Wall clock time and date at job start Mon Mar 30 2020 03:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30239 * 126.10667 * 2 1 4 4 N 1.39869 * 110.09979 * 180.13264 * 3 2 1 5 5 C 1.46500 * 125.46467 * 179.83923 * 4 3 2 6 6 C 1.50696 * 109.46944 * 269.69309 * 5 4 3 7 7 H 1.07999 * 120.00202 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99746 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99573 * 0.27650 * 8 6 5 10 10 Si 1.86800 * 119.99781 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47035 * 60.00183 * 10 8 6 12 12 H 1.48503 * 109.46845 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47237 * 299.99939 * 10 8 6 14 14 C 1.37055 * 109.07356 * 359.57615 * 4 3 2 15 15 C 1.40849 * 106.72641 * 0.23984 * 14 4 3 16 16 C 1.39902 * 119.64978 * 179.97438 * 15 14 4 17 17 C 1.36501 * 119.63566 * 0.02562 * 16 15 14 18 18 C 1.38919 * 120.63072 * 359.97438 * 17 16 15 19 19 C 1.36628 * 120.81336 * 0.02562 * 18 17 16 20 20 C 1.50706 * 120.07500 * 179.97438 * 19 18 17 21 21 H 1.08991 * 109.47462 * 270.32667 * 1 2 3 22 22 H 1.08997 * 109.47293 * 30.33488 * 1 2 3 23 23 H 1.09006 * 109.46992 * 150.32490 * 1 2 3 24 24 H 1.09000 * 109.46609 * 149.69491 * 5 4 3 25 25 H 1.08999 * 109.46486 * 29.69570 * 5 4 3 26 26 H 0.97001 * 120.00651 * 359.71956 * 9 8 6 27 27 H 1.08002 * 120.18032 * 180.02562 * 16 15 14 28 28 H 1.08001 * 119.68179 * 180.02562 * 17 16 15 29 29 H 1.07996 * 119.59597 * 179.97438 * 18 17 16 30 30 H 1.08998 * 109.47086 * 269.98241 * 20 19 18 31 31 H 1.09002 * 109.46629 * 29.98122 * 20 19 18 32 32 H 1.08992 * 109.46759 * 149.97977 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2745 1.0522 0.0000 4 7 3.6189 0.6665 -0.0030 5 6 4.7650 1.5791 -0.0073 6 6 5.1589 1.8841 -1.4295 7 1 4.6107 1.4421 -2.2483 8 6 6.2199 2.7267 -1.6854 9 7 6.8914 3.2598 -0.6882 10 14 6.7087 3.1043 -3.4483 11 1 5.5670 3.7408 -4.1530 12 1 7.8703 4.0294 -3.4526 13 1 7.0769 1.8433 -4.1408 14 6 3.6923 -0.7020 0.0045 15 6 2.3670 -1.1790 0.0068 16 6 2.1275 -2.5574 0.0138 17 6 3.1809 -3.4254 0.0189 18 6 4.4874 -2.9531 0.0167 19 6 4.7466 -1.6116 0.0098 20 6 6.1703 -1.1175 0.0081 21 1 -0.3634 0.0059 1.0275 22 1 -0.3634 0.8869 -0.5190 23 1 -0.3633 -0.8929 -0.5088 24 1 5.6032 1.1119 0.5097 25 1 4.4944 2.5044 0.5013 26 1 6.6379 3.0636 0.2273 27 1 1.1148 -2.9325 0.0152 28 1 2.9969 -4.4896 0.0239 29 1 5.3083 -3.6548 0.0212 30 1 6.5129 -0.9928 1.0353 31 1 6.8056 -1.8420 -0.5014 32 1 6.2220 -0.1605 -0.5110 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260420098.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:00 Heat of formation + Delta-G solvation = 68.230377 kcal Electronic energy + Delta-G solvation = -15682.698566 eV Core-core repulsion = 13222.826486 eV Total energy + Delta-G solvation = -2459.872080 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.73577 -36.89636 -34.64939 -32.77654 -31.21322 -29.29365 -28.93092 -26.57050 -25.26791 -22.86128 -21.83920 -21.27697 -18.73907 -17.25161 -16.30850 -15.81577 -14.87965 -14.69586 -13.95284 -13.77352 -13.21594 -13.08530 -13.00574 -12.66578 -12.25748 -12.21358 -12.02793 -11.78552 -11.21370 -10.94048 -10.88409 -10.57555 -10.46305 -10.19282 -9.98542 -9.46995 -8.80984 -8.60579 -8.12706 -7.08886 -6.58239 -4.37017 1.44913 2.04251 3.04398 3.26949 3.35017 3.36549 3.55598 4.22813 4.37830 4.95054 4.99839 5.11559 5.22631 5.29588 5.57826 5.70968 5.78679 5.84951 5.88054 6.00132 6.14917 6.23419 6.28479 6.36510 6.57752 6.69224 6.79493 6.90872 7.03175 7.12856 7.36982 7.67049 7.77683 8.26368 8.43350 8.55128 9.31522 10.75210 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026581 B = 0.008837 C = 0.007460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.127466 B = 3167.876335 C = 3752.256787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.058 3.942 3 N -0.244 5.244 4 N -0.358 5.358 5 C 0.248 3.752 6 C -0.614 4.614 7 H 0.057 0.943 8 C 0.027 3.973 9 N -0.900 5.900 10 Si 1.073 2.927 11 H -0.286 1.286 12 H -0.279 1.279 13 H -0.285 1.285 14 C 0.136 3.864 15 C -0.186 4.186 16 C -0.053 4.053 17 C -0.168 4.168 18 C -0.092 4.092 19 C -0.087 4.087 20 C -0.131 4.131 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.049 0.951 25 H 0.038 0.962 26 H 0.268 0.732 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.933 -10.776 1.728 12.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.118 4.118 3 N -0.060 5.060 4 N -0.143 5.143 5 C 0.130 3.870 6 C -0.653 4.653 7 H 0.075 0.925 8 C -0.178 4.178 9 N -0.535 5.535 10 Si 0.900 3.100 11 H -0.212 1.212 12 H -0.204 1.204 13 H -0.211 1.211 14 C 0.017 3.983 15 C -0.194 4.194 16 C -0.074 4.074 17 C -0.188 4.188 18 C -0.113 4.113 19 C -0.091 4.091 20 C -0.187 4.187 21 H 0.091 0.909 22 H 0.091 0.909 23 H 0.092 0.908 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.655 -8.461 0.815 10.209 hybrid contribution -1.028 -1.667 0.915 2.162 sum -6.683 -10.128 1.730 12.257 Atomic orbital electron populations 1.20063 0.86581 1.03006 1.02505 1.23333 0.96231 0.89021 1.03179 1.76491 0.88436 1.23820 1.17253 1.48879 1.03885 1.02785 1.58775 1.19840 0.79768 0.87999 0.99385 1.22185 1.18884 1.33075 0.91131 0.92459 1.25891 0.92841 0.92718 1.06390 1.70842 1.40296 1.42236 1.00138 0.83477 0.76538 0.76718 0.73316 1.21188 1.20382 1.21096 1.18737 0.94781 0.85337 0.99441 1.19766 0.91868 0.94091 1.13697 1.20133 0.98659 0.90472 0.98117 1.20442 0.92455 0.98917 1.07007 1.20480 0.96773 0.93762 1.00303 1.18734 0.94191 0.91885 1.04306 1.21088 0.91509 1.04120 1.02004 0.90876 0.90879 0.90779 0.93377 0.94391 0.92171 0.86471 0.86493 0.86170 0.92150 0.92020 0.88112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.85 10.48 36.00 0.38 -0.47 16 2 C 0.06 1.11 7.43 -80.19 -0.60 0.52 16 3 N -0.24 -5.68 12.40 34.84 0.43 -5.25 16 4 N -0.36 -8.76 3.63 -59.88 -0.22 -8.98 16 5 C 0.25 6.45 4.68 -5.20 -0.02 6.42 16 6 C -0.61 -17.20 8.34 -34.44 -0.29 -17.49 16 7 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 8 C 0.03 0.75 5.46 -17.82 -0.10 0.65 16 9 N -0.90 -26.01 13.65 55.43 0.76 -25.25 16 10 Si 1.07 24.79 29.90 -169.99 -5.08 19.70 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 14 C 0.14 3.00 6.79 -84.17 -0.57 2.43 16 15 C -0.19 -3.64 6.33 -105.21 -0.67 -4.30 16 16 C -0.05 -0.84 10.07 -39.59 -0.40 -1.24 16 17 C -0.17 -2.49 9.97 -39.96 -0.40 -2.89 16 18 C -0.09 -1.49 9.60 -39.91 -0.38 -1.88 16 19 C -0.09 -1.71 5.86 -104.83 -0.61 -2.32 16 20 C -0.13 -2.48 8.84 36.01 0.32 -2.16 16 21 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 23 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.05 1.22 5.61 -51.93 -0.29 0.93 16 25 H 0.04 1.04 8.01 -51.93 -0.42 0.62 16 26 H 0.27 7.64 7.22 -40.82 -0.29 7.35 16 27 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 32 H 0.10 2.28 4.73 -51.93 -0.25 2.03 16 LS Contribution 272.97 15.07 4.11 4.11 Total: -1.00 -31.23 272.97 -7.17 -38.41 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -3.83 Total: -0.01 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: -3.34 Total: -22.73 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.97 Total: -39.48 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -5.08 Total: 19.70 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.23 -7.17 -38.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260420098.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.636 kcal (2) G-P(sol) polarization free energy of solvation -31.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds