 -0.0007 27 1 5.1508 -3.6619 0.0010 28 1 3.0460 -6.5376 -1.2492 29 1 2.8561 -5.0077 -2.1393 30 1 4.3621 -5.3395 -1.2505 31 1 2.3127 -8.4914 0.7370 32 1 0.9864 -2.7812 0.0053 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260410452.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:33 Heat of formation + Delta-G solvation = 69.328555 kcal Electronic energy + Delta-G solvation = -15474.940970 eV Core-core repulsion = 13015.116511 eV Total energy + Delta-G solvation = -2459.824459 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.32222 -37.57081 -34.21292 -33.12999 -31.60831 -30.32471 -28.36176 -26.11531 -25.27997 -23.13872 -22.15917 -21.02836 -19.54940 -17.06531 -16.29821 -15.88316 -15.56098 -15.14741 -14.54765 -14.22628 -13.37450 -12.96090 -12.93301 -12.72750 -12.28493 -12.02459 -11.75109 -11.34102 -11.19736 -10.99648 -10.80073 -10.48228 -10.29083 -10.11552 -9.96571 -9.72174 -9.22645 -8.52480 -8.34702 -6.93634 -6.15695 -4.24014 1.37216 1.83474 3.09616 3.22992 3.28291 3.30972 3.40480 3.99039 4.32398 4.71580 4.97216 5.13710 5.16039 5.33398 5.50625 5.57276 5.65118 5.69369 5.81026 5.99195 6.30803 6.39660 6.60394 6.66693 6.84077 6.91478 6.96650 7.04805 7.19422 7.53173 7.65778 7.74709 7.92225 8.19254 8.27963 8.77813 9.41936 10.89790 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037307 B = 0.006747 C = 0.006518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.350662 B = 4148.812818 C = 4294.936894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.138 3.862 3 N -0.460 5.460 4 C -0.044 4.044 5 C 0.005 3.995 6 C -0.104 4.104 7 C -0.085 4.085 8 C -0.038 4.038 9 C 0.081 3.919 10 H 0.038 0.962 11 C -0.133 4.133 12 C -0.515 4.515 13 H 0.058 0.942 14 C 0.065 3.935 15 N -0.888 5.888 16 Si 0.895 3.105 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.276 1.276 20 C 0.004 3.996 21 N -0.349 5.349 22 H 0.074 0.926 23 H 0.085 0.915 24 H 0.070 0.930 25 H 0.173 0.827 26 H 0.138 0.862 27 H 0.138 0.862 28 H 0.089 0.911 29 H 0.010 0.990 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.203 8.621 -1.993 8.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.117 4.117 3 N -0.175 5.175 4 C -0.199 4.199 5 C -0.106 4.106 6 C -0.124 4.124 7 C -0.106 4.106 8 C -0.040 4.040 9 C 0.062 3.938 10 H 0.056 0.944 11 C -0.191 4.191 12 C -0.553 4.553 13 H 0.076 0.924 14 C -0.137 4.137 15 N -0.526 5.526 16 Si 0.723 3.277 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.115 4.115 21 N -0.018 5.018 22 H 0.092 0.908 23 H 0.103 0.897 24 H 0.089 0.911 25 H 0.190 0.810 26 H 0.156 0.844 27 H 0.156 0.844 28 H 0.107 0.893 29 H 0.029 0.971 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.361 9.234 -2.028 9.461 hybrid contribution 0.779 -1.359 0.891 1.803 sum 0.419 7.875 -1.137 7.967 Atomic orbital electron populations 1.20043 0.85114 1.03484 1.03024 1.22913 0.95400 0.79896 1.13448 1.69813 1.02589 1.27859 1.17263 1.22293 0.94351 0.90500 1.12730 1.19692 0.84347 0.95300 1.11293 1.20465 0.97276 0.91871 1.02754 1.21204 0.97196 0.95011 0.97220 1.20388 0.91595 0.98580 0.93468 1.17839 0.97527 0.83019 0.95458 0.94427 1.21792 0.98426 1.04049 0.94815 1.20985 1.35169 0.93335 1.05767 0.92377 1.24933 0.94959 0.97181 0.96595 1.69855 1.40396 1.07047 1.35282 0.86604 0.79690 0.78237 0.83216 1.20207 1.21145 1.20115 1.21503 1.01168 0.79270 1.09533 1.42697 1.07757 1.06255 1.45124 0.90762 0.89657 0.91100 0.80991 0.84387 0.84386 0.89252 0.97115 0.95020 0.92650 0.82545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.74 10.33 36.00 0.37 -0.37 16 2 C 0.14 2.37 7.96 -155.09 -1.23 1.14 16 3 N -0.46 -8.34 11.19 -10.12 -0.11 -8.45 16 4 C -0.04 -0.74 12.02 -16.96 -0.20 -0.94 16 5 C 0.00 0.08 6.80 -84.09 -0.57 -0.49 16 6 C -0.10 -1.72 10.11 -39.39 -0.40 -2.12 16 7 C -0.09 -1.57 8.73 -39.45 -0.34 -1.91 16 8 C -0.04 -0.76 4.69 -104.91 -0.49 -1.25 16 9 C 0.08 1.86 2.46 -92.92 -0.23 1.63 16 10 H 0.04 0.92 7.80 -51.93 -0.41 0.52 16 11 C -0.13 -2.97 8.79 37.15 0.33 -2.64 16 12 C -0.51 -13.12 8.24 -34.44 -0.28 -13.41 16 13 H 0.06 1.49 7.60 -52.49 -0.40 1.09 16 14 C 0.07 1.70 5.30 -17.82 -0.09 1.61 16 15 N -0.89 -23.83 11.32 55.43 0.63 -23.20 16 16 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 20 C 0.00 0.07 10.41 -16.48 -0.17 -0.10 16 21 N -0.35 -6.43 2.94 -58.16 -0.17 -6.60 16 22 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.07 0.81 8.05 -51.93 -0.42 0.40 16 25 H 0.17 2.33 8.06 -52.49 -0.42 1.91 16 26 H 0.14 1.80 8.06 -52.49 -0.42 1.37 16 27 H 0.14 2.47 7.61 -52.48 -0.40 2.07 16 28 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 29 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.03 0.67 7.40 -51.93 -0.38 0.28 16 31 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.16 2.64 7.79 -52.48 -0.41 2.23 16 LS Contribution 273.32 15.07 4.12 4.12 Total: -1.00 -28.61 273.32 -7.86 -36.47 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -3.98 Total: 1.24 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -3.33 Total: -18.86 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.34 Total: -38.24 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.61 -7.86 -36.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260410452.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.803 kcal (2) G-P(sol) polarization free energy of solvation -28.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds