Wall clock time and date at job start Mon Mar 30 2020 03:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34361 * 125.02880 * 2 1 4 4 C 1.50702 * 126.45603 * 0.02562 * 3 2 1 5 5 C 1.50702 * 109.46873 * 269.99967 * 4 3 2 6 6 H 1.07996 * 120.00213 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00156 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00122 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99682 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47204 * 90.00030 * 9 7 5 11 11 H 1.48501 * 109.46737 * 210.00174 * 9 7 5 12 12 H 1.48503 * 109.47001 * 329.99821 * 9 7 5 13 13 C 1.46423 * 107.08210 * 180.02562 * 3 2 1 14 14 N 1.33000 * 133.75422 * 180.02562 * 13 3 2 15 15 C 1.31534 * 121.39485 * 179.97438 * 14 13 3 16 16 C 1.38681 * 121.28180 * 0.02562 * 15 14 13 17 17 C 1.38306 * 119.67242 * 0.23718 * 16 15 14 18 18 C 1.39201 * 118.28700 * 359.49987 * 17 16 15 19 19 N 1.36634 * 125.02996 * 180.02562 * 2 1 3 20 20 C 1.46504 * 125.09651 * 359.96913 * 19 2 1 21 21 H 1.08992 * 109.46992 * 90.00335 * 1 2 3 22 22 H 1.09003 * 109.46995 * 210.00115 * 1 2 3 23 23 H 1.08994 * 109.47098 * 329.99788 * 1 2 3 24 24 H 1.08998 * 109.47622 * 29.99704 * 4 3 2 25 25 H 1.08999 * 109.46931 * 150.00371 * 4 3 2 26 26 H 0.96999 * 119.99975 * 179.97438 * 8 7 5 27 27 H 1.07999 * 119.35749 * 180.02562 * 15 14 13 28 28 H 1.08002 * 120.16171 * 179.97438 * 16 15 14 29 29 H 1.07991 * 120.85762 * 179.72064 * 17 16 15 30 30 H 1.09005 * 109.46631 * 89.99421 * 20 19 2 31 31 H 1.08996 * 109.47104 * 209.99775 * 20 19 2 32 32 H 1.09002 * 109.46967 * 330.00059 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2782 1.1002 0.0000 4 6 1.7997 2.5292 0.0005 5 6 1.6396 3.0059 -1.4201 6 1 1.8626 2.3408 -2.2412 7 6 1.2096 4.2915 -1.6717 8 7 1.0704 4.7077 -2.9115 9 14 0.8246 5.4423 -0.2514 10 1 2.0503 6.1914 0.1250 11 1 -0.2338 6.3993 -0.6628 12 1 0.3511 4.6508 0.9125 13 6 3.6712 0.6491 -0.0006 14 7 4.8422 1.2796 -0.0005 15 6 5.9778 0.6158 -0.0007 16 6 6.0015 -0.7708 -0.0016 17 6 4.8116 -1.4758 -0.0073 18 6 3.6192 -0.7576 -0.0013 19 7 2.2913 -1.1188 -0.0005 20 6 1.7933 -2.4966 -0.0005 21 1 -0.3633 -0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8899 0.5138 24 1 0.8405 2.5911 0.5147 25 1 2.5284 3.1562 0.5142 26 1 0.7675 5.6120 -3.0884 27 1 6.9100 1.1613 -0.0001 28 1 6.9444 -1.2974 -0.0022 29 1 4.8077 -2.5557 -0.0126 30 1 1.6692 -2.8381 -1.0282 31 1 2.5069 -3.1409 0.5129 32 1 0.8330 -2.5358 0.5138 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260469078.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:53 Heat of formation + Delta-G solvation = 66.073426 kcal Electronic energy + Delta-G solvation = -15560.797132 eV Core-core repulsion = 13100.831520 eV Total energy + Delta-G solvation = -2459.965612 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.15032 -37.67831 -34.00986 -32.28265 -31.17048 -30.88378 -28.96061 -27.02140 -25.26281 -22.52046 -22.16281 -21.08883 -18.46456 -16.65085 -16.53363 -16.40874 -15.41273 -15.28809 -14.09060 -13.90103 -13.40341 -13.18791 -12.92638 -12.66719 -12.59014 -12.41034 -12.03541 -11.74313 -11.59885 -11.10039 -11.09275 -10.36024 -10.30603 -10.00834 -9.55722 -9.18192 -8.71840 -8.42530 -7.78386 -7.04716 -5.92474 -3.88587 1.44190 1.85578 3.07599 3.20138 3.40474 3.46768 3.49673 4.47746 4.55150 4.78776 4.84569 4.93002 5.15762 5.23003 5.32932 5.41849 5.42340 5.58674 5.61589 5.79483 5.93547 6.02393 6.34118 6.38802 6.43278 6.49721 6.99252 7.11571 7.23861 7.40393 7.68653 7.74814 7.88806 8.65306 8.70375 9.13680 9.69068 11.21158 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026580 B = 0.008859 C = 0.007287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.189141 B = 3159.964463 C = 3841.308913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.063 3.937 3 C -0.093 4.093 4 C 0.051 3.949 5 C -0.498 4.498 6 H 0.069 0.931 7 C 0.067 3.933 8 N -0.906 5.906 9 Si 0.876 3.124 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.104 3.896 14 N -0.432 5.432 15 C 0.073 3.927 16 C -0.166 4.166 17 C -0.095 4.095 18 C 0.045 3.955 19 N -0.486 5.486 20 C 0.083 3.917 21 H 0.078 0.922 22 H 0.055 0.945 23 H 0.087 0.913 24 H 0.025 0.975 25 H 0.027 0.973 26 H 0.262 0.738 27 H 0.150 0.850 28 H 0.130 0.870 29 H 0.121 0.879 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.980 -14.688 7.732 16.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.043 4.043 3 C -0.099 4.099 4 C 0.014 3.986 5 C -0.536 4.536 6 H 0.087 0.913 7 C -0.134 4.134 8 N -0.545 5.545 9 Si 0.704 3.296 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.190 1.190 13 C -0.030 4.030 14 N -0.139 5.139 15 C -0.094 4.094 16 C -0.187 4.187 17 C -0.124 4.124 18 C -0.064 4.064 19 N -0.172 5.172 20 C -0.059 4.059 21 H 0.097 0.903 22 H 0.074 0.926 23 H 0.106 0.894 24 H 0.043 0.957 25 H 0.045 0.955 26 H 0.071 0.929 27 H 0.168 0.832 28 H 0.148 0.852 29 H 0.139 0.861 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.698 -13.903 7.627 16.085 hybrid contribution -0.008 -0.432 0.449 0.623 sum 2.690 -14.335 8.076 16.672 Atomic orbital electron populations 1.20359 0.87566 1.02583 1.03263 1.20081 0.93611 0.84263 1.06326 1.20437 0.87680 0.96388 1.05445 1.18167 0.95447 0.86759 0.98250 1.20935 1.43885 0.98149 0.90648 0.91269 1.24968 0.95269 0.97764 0.95369 1.69908 1.47983 1.17959 1.18679 0.86829 0.78356 0.81091 0.83358 1.20170 1.21513 1.18981 1.20075 0.92738 0.88082 1.02076 1.67114 0.97050 1.40397 1.09321 1.22512 0.95792 0.91225 0.99902 1.21692 0.97404 0.95720 1.03910 1.20272 0.89708 0.98924 1.03476 1.19067 0.85148 0.95978 1.06162 1.43426 1.03335 1.05628 1.64794 1.21812 1.00675 0.80867 1.02549 0.90328 0.92578 0.89427 0.95684 0.95470 0.92867 0.83249 0.85217 0.86080 0.91710 0.90782 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.25 9.82 36.01 0.35 -0.89 16 2 C 0.06 1.20 6.83 -81.82 -0.56 0.64 16 3 C -0.09 -2.15 5.50 -102.70 -0.57 -2.72 16 4 C 0.05 1.32 4.33 -29.03 -0.13 1.19 16 5 C -0.50 -14.81 9.65 -34.44 -0.33 -15.14 16 6 H 0.07 2.27 7.98 -52.49 -0.42 1.85 16 7 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 8 N -0.91 -28.65 13.96 55.43 0.77 -27.88 16 9 Si 0.88 22.25 27.47 -169.99 -4.67 17.58 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 13 C 0.10 2.34 7.49 -83.12 -0.62 1.72 16 14 N -0.43 -9.53 10.42 -9.86 -0.10 -9.63 16 15 C 0.07 1.24 11.16 -17.52 -0.20 1.05 16 16 C -0.17 -2.37 10.09 -39.39 -0.40 -2.76 16 17 C -0.09 -1.42 10.10 -39.20 -0.40 -1.82 16 18 C 0.05 0.84 6.82 -83.96 -0.57 0.27 16 19 N -0.49 -8.15 3.17 -117.18 -0.37 -8.52 16 20 C 0.08 0.91 10.81 59.85 0.65 1.56 16 21 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 22 H 0.06 0.66 6.91 -51.93 -0.36 0.30 16 23 H 0.09 1.40 7.04 -51.93 -0.37 1.03 16 24 H 0.03 0.61 6.11 -51.93 -0.32 0.29 16 25 H 0.03 0.72 7.57 -51.93 -0.39 0.33 16 26 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 27 H 0.15 2.04 8.06 -52.49 -0.42 1.62 16 28 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 32 H 0.08 0.73 6.88 -51.93 -0.36 0.38 16 LS Contribution 273.20 15.07 4.12 4.12 Total: -1.00 -35.35 273.20 -7.03 -42.38 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: -3.91 Total: -3.04 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -2.86 Total: -15.01 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.30 Total: -46.03 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -35.35 -7.03 -42.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260469078.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.456 kcal (2) G-P(sol) polarization free energy of solvation -35.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds