Wall clock time and date at job start Mon Mar 30 2020 03:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 N 1.36913 * 125.04219 * 264.69560 * 3 2 1 5 5 H 0.97002 * 124.99060 * 359.97438 * 4 3 2 6 6 C 1.37425 * 110.02159 * 179.81878 * 4 3 2 7 7 N 1.32657 * 133.18747 * 180.12485 * 6 4 3 8 8 C 1.31590 * 121.67304 * 180.34233 * 7 6 4 9 9 C 1.38668 * 121.57964 * 359.97438 * 8 7 6 10 10 C 1.38203 * 119.41333 * 359.96649 * 9 8 7 11 11 C 1.39696 * 118.03755 * 0.06682 * 10 9 8 12 12 C 1.34227 * 125.04456 * 84.99733 * 3 2 1 13 13 C 1.50704 * 126.56645 * 0.02562 * 12 3 2 14 14 C 1.50693 * 109.47216 * 89.99518 * 13 12 3 15 15 H 1.08001 * 120.00202 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00047 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00203 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00208 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46889 * 60.00008 * 18 16 14 20 20 H 1.48498 * 109.47256 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47111 * 300.00406 * 18 16 14 22 22 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46955 * 300.00219 * 1 2 3 24 24 H 1.09000 * 109.47050 * 60.00048 * 1 2 3 25 25 H 1.09000 * 109.47050 * 119.99952 * 2 1 3 26 26 H 1.09001 * 109.46801 * 240.00064 * 2 1 3 27 27 H 1.07995 * 119.21039 * 179.97438 * 8 7 6 28 28 H 1.08001 * 120.29414 * 180.02562 * 9 8 7 29 29 H 1.08000 * 120.98174 * 179.97438 * 10 9 8 30 30 H 1.08996 * 109.46907 * 209.99537 * 13 12 3 31 31 H 1.09004 * 109.47104 * 329.99469 * 13 12 3 32 32 H 0.96993 * 120.00304 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3920 2.1275 -1.1161 5 1 2.3614 1.7869 -2.0239 6 6 2.7995 3.3912 -0.7619 7 7 3.2327 4.4340 -1.4581 8 6 3.5768 5.5610 -0.8725 9 6 3.5035 5.7163 0.5035 10 6 3.0584 4.6650 1.2824 11 6 2.6991 3.4778 0.6398 12 6 2.1989 2.1794 1.0947 13 6 1.9233 1.7726 2.5194 14 6 3.1661 1.1656 3.1178 15 1 4.0656 1.0831 2.5259 16 6 3.1551 0.7166 4.4213 17 7 2.0598 0.8175 5.1424 18 14 4.6954 -0.0365 5.1629 19 1 5.7958 0.9602 5.1361 20 1 4.4239 -0.4373 6.5668 21 1 5.0907 -1.2316 4.3750 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.9246 6.3848 -1.4781 28 1 3.7909 6.6508 0.9624 29 1 2.9916 4.7581 2.3563 30 1 1.6325 2.6494 3.0979 31 1 1.1160 1.0405 2.5386 32 1 2.0520 0.5012 6.0593 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260433076.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:56 Heat of formation + Delta-G solvation = 30.132719 kcal Electronic energy + Delta-G solvation = -15487.333869 eV Core-core repulsion = 13025.809751 eV Total energy + Delta-G solvation = -2461.524118 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.43026 -38.94381 -35.59514 -34.24782 -33.74769 -31.90309 -30.01924 -28.40856 -25.37565 -25.01795 -23.59984 -22.35131 -19.91475 -18.93302 -18.40181 -17.37867 -16.84150 -16.47964 -15.99689 -15.38930 -15.01878 -14.46493 -14.31712 -13.99880 -13.84735 -13.58701 -13.37537 -12.95401 -12.66140 -12.61477 -12.53139 -12.07949 -11.81701 -11.71634 -11.63057 -11.01833 -10.55724 -10.26408 -9.23826 -8.65485 -8.09803 -6.25689 0.14122 0.52063 1.40206 1.42226 1.50275 1.83910 1.91253 2.44596 3.03830 3.15831 3.68969 3.83998 3.93475 4.19901 4.23602 4.38064 4.39029 4.48948 4.77418 4.82057 4.93590 5.04565 5.07725 5.18224 5.33636 5.39601 5.44896 5.61136 5.70535 5.81019 5.93834 6.18048 6.29622 6.55990 6.85567 7.14776 7.41923 8.94471 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.021998 B = 0.009091 C = 0.007171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.555391 B = 3079.171978 C = 3903.430291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.053 4.053 3 C 0.075 3.925 4 N -0.570 5.570 5 H 0.426 0.574 6 C 0.264 3.736 7 N -0.518 5.518 8 C 0.129 3.871 9 C -0.200 4.200 10 C -0.045 4.045 11 C -0.176 4.176 12 C -0.150 4.150 13 C 0.100 3.900 14 C -0.519 4.519 15 H 0.045 0.955 16 C 0.009 3.991 17 N -0.928 5.928 18 Si 0.956 3.044 19 H -0.274 1.274 20 H -0.280 1.280 21 H -0.268 1.268 22 H 0.081 0.919 23 H 0.037 0.963 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.200 0.800 28 H 0.169 0.831 29 H 0.123 0.877 30 H -0.008 1.008 31 H 0.013 0.987 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.513 3.868 -11.599 12.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.091 4.091 3 C -0.032 4.032 4 N -0.178 5.178 5 H 0.265 0.735 6 C 0.031 3.969 7 N -0.233 5.233 8 C -0.037 4.037 9 C -0.221 4.221 10 C -0.071 4.071 11 C -0.183 4.183 12 C -0.157 4.157 13 C 0.063 3.937 14 C -0.557 4.557 15 H 0.063 0.937 16 C -0.189 4.189 17 N -0.568 5.568 18 Si 0.781 3.219 19 H -0.199 1.199 20 H -0.205 1.205 21 H -0.193 1.193 22 H 0.100 0.900 23 H 0.056 0.944 24 H 0.081 0.919 25 H 0.094 0.906 26 H 0.116 0.884 27 H 0.217 0.783 28 H 0.187 0.813 29 H 0.141 0.859 30 H 0.010 0.990 31 H 0.031 0.969 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.448 3.587 -12.449 12.963 hybrid contribution 0.549 -0.390 1.399 1.553 sum 0.998 3.196 -11.050 11.546 Atomic orbital electron populations 1.21685 0.93439 1.02888 1.01560 1.20215 0.96968 0.87928 1.04030 1.20302 1.02949 0.95566 0.84358 1.41258 1.58430 1.08889 1.09264 0.73456 1.18488 1.00642 0.88017 0.89739 1.66543 1.16112 0.99706 1.40916 1.23099 0.94262 0.93285 0.93040 1.22143 1.04562 1.00349 0.95058 1.21250 0.94026 0.91395 1.00455 1.20214 1.07129 0.96496 0.94454 1.20704 1.06306 0.92506 0.96141 1.17324 0.95660 0.94366 0.86391 1.21290 0.97598 1.39519 0.97267 0.93690 1.25797 0.99143 0.96461 0.97473 1.70056 1.28960 1.48184 1.09592 0.85644 0.79705 0.79056 0.77518 1.19904 1.20504 1.19251 0.90007 0.94391 0.91882 0.90592 0.88412 0.78350 0.81348 0.85879 0.98972 0.96911 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 9.90 71.98 0.71 -3.16 16 2 C -0.05 -1.68 5.96 29.85 0.18 -1.51 16 3 C 0.07 2.85 6.34 40.85 0.26 3.11 16 4 N -0.57 -19.31 6.05 -180.58 -1.09 -20.40 16 5 H 0.43 11.11 8.96 -92.71 -0.83 10.28 16 6 C 0.26 10.11 8.43 133.93 1.13 11.24 16 7 N -0.52 -17.65 10.39 -192.73 -2.00 -19.65 16 8 C 0.13 3.53 11.15 84.83 0.95 4.48 16 9 C -0.20 -5.72 10.10 22.36 0.23 -5.49 16 10 C -0.04 -1.71 10.22 22.61 0.23 -1.48 16 11 C -0.18 -7.58 6.37 -20.18 -0.13 -7.71 16 12 C -0.15 -6.95 5.51 -18.66 -0.10 -7.05 16 13 C 0.10 5.41 5.11 29.10 0.15 5.56 16 14 C -0.52 -29.76 9.09 25.60 0.23 -29.52 16 15 H 0.04 2.60 7.74 -2.91 -0.02 2.57 16 16 C 0.01 0.54 5.46 84.65 0.46 1.00 16 17 N -0.93 -55.46 13.29 21.45 0.28 -55.18 16 18 Si 0.96 44.39 29.54 68.60 2.03 46.41 16 19 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 22 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.04 1.26 7.68 -2.39 -0.02 1.25 16 24 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.08 2.82 7.93 -2.39 -0.02 2.80 16 26 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.20 3.47 8.06 -2.91 -0.02 3.44 16 28 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 29 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 30 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 31 H 0.01 0.71 7.36 -2.38 -0.02 0.69 16 32 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -69.49 278.92 3.80 -65.69 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.29 Total: 13.66 kcal Atomic # 6 Polarization: -34.83 SS G_CDS: 4.29 Total: -30.54 kcal Atomic # 7 Polarization: -92.42 SS G_CDS: -2.81 Total: -95.23 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -69.49 3.80 -65.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260433076.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.822 kcal (2) G-P(sol) polarization free energy of solvation -69.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds