Wall clock time and date at job start Mon Mar 30 2020 03:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34361 * 125.02880 * 2 1 4 4 C 1.50702 * 126.45603 * 0.02562 * 3 2 1 5 5 C 1.50702 * 109.46873 * 269.99967 * 4 3 2 6 6 H 1.07996 * 120.00213 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00156 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00122 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99682 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47204 * 90.00030 * 9 7 5 11 11 H 1.48501 * 109.46737 * 210.00174 * 9 7 5 12 12 H 1.48503 * 109.47001 * 329.99821 * 9 7 5 13 13 C 1.46423 * 107.08210 * 180.02562 * 3 2 1 14 14 N 1.33000 * 133.75422 * 180.02562 * 13 3 2 15 15 C 1.31534 * 121.39485 * 179.97438 * 14 13 3 16 16 C 1.38681 * 121.28180 * 0.02562 * 15 14 13 17 17 C 1.38306 * 119.67242 * 0.23718 * 16 15 14 18 18 C 1.39201 * 118.28700 * 359.49987 * 17 16 15 19 19 N 1.36634 * 125.02996 * 180.02562 * 2 1 3 20 20 C 1.46504 * 125.09651 * 359.96913 * 19 2 1 21 21 H 1.08992 * 109.46992 * 90.00335 * 1 2 3 22 22 H 1.09003 * 109.46995 * 210.00115 * 1 2 3 23 23 H 1.08994 * 109.47098 * 329.99788 * 1 2 3 24 24 H 1.08998 * 109.47622 * 29.99704 * 4 3 2 25 25 H 1.08999 * 109.46931 * 150.00371 * 4 3 2 26 26 H 0.96999 * 119.99975 * 179.97438 * 8 7 5 27 27 H 1.07999 * 119.35749 * 180.02562 * 15 14 13 28 28 H 1.08002 * 120.16171 * 179.97438 * 16 15 14 29 29 H 1.07991 * 120.85762 * 179.72064 * 17 16 15 30 30 H 1.09005 * 109.46631 * 89.99421 * 20 19 2 31 31 H 1.08996 * 109.47104 * 209.99775 * 20 19 2 32 32 H 1.09002 * 109.46967 * 330.00059 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2782 1.1002 0.0000 4 6 1.7997 2.5292 0.0005 5 6 1.6396 3.0059 -1.4201 6 1 1.8626 2.3408 -2.2412 7 6 1.2096 4.2915 -1.6717 8 7 1.0704 4.7077 -2.9115 9 14 0.8246 5.4423 -0.2514 10 1 2.0503 6.1914 0.1250 11 1 -0.2338 6.3993 -0.6628 12 1 0.3511 4.6508 0.9125 13 6 3.6712 0.6491 -0.0006 14 7 4.8422 1.2796 -0.0005 15 6 5.9778 0.6158 -0.0007 16 6 6.0015 -0.7708 -0.0016 17 6 4.8116 -1.4758 -0.0073 18 6 3.6192 -0.7576 -0.0013 19 7 2.2913 -1.1188 -0.0005 20 6 1.7933 -2.4966 -0.0005 21 1 -0.3633 -0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8899 0.5138 24 1 0.8405 2.5911 0.5147 25 1 2.5284 3.1562 0.5142 26 1 0.7675 5.6120 -3.0884 27 1 6.9100 1.1613 -0.0001 28 1 6.9444 -1.2974 -0.0022 29 1 4.8077 -2.5557 -0.0126 30 1 1.6692 -2.8381 -1.0282 31 1 2.5069 -3.1409 0.5129 32 1 0.8330 -2.5358 0.5138 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260469078.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:53 Heat of formation + Delta-G solvation = 41.774658 kcal Electronic energy + Delta-G solvation = -15561.850806 eV Core-core repulsion = 13100.831520 eV Total energy + Delta-G solvation = -2461.019286 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.48196 -38.99000 -35.76255 -34.19217 -32.52369 -32.18605 -30.70886 -28.24004 -26.76002 -24.33268 -23.45282 -22.53498 -19.88900 -18.93317 -17.83728 -17.72289 -16.71031 -16.56261 -16.13243 -15.17649 -14.86317 -14.51756 -14.41157 -14.19565 -13.96587 -13.71058 -13.45077 -13.18985 -13.02345 -12.69464 -12.43115 -12.21550 -12.11897 -11.86261 -11.58596 -10.89775 -10.74671 -10.07962 -9.10693 -8.52498 -8.25257 -6.27798 0.16535 0.55163 1.35602 1.38831 1.50233 1.73439 1.89368 2.38398 3.08158 3.10073 3.49601 3.75429 3.92351 4.10218 4.12582 4.31638 4.39696 4.48242 4.58535 4.67708 4.78178 4.79223 4.91687 4.99846 5.08222 5.16193 5.24907 5.55956 5.56788 5.64787 5.89347 6.22798 6.34231 6.46137 6.75664 7.32464 7.35223 8.91741 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026580 B = 0.008859 C = 0.007287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.189141 B = 3159.964463 C = 3841.308913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.080 3.920 3 C -0.168 4.168 4 C 0.067 3.933 5 C -0.502 4.502 6 H 0.016 0.984 7 C 0.005 3.995 8 N -0.953 5.953 9 Si 0.950 3.050 10 H -0.275 1.275 11 H -0.276 1.276 12 H -0.242 1.242 13 C 0.053 3.947 14 N -0.496 5.496 15 C 0.064 3.936 16 C -0.153 4.153 17 C -0.083 4.083 18 C 0.031 3.969 19 N -0.479 5.479 20 C 0.072 3.928 21 H 0.074 0.926 22 H 0.102 0.898 23 H 0.079 0.921 24 H 0.036 0.964 25 H 0.006 0.994 26 H 0.266 0.734 27 H 0.175 0.825 28 H 0.181 0.819 29 H 0.169 0.831 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.241 -17.526 9.556 20.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.028 4.028 3 C -0.175 4.175 4 C 0.029 3.971 5 C -0.540 4.540 6 H 0.035 0.965 7 C -0.191 4.191 8 N -0.594 5.594 9 Si 0.773 3.227 10 H -0.201 1.201 11 H -0.201 1.201 12 H -0.165 1.165 13 C -0.079 4.079 14 N -0.205 5.205 15 C -0.103 4.103 16 C -0.174 4.174 17 C -0.112 4.112 18 C -0.078 4.078 19 N -0.163 5.163 20 C -0.068 4.068 21 H 0.092 0.908 22 H 0.121 0.879 23 H 0.097 0.903 24 H 0.054 0.946 25 H 0.025 0.975 26 H 0.075 0.925 27 H 0.192 0.808 28 H 0.198 0.802 29 H 0.186 0.814 30 H 0.094 0.906 31 H 0.120 0.880 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.950 -16.797 9.458 19.501 hybrid contribution 0.049 0.296 -0.201 0.361 sum 2.999 -16.501 9.257 19.157 Atomic orbital electron populations 1.20464 0.85259 1.04499 1.03478 1.20436 0.94965 0.84374 1.03025 1.20382 0.89789 0.96065 1.11222 1.17825 0.95274 0.88962 0.94993 1.21114 1.43506 0.97728 0.91686 0.96548 1.25955 0.94971 0.99615 0.98517 1.70067 1.49344 1.18763 1.21276 0.85670 0.78363 0.78633 0.80059 1.20111 1.20133 1.16527 1.20274 0.92504 0.90514 1.04586 1.67012 0.98447 1.42813 1.12191 1.23161 0.95298 0.93294 0.98543 1.22211 0.99423 0.94516 1.01242 1.20863 0.88248 1.01116 1.00960 1.19356 0.86964 0.94793 1.06723 1.43728 1.02561 1.07078 1.62948 1.22276 1.02566 0.77800 1.04130 0.90779 0.87923 0.90265 0.94569 0.97541 0.92523 0.80846 0.80161 0.81405 0.90561 0.87979 0.87713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.38 9.82 71.24 0.70 -1.68 16 2 C 0.08 3.07 6.83 40.92 0.28 3.35 16 3 C -0.17 -8.11 5.50 -18.62 -0.10 -8.22 16 4 C 0.07 3.62 4.33 29.10 0.13 3.75 16 5 C -0.50 -31.77 9.65 25.60 0.25 -31.52 16 6 H 0.02 1.16 7.98 -2.91 -0.02 1.13 16 7 C 0.01 0.33 5.47 84.66 0.46 0.80 16 8 N -0.95 -62.99 13.96 21.45 0.30 -62.69 16 9 Si 0.95 47.20 27.47 68.60 1.88 49.08 16 10 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 12 H -0.24 -11.02 6.54 99.48 0.65 -10.37 16 13 C 0.05 2.47 7.49 41.72 0.31 2.79 16 14 N -0.50 -22.80 10.42 -185.10 -1.93 -24.73 16 15 C 0.06 2.14 11.16 84.84 0.95 3.09 16 16 C -0.15 -3.83 10.09 22.39 0.23 -3.61 16 17 C -0.08 -2.19 10.10 22.52 0.23 -1.96 16 18 C 0.03 1.10 6.82 39.08 0.27 1.37 16 19 N -0.48 -15.13 3.17 -524.64 -1.66 -16.79 16 20 C 0.07 1.27 10.81 127.77 1.38 2.65 16 21 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 22 H 0.10 2.05 6.91 -2.39 -0.02 2.03 16 23 H 0.08 2.49 7.04 -2.39 -0.02 2.48 16 24 H 0.04 1.81 6.11 -2.39 -0.01 1.79 16 25 H 0.01 0.36 7.57 -2.39 -0.02 0.34 16 26 H 0.27 16.28 8.31 -92.71 -0.77 15.51 16 27 H 0.17 4.57 8.06 -2.91 -0.02 4.54 16 28 H 0.18 2.65 8.06 -2.91 -0.02 2.62 16 29 H 0.17 2.79 8.06 -2.92 -0.02 2.77 16 30 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.10 1.27 8.12 -2.39 -0.02 1.25 16 32 H 0.10 1.37 6.88 -2.39 -0.02 1.35 16 Total: -1.00 -85.33 273.20 4.72 -80.60 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: 1.06 Total: 3.71 kcal Atomic # 6 Polarization: -34.27 SS G_CDS: 5.07 Total: -29.19 kcal Atomic # 7 Polarization: -100.91 SS G_CDS: -3.29 Total: -104.21 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.88 Total: 49.08 kcal Total: -85.33 4.72 -80.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260469078.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.378 kcal (2) G-P(sol) polarization free energy of solvation -85.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds