Wall clock time and date at job start Mon Mar 30 2020 03:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 N 1.36913 * 125.04219 * 264.69560 * 3 2 1 5 5 H 0.97002 * 124.99060 * 359.97438 * 4 3 2 6 6 C 1.37425 * 110.02159 * 179.81878 * 4 3 2 7 7 N 1.32657 * 133.18747 * 180.12485 * 6 4 3 8 8 C 1.31590 * 121.67304 * 180.34233 * 7 6 4 9 9 C 1.38668 * 121.57964 * 359.97438 * 8 7 6 10 10 C 1.38203 * 119.41333 * 359.96649 * 9 8 7 11 11 C 1.39696 * 118.03755 * 0.06682 * 10 9 8 12 12 C 1.34227 * 125.04456 * 84.99733 * 3 2 1 13 13 C 1.50704 * 126.56645 * 0.02562 * 12 3 2 14 14 C 1.50693 * 109.47216 * 89.99518 * 13 12 3 15 15 H 1.08001 * 120.00202 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00047 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00203 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00208 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46889 * 60.00008 * 18 16 14 20 20 H 1.48498 * 109.47256 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47111 * 300.00406 * 18 16 14 22 22 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46955 * 300.00219 * 1 2 3 24 24 H 1.09000 * 109.47050 * 60.00048 * 1 2 3 25 25 H 1.09000 * 109.47050 * 119.99952 * 2 1 3 26 26 H 1.09001 * 109.46801 * 240.00064 * 2 1 3 27 27 H 1.07995 * 119.21039 * 179.97438 * 8 7 6 28 28 H 1.08001 * 120.29414 * 180.02562 * 9 8 7 29 29 H 1.08000 * 120.98174 * 179.97438 * 10 9 8 30 30 H 1.08996 * 109.46907 * 209.99537 * 13 12 3 31 31 H 1.09004 * 109.47104 * 329.99469 * 13 12 3 32 32 H 0.96993 * 120.00304 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3920 2.1275 -1.1161 5 1 2.3614 1.7869 -2.0239 6 6 2.7995 3.3912 -0.7619 7 7 3.2327 4.4340 -1.4581 8 6 3.5768 5.5610 -0.8725 9 6 3.5035 5.7163 0.5035 10 6 3.0584 4.6650 1.2824 11 6 2.6991 3.4778 0.6398 12 6 2.1989 2.1794 1.0947 13 6 1.9233 1.7726 2.5194 14 6 3.1661 1.1656 3.1178 15 1 4.0656 1.0831 2.5259 16 6 3.1551 0.7166 4.4213 17 7 2.0598 0.8175 5.1424 18 14 4.6954 -0.0365 5.1629 19 1 5.7958 0.9602 5.1361 20 1 4.4239 -0.4373 6.5668 21 1 5.0907 -1.2316 4.3750 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.9246 6.3848 -1.4781 28 1 3.7909 6.6508 0.9624 29 1 2.9916 4.7581 2.3563 30 1 1.6325 2.6494 3.0979 31 1 1.1160 1.0405 2.5386 32 1 2.0520 0.5012 6.0593 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260433076.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:57 Heat of formation + Delta-G solvation = 48.023703 kcal Electronic energy + Delta-G solvation = -15486.558058 eV Core-core repulsion = 13025.809751 eV Total energy + Delta-G solvation = -2460.748307 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.99204 -37.56253 -33.74385 -32.76696 -32.19575 -30.25219 -28.55265 -26.65433 -24.01231 -23.08220 -22.22267 -20.95398 -18.33496 -17.49055 -16.26807 -15.96487 -15.51519 -14.54851 -14.50084 -14.06895 -13.70321 -13.12328 -12.56561 -12.39526 -12.28627 -11.92655 -11.74585 -11.41974 -11.25006 -10.91923 -10.75463 -10.64381 -10.25751 -9.94595 -9.69638 -9.25808 -8.86149 -8.37879 -7.85927 -7.05624 -5.99616 -4.03532 1.55286 1.88733 3.28882 3.32723 3.34881 3.37465 3.44952 4.40718 4.49514 4.98096 5.16722 5.29413 5.33405 5.45726 5.58037 5.65168 5.72395 5.75257 6.03610 6.13711 6.28321 6.32858 6.47459 6.59503 6.60578 6.82630 7.15827 7.25221 7.51913 7.62678 7.81154 7.94538 7.97606 8.39943 8.50377 9.01547 9.59995 11.08769 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.021998 B = 0.009091 C = 0.007171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.555391 B = 3079.171978 C = 3903.430291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.053 4.053 3 C 0.053 3.947 4 N -0.584 5.584 5 H 0.408 0.592 6 C 0.279 3.721 7 N -0.511 5.511 8 C 0.123 3.877 9 C -0.220 4.220 10 C -0.015 4.015 11 C -0.142 4.142 12 C -0.097 4.097 13 C 0.082 3.918 14 C -0.507 4.507 15 H 0.054 0.946 16 C 0.059 3.941 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.045 0.955 25 H 0.101 0.899 26 H 0.060 0.940 27 H 0.151 0.849 28 H 0.129 0.871 29 H 0.135 0.865 30 H 0.026 0.974 31 H 0.031 0.969 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.666 3.413 -9.732 10.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.091 4.091 3 C -0.051 4.051 4 N -0.191 5.191 5 H 0.244 0.756 6 C 0.046 3.954 7 N -0.225 5.225 8 C -0.042 4.042 9 C -0.242 4.242 10 C -0.041 4.041 11 C -0.149 4.149 12 C -0.103 4.103 13 C 0.045 3.955 14 C -0.545 4.545 15 H 0.072 0.928 16 C -0.142 4.142 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 H 0.075 0.925 23 H 0.085 0.915 24 H 0.064 0.936 25 H 0.120 0.880 26 H 0.079 0.921 27 H 0.168 0.832 28 H 0.147 0.853 29 H 0.153 0.847 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.733 3.131 -10.547 11.027 hybrid contribution 0.917 -0.370 0.870 1.317 sum 0.184 2.761 -9.678 10.065 Atomic orbital electron populations 1.21740 0.94881 1.01433 1.02169 1.20128 0.95797 0.89672 1.03549 1.20045 1.05473 0.94952 0.84679 1.41367 1.59352 1.09520 1.08852 0.75559 1.18330 0.99822 0.87019 0.90278 1.66385 1.15871 0.99373 1.40908 1.22211 0.96377 0.93127 0.92495 1.21712 1.07283 1.00175 0.95030 1.21064 0.92215 0.90481 1.00375 1.19971 1.05724 0.96161 0.93088 1.20978 1.02030 0.90279 0.97007 1.17732 0.97017 0.96570 0.84222 1.21053 0.97216 1.39391 0.96857 0.92802 1.24978 0.96043 0.96098 0.97097 1.69936 1.26939 1.47307 1.09243 0.86676 0.83622 0.79725 0.78124 1.20281 1.21285 1.20275 0.92479 0.91543 0.93575 0.88019 0.92085 0.83185 0.85329 0.84732 0.95618 0.95126 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.90 37.16 0.37 -1.71 16 2 C -0.05 -0.86 5.96 -27.88 -0.17 -1.02 16 3 C 0.05 1.00 6.34 -81.74 -0.52 0.48 16 4 N -0.58 -10.20 6.05 -8.43 -0.05 -10.25 16 5 H 0.41 5.77 8.96 -40.82 -0.37 5.40 16 6 C 0.28 5.46 8.43 -155.69 -1.31 4.15 16 7 N -0.51 -9.31 10.39 -12.27 -0.13 -9.44 16 8 C 0.12 1.91 11.15 -17.50 -0.20 1.72 16 9 C -0.22 -3.41 10.10 -39.44 -0.40 -3.81 16 10 C -0.02 -0.29 10.22 -39.05 -0.40 -0.68 16 11 C -0.14 -2.99 6.37 -105.11 -0.67 -3.66 16 12 C -0.10 -2.14 5.51 -102.76 -0.57 -2.70 16 13 C 0.08 2.07 5.11 -29.04 -0.15 1.92 16 14 C -0.51 -13.94 9.09 -34.44 -0.31 -14.25 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 18 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.07 1.08 7.68 -51.93 -0.40 0.68 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.10 1.84 7.93 -51.93 -0.41 1.43 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 29 H 0.13 2.47 8.06 -52.49 -0.42 2.05 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.03 0.79 7.36 -51.93 -0.38 0.41 16 32 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 278.92 15.07 4.20 4.20 Total: -1.00 -30.88 278.92 -8.73 -39.61 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -4.06 Total: 2.72 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -4.41 Total: -18.03 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: 0.56 Total: -44.83 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.88 -8.73 -39.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260433076.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.633 kcal (2) G-P(sol) polarization free energy of solvation -30.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds