Wall clock time and date at job start Mon Mar 30 2020 03:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30239 * 126.10667 * 2 1 4 4 N 1.39869 * 110.09979 * 180.13264 * 3 2 1 5 5 C 1.46500 * 125.46467 * 179.83923 * 4 3 2 6 6 C 1.50696 * 109.46944 * 269.69309 * 5 4 3 7 7 H 1.07999 * 120.00202 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99746 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99573 * 0.27650 * 8 6 5 10 10 Si 1.86800 * 119.99781 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47035 * 60.00183 * 10 8 6 12 12 H 1.48503 * 109.46845 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47237 * 299.99939 * 10 8 6 14 14 C 1.37055 * 109.07356 * 359.57615 * 4 3 2 15 15 C 1.40849 * 106.72641 * 0.23984 * 14 4 3 16 16 C 1.39902 * 119.64978 * 179.97438 * 15 14 4 17 17 C 1.36501 * 119.63566 * 0.02562 * 16 15 14 18 18 C 1.38919 * 120.63072 * 359.97438 * 17 16 15 19 19 C 1.36628 * 120.81336 * 0.02562 * 18 17 16 20 20 C 1.50706 * 120.07500 * 179.97438 * 19 18 17 21 21 H 1.08991 * 109.47462 * 270.32667 * 1 2 3 22 22 H 1.08997 * 109.47293 * 30.33488 * 1 2 3 23 23 H 1.09006 * 109.46992 * 150.32490 * 1 2 3 24 24 H 1.09000 * 109.46609 * 149.69491 * 5 4 3 25 25 H 1.08999 * 109.46486 * 29.69570 * 5 4 3 26 26 H 0.97001 * 120.00651 * 359.71956 * 9 8 6 27 27 H 1.08002 * 120.18032 * 180.02562 * 16 15 14 28 28 H 1.08001 * 119.68179 * 180.02562 * 17 16 15 29 29 H 1.07996 * 119.59597 * 179.97438 * 18 17 16 30 30 H 1.08998 * 109.47086 * 269.98241 * 20 19 18 31 31 H 1.09002 * 109.46629 * 29.98122 * 20 19 18 32 32 H 1.08992 * 109.46759 * 149.97977 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2745 1.0522 0.0000 4 7 3.6189 0.6665 -0.0030 5 6 4.7650 1.5791 -0.0073 6 6 5.1589 1.8841 -1.4295 7 1 4.6107 1.4421 -2.2483 8 6 6.2199 2.7267 -1.6854 9 7 6.8914 3.2598 -0.6882 10 14 6.7087 3.1043 -3.4483 11 1 5.5670 3.7408 -4.1530 12 1 7.8703 4.0294 -3.4526 13 1 7.0769 1.8433 -4.1408 14 6 3.6923 -0.7020 0.0045 15 6 2.3670 -1.1790 0.0068 16 6 2.1275 -2.5574 0.0138 17 6 3.1809 -3.4254 0.0189 18 6 4.4874 -2.9531 0.0167 19 6 4.7466 -1.6116 0.0098 20 6 6.1703 -1.1175 0.0081 21 1 -0.3634 0.0059 1.0275 22 1 -0.3634 0.8869 -0.5190 23 1 -0.3633 -0.8929 -0.5088 24 1 5.6032 1.1119 0.5097 25 1 4.4944 2.5044 0.5013 26 1 6.6379 3.0636 0.2273 27 1 1.1148 -2.9325 0.0152 28 1 2.9969 -4.4896 0.0239 29 1 5.3083 -3.6548 0.0212 30 1 6.5129 -0.9928 1.0353 31 1 6.8056 -1.8420 -0.5014 32 1 6.2220 -0.1605 -0.5110 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260420098.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:00 Heat of formation + Delta-G solvation = 49.148733 kcal Electronic energy + Delta-G solvation = -15683.526008 eV Core-core repulsion = 13222.826486 eV Total energy + Delta-G solvation = -2460.699522 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.22447 -38.28872 -36.49446 -34.55507 -32.62105 -30.79419 -30.48757 -27.99450 -27.06002 -24.75144 -23.28004 -22.72524 -20.24280 -19.26365 -17.75199 -17.44811 -16.33387 -16.16112 -15.74731 -15.38343 -14.84991 -14.53258 -14.41743 -14.26323 -13.79772 -13.50645 -13.35977 -13.32094 -12.94881 -12.67778 -12.39508 -12.12532 -12.00059 -11.85556 -11.51539 -11.29211 -10.74411 -10.53872 -9.56023 -8.95377 -8.49321 -6.62339 0.08124 0.67623 1.44608 1.51735 1.56072 1.65882 1.74767 2.43286 2.89062 2.94865 3.56952 3.65744 3.82889 4.07183 4.27835 4.43167 4.47508 4.51525 4.60899 4.67810 4.74148 4.80475 4.86374 5.00322 5.06913 5.12377 5.32554 5.54391 5.61107 5.65560 5.72522 5.79754 6.10114 6.21869 6.36697 6.86681 7.14394 8.50734 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026581 B = 0.008837 C = 0.007460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.127466 B = 3167.876335 C = 3752.256787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.073 3.927 3 N -0.305 5.305 4 N -0.394 5.394 5 C 0.265 3.735 6 C -0.620 4.620 7 H 0.035 0.965 8 C -0.015 4.015 9 N -0.917 5.917 10 Si 1.117 2.883 11 H -0.277 1.277 12 H -0.271 1.271 13 H -0.268 1.268 14 C 0.100 3.900 15 C -0.206 4.206 16 C -0.045 4.045 17 C -0.159 4.159 18 C -0.075 4.075 19 C -0.128 4.128 20 C -0.123 4.123 21 H 0.097 0.903 22 H 0.074 0.926 23 H 0.107 0.893 24 H 0.045 0.955 25 H 0.007 0.993 26 H 0.258 0.742 27 H 0.161 0.839 28 H 0.166 0.834 29 H 0.155 0.845 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.382 -14.116 1.025 16.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 N -0.120 5.120 4 N -0.180 5.180 5 C 0.146 3.854 6 C -0.658 4.658 7 H 0.054 0.946 8 C -0.215 4.215 9 N -0.552 5.552 10 Si 0.937 3.063 11 H -0.202 1.202 12 H -0.196 1.196 13 H -0.193 1.193 14 C -0.016 4.016 15 C -0.214 4.214 16 C -0.065 4.065 17 C -0.179 4.179 18 C -0.095 4.095 19 C -0.132 4.132 20 C -0.179 4.179 21 H 0.115 0.885 22 H 0.093 0.907 23 H 0.126 0.874 24 H 0.063 0.937 25 H 0.025 0.975 26 H 0.067 0.933 27 H 0.179 0.821 28 H 0.183 0.817 29 H 0.172 0.828 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.121 -11.830 0.132 13.808 hybrid contribution -0.699 -0.837 1.197 1.619 sum -7.820 -12.667 1.328 14.946 Atomic orbital electron populations 1.20342 0.82354 1.04747 1.04518 1.24379 0.98506 0.88229 0.99227 1.76405 0.88490 1.26259 1.20864 1.48575 1.03717 1.03565 1.62137 1.19332 0.80869 0.87345 0.97876 1.22272 1.18843 1.33084 0.91565 0.94642 1.27312 0.92571 0.92095 1.09550 1.70940 1.40988 1.43251 1.00069 0.82939 0.76741 0.77470 0.69145 1.20219 1.19580 1.19259 1.19373 0.97128 0.84598 1.00551 1.20225 0.90680 0.95944 1.14572 1.20678 1.01371 0.88500 0.95924 1.21028 0.91237 1.01216 1.04390 1.20981 0.98988 0.92547 0.96978 1.19021 0.93580 0.93286 1.07345 1.20940 0.92632 1.02514 1.01842 0.88491 0.90721 0.87424 0.93699 0.97528 0.93270 0.82105 0.81689 0.82753 0.91961 0.89464 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.48 10.48 71.24 0.75 -0.74 16 2 C 0.07 2.78 7.43 44.79 0.33 3.12 16 3 N -0.30 -14.86 12.40 -43.69 -0.54 -15.40 16 4 N -0.39 -20.46 3.63 -343.36 -1.25 -21.70 16 5 C 0.27 14.94 4.68 85.63 0.40 15.34 16 6 C -0.62 -36.80 8.34 25.60 0.21 -36.59 16 7 H 0.04 2.20 7.81 -2.91 -0.02 2.18 16 8 C -0.02 -0.88 5.46 84.66 0.46 -0.41 16 9 N -0.92 -55.27 13.65 21.45 0.29 -54.98 16 10 Si 1.12 50.78 29.90 68.60 2.05 52.83 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 13 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 14 C 0.10 4.51 6.79 39.21 0.27 4.77 16 15 C -0.21 -7.78 6.33 -20.24 -0.13 -7.90 16 16 C -0.04 -1.21 10.07 22.27 0.22 -0.99 16 17 C -0.16 -3.86 9.97 22.03 0.22 -3.64 16 18 C -0.07 -2.15 9.60 22.06 0.21 -1.93 16 19 C -0.13 -4.98 5.86 -20.00 -0.12 -5.10 16 20 C -0.12 -4.78 8.84 71.24 0.63 -4.15 16 21 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 22 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 23 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 24 H 0.05 2.50 5.61 -2.39 -0.01 2.49 16 25 H 0.01 0.41 8.01 -2.39 -0.02 0.39 16 26 H 0.26 15.66 7.22 -92.71 -0.67 14.99 16 27 H 0.16 2.92 8.06 -2.91 -0.02 2.89 16 28 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 29 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 30 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.09 2.79 8.08 -2.39 -0.02 2.77 16 32 H 0.06 2.70 4.73 -2.39 -0.01 2.69 16 Total: -1.00 -73.92 272.97 5.23 -68.69 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 1.22 Total: 8.78 kcal Atomic # 6 Polarization: -41.68 SS G_CDS: 3.46 Total: -38.21 kcal Atomic # 7 Polarization: -90.59 SS G_CDS: -1.50 Total: -92.08 kcal Atomic # 14 Polarization: 50.78 SS G_CDS: 2.05 Total: 52.83 kcal Total: -73.92 5.23 -68.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260420098.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.838 kcal (2) G-P(sol) polarization free energy of solvation -73.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds