Wall clock time and date at job start Mon Mar 30 2020 03:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30894 * 125.31764 * 2 1 4 4 C 1.33405 * 109.87562 * 180.02562 * 3 2 1 5 5 C 1.37994 * 107.45741 * 359.97438 * 4 3 2 6 6 C 1.40966 * 133.70941 * 180.02562 * 5 4 3 7 7 C 1.35883 * 119.17669 * 179.97438 * 6 5 4 8 8 C 1.40813 * 119.77086 * 0.06282 * 7 6 5 9 9 C 1.50704 * 119.68877 * 179.97438 * 8 7 6 10 10 H 1.08997 * 109.46782 * 179.97438 * 9 8 7 11 11 C 1.52993 * 109.47246 * 299.91642 * 9 8 7 12 12 C 1.50703 * 109.46984 * 59.91848 * 9 8 7 13 13 H 1.07997 * 119.99674 * 359.97438 * 12 9 8 14 14 C 1.37876 * 119.99486 * 179.97438 * 12 9 8 15 15 N 1.31507 * 120.00410 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99698 * 179.97438 * 14 12 9 17 17 H 1.48508 * 109.47104 * 59.99887 * 16 14 12 18 18 H 1.48493 * 109.47410 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47169 * 300.00433 * 16 14 12 20 20 C 1.34669 * 120.61787 * 359.91008 * 8 7 6 21 21 N 1.35041 * 125.31384 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.47703 * 269.98008 * 1 2 3 23 23 H 1.09000 * 109.46944 * 29.98141 * 1 2 3 24 24 H 1.09007 * 109.47383 * 149.97761 * 1 2 3 25 25 H 1.07999 * 126.27266 * 179.97438 * 4 3 2 26 26 H 1.07998 * 120.41516 * 359.97438 * 6 5 4 27 27 H 1.08005 * 120.11395 * 180.02562 * 7 6 5 28 28 H 1.08996 * 109.47428 * 179.97438 * 11 9 8 29 29 H 1.09002 * 109.47695 * 300.00247 * 11 9 8 30 30 H 1.09000 * 109.47204 * 59.99679 * 11 9 8 31 31 H 0.97001 * 120.00312 * 179.97438 * 15 14 12 32 32 H 1.08004 * 119.71701 * 180.34328 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2636 1.0680 0.0000 4 6 3.5495 0.7128 -0.0006 5 6 3.5981 -0.6663 -0.0003 6 6 4.6507 -1.6039 -0.0002 7 6 4.3562 -2.9304 0.0005 8 6 3.0114 -3.3481 -0.0002 9 6 2.6869 -4.8198 0.0001 10 1 1.6051 -4.9532 -0.0001 11 6 3.2803 -5.4731 -1.2496 12 6 3.2734 -5.4633 1.2301 13 1 3.8263 -4.8663 1.9403 14 6 3.1042 -6.8141 1.4486 15 7 2.4315 -7.5410 0.5835 16 14 3.8319 -7.6119 2.9729 17 1 3.2568 -6.9773 4.1862 18 1 3.5120 -9.0620 2.9732 19 1 5.3058 -7.4306 2.9708 20 6 2.0126 -2.4447 0.0003 21 7 2.2875 -1.1019 -0.0005 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3634 -0.8898 -0.5142 25 1 4.3973 1.3820 -0.0011 26 1 5.6784 -1.2721 -0.0007 27 1 5.1508 -3.6619 0.0010 28 1 3.0460 -6.5376 -1.2492 29 1 2.8561 -5.0077 -2.1393 30 1 4.3621 -5.3395 -1.2505 31 1 2.3127 -8.4914 0.7370 32 1 0.9864 -2.7812 0.0053 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260410452.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:32 Heat of formation + Delta-G solvation = 55.577894 kcal Electronic energy + Delta-G solvation = -15475.537244 eV Core-core repulsion = 13015.116511 eV Total energy + Delta-G solvation = -2460.420733 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.66116 -39.04098 -35.94572 -34.45252 -33.33229 -31.57742 -29.91637 -27.39020 -27.22228 -24.64859 -23.54734 -22.46348 -21.09590 -18.62926 -17.85821 -17.44170 -16.92788 -16.82725 -16.06764 -15.58799 -14.86736 -14.56990 -14.12301 -13.98335 -13.68782 -13.44350 -13.22454 -13.05180 -12.83316 -12.58237 -12.45147 -12.20303 -12.06522 -11.58177 -11.49033 -11.23537 -11.06379 -10.49003 -9.84186 -8.28585 -8.11283 -6.26397 0.00615 0.44126 1.43138 1.44149 1.51243 1.76351 2.08037 2.41224 2.62145 3.16391 3.55007 3.63837 3.84440 4.02555 4.20090 4.24393 4.50321 4.63298 4.69301 4.78307 4.85866 4.98731 5.04086 5.16766 5.19478 5.31368 5.40140 5.58244 5.66354 5.81621 5.90167 6.02629 6.29000 6.33704 6.80787 6.95144 7.42111 8.91816 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037307 B = 0.006747 C = 0.006518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.350662 B = 4148.812818 C = 4294.936894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.135 3.865 3 N -0.482 5.482 4 C -0.036 4.036 5 C -0.025 4.025 6 C -0.081 4.081 7 C -0.111 4.111 8 C -0.054 4.054 9 C 0.083 3.917 10 H 0.014 0.986 11 C -0.123 4.123 12 C -0.525 4.525 13 H 0.053 0.947 14 C 0.021 3.979 15 N -0.913 5.913 16 Si 0.951 3.049 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.270 1.270 20 C 0.003 3.997 21 N -0.360 5.360 22 H 0.086 0.914 23 H 0.101 0.899 24 H 0.081 0.919 25 H 0.204 0.796 26 H 0.176 0.824 27 H 0.138 0.862 28 H 0.063 0.937 29 H 0.025 0.975 30 H 0.036 0.964 31 H 0.263 0.737 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.749 10.034 -1.667 10.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.119 4.119 3 N -0.198 5.198 4 C -0.190 4.190 5 C -0.135 4.135 6 C -0.100 4.100 7 C -0.132 4.132 8 C -0.056 4.056 9 C 0.064 3.936 10 H 0.032 0.968 11 C -0.181 4.181 12 C -0.563 4.563 13 H 0.071 0.929 14 C -0.179 4.179 15 N -0.552 5.552 16 Si 0.777 3.223 17 H -0.202 1.202 18 H -0.209 1.209 19 H -0.195 1.195 20 C -0.116 4.116 21 N -0.031 5.031 22 H 0.105 0.895 23 H 0.120 0.880 24 H 0.100 0.900 25 H 0.221 0.779 26 H 0.193 0.807 27 H 0.156 0.844 28 H 0.081 0.919 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.197 10.653 -1.703 10.790 hybrid contribution 0.570 -1.647 0.771 1.906 sum 0.767 9.006 -0.932 9.086 Atomic orbital electron populations 1.20248 0.82457 1.04853 1.04264 1.23793 0.97079 0.79413 1.11615 1.69893 1.03278 1.28235 1.18375 1.22912 0.94955 0.90603 1.10560 1.20131 0.84635 0.96094 1.12634 1.20814 0.98784 0.90721 0.99722 1.21173 0.96336 0.96035 0.99647 1.20124 0.93022 0.97056 0.95438 1.17655 0.95839 0.85252 0.94882 0.96758 1.21631 0.98797 1.02341 0.95330 1.21261 1.34862 0.93595 1.06536 0.92920 1.25617 0.95439 0.97799 0.99015 1.69974 1.41472 1.07127 1.36661 0.85723 0.79195 0.77318 0.80111 1.20175 1.20928 1.19468 1.21512 1.01378 0.79586 1.09117 1.42843 1.08382 1.06146 1.45682 0.89492 0.88047 0.89982 0.77882 0.80700 0.84443 0.91850 0.95610 0.94468 0.92756 0.81541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.40 10.33 71.23 0.74 -0.66 16 2 C 0.14 4.41 7.96 138.01 1.10 5.51 16 3 N -0.48 -16.37 11.19 -185.92 -2.08 -18.45 16 4 C -0.04 -1.11 12.02 84.40 1.01 -0.09 16 5 C -0.03 -0.85 6.80 38.77 0.26 -0.59 16 6 C -0.08 -2.51 10.11 22.39 0.23 -2.28 16 7 C -0.11 -4.00 8.73 22.35 0.20 -3.80 16 8 C -0.05 -2.16 4.69 -20.05 -0.09 -2.26 16 9 C 0.08 3.88 2.46 -12.29 -0.03 3.85 16 10 H 0.01 0.72 7.80 -2.39 -0.02 0.70 16 11 C -0.12 -5.56 8.79 71.98 0.63 -4.93 16 12 C -0.52 -27.03 8.24 25.60 0.21 -26.82 16 13 H 0.05 2.71 7.60 -2.91 -0.02 2.69 16 14 C 0.02 1.08 5.30 84.66 0.45 1.53 16 15 N -0.91 -49.80 11.32 21.45 0.24 -49.56 16 16 Si 0.95 41.64 29.54 68.60 2.03 43.66 16 17 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 18 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 20 C 0.00 0.09 10.41 83.06 0.86 0.96 16 21 N -0.36 -12.75 2.94 -337.93 -0.99 -13.75 16 22 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.08 1.72 8.05 -2.38 -0.02 1.70 16 25 H 0.20 4.75 8.06 -2.91 -0.02 4.73 16 26 H 0.18 3.93 8.06 -2.91 -0.02 3.90 16 27 H 0.14 4.85 7.61 -2.91 -0.02 4.83 16 28 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 29 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.04 1.58 7.40 -2.39 -0.02 1.56 16 31 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 32 H 0.17 5.58 7.79 -2.91 -0.02 5.56 16 Total: -1.00 -60.47 273.32 5.87 -54.60 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 1.11 Total: 13.06 kcal Atomic # 6 Polarization: -35.14 SS G_CDS: 5.57 Total: -29.57 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -2.83 Total: -81.76 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.66 kcal Total: -60.47 5.87 -54.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260410452.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.179 kcal (2) G-P(sol) polarization free energy of solvation -60.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds